BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122166.8 + phase: 0
(404 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77850 weakly similar to PIR|H96517|H96517 protein T2E6.22 [imp... 484 e-137
BG646718 weakly similar to PIR|H96517|H96 protein T2E6.22 [impor... 151 2e-48
BF637378 weakly similar to PIR|H96517|H965 protein T2E6.22 [impo... 134 8e-32
BF006197 weakly similar to GP|1310677|emb| protein z-type serpin... 99 4e-21
AW560154 78 5e-15
TC76323 homologue to GP|12054507|emb|CAC20221. ribosomal protein... 30 1.3
TC76569 homologue to GP|10241560|emb|CAB71128. cationic peroxida... 28 6.3
TC89062 weakly similar to GP|5669672|gb|AAD46419.1| receptor-lik... 28 6.3
TC82714 similar to PIR|T07142|T07142 beta-glucan-elicitor recept... 28 6.3
BG582607 28 8.3
>TC77850 weakly similar to PIR|H96517|H96517 protein T2E6.22 [imported] -
Arabidopsis thaliana, partial (65%)
Length = 1485
Score = 484 bits (1245), Expect = e-137
Identities = 244/389 (62%), Positives = 304/389 (77%)
Frame = +2
Query: 16 KSLTNLTNVSLNITKHLLSNQKLNEKNVVFSPLSLNTVLIMITAGSEGPTQNQLLSFLQS 75
+S+ N TNVSL++ KHL S + ++ N+VFSPLSL VL +I +GSEGPTQ QL +FLQS
Sbjct: 53 ESIANQTNVSLSVAKHLFSKE--SDNNIVFSPLSLQVVLSIIASGSEGPTQQQLFNFLQS 226
Query: 76 ESTGDLKSLCSQLVSSVLSDGAPAGGPCLSHVNGVWVEQSLPLQPSFKQLMTTDFKATLA 135
+ST L SQLVS +LSD +PAGGP LS V+GVWV+Q+L LQPSF+Q+++T FKA L+
Sbjct: 227 KSTDHLNYFASQLVSVILSDASPAGGPLLSFVDGVWVDQTLSLQPSFQQIVSTHFKAALS 406
Query: 136 AVDFINKADEVIKEVNLWANKETKGFINDLLPRGSVDSLTSLIFANALYFKGVWKRPFDT 195
+VDF NKA EV EVN WA KET G I +LLP GSV++ T LIFANALYFKG W FD
Sbjct: 407 SVDFQNKAVEVTNEVNSWAEKETNGLIKELLPLGSVNNATRLIFANALYFKGAWNDKFDA 586
Query: 196 SKTKDYDFDLLNGKSVKVPFMTSKNNQFISSFDGFKVLGLPYKQGNDKRAFSIYFFLPDE 255
SKT+DY+F LLNG VKVPFMTSK QFI +FDGFKVLGLPYKQG DKR F++YFFLP+
Sbjct: 587 SKTEDYEFHLLNGSPVKVPFMTSKKKQFIRAFDGFKVLGLPYKQGEDKRQFTMYFFLPNA 766
Query: 256 KDGLSALIDKVASDSEFLEQKLPRNQVKVGKFMIPRFNISFEIEASELLNKLGLTLPFSK 315
KDGL+AL++KVAS+SE L+ KLP +V+VG F IP+FNISF +E S++L +LG+ LPFS
Sbjct: 767 KDGLAALVEKVASESELLQHKLPFGKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFSG 946
Query: 316 GGLTKMVDSPISQELSVTSIFQKSFIELNEEGTIAAATARGSTGGAAPFRLPPPPPIDFV 375
GGLTKMV+S +SQ L V++IF KSFIE+NEEGT AAA + + + PP +DFV
Sbjct: 947 GGLTKMVNSSVSQNLCVSNIFHKSFIEVNEEGTEAAAATAATILLRSAMSI--PPRLDFV 1120
Query: 376 ADHPFLFLIREEFSGTILFVGKVVNPLDG 404
ADHPFLF+IRE+ +GTI+FVG+V+NPL G
Sbjct: 1121ADHPFLFMIREDLTGTIIFVGQVLNPLAG 1207
>BG646718 weakly similar to PIR|H96517|H96 protein T2E6.22 [imported] -
Arabidopsis thaliana, partial (30%)
Length = 702
Score = 151 bits (381), Expect(3) = 2e-48
Identities = 73/107 (68%), Positives = 87/107 (81%)
Frame = +2
Query: 90 SSVLSDGAPAGGPCLSHVNGVWVEQSLPLQPSFKQLMTTDFKATLAAVDFINKADEVIKE 149
S VLSD A AGGP LS V+GVW+E++L LQPSFKQ+M++D+KATLA+VDF+ KA EV KE
Sbjct: 224 SIVLSDAASAGGPHLSFVDGVWIEKTLSLQPSFKQIMSSDYKATLASVDFMFKAPEVRKE 403
Query: 150 VNLWANKETKGFINDLLPRGSVDSLTSLIFANALYFKGVWKRPFDTS 196
VN+W KET G I +L+P GSVDSLTSLIFANALYF+G W FD S
Sbjct: 404 VNIWVEKETNGLIKELIPPGSVDSLTSLIFANALYFRGAWNEKFDVS 544
Score = 45.4 bits (106), Expect(3) = 2e-48
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +1
Query: 17 SLTNLTNVSLNITKHLLSNQKLNEKNVVFSPLSLNTVLIMI 57
S+TN T VSL I KHL S Q +E N+VFSPLSL VL ++
Sbjct: 22 SMTNQTRVSLRIAKHLFSKQ--SENNIVFSPLSLQVVLSIL 138
Score = 35.0 bits (79), Expect(3) = 2e-48
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = +3
Query: 61 SEGPTQNQLLSFLQSESTGDLKSLCSQLVSSVLS 94
S+ PT QLL FL+S+ST L L SQLVS + S
Sbjct: 135 SDCPTPQQLLDFLRSKSTDHLNYLASQLVSLLCS 236
>BF637378 weakly similar to PIR|H96517|H965 protein T2E6.22 [imported] -
Arabidopsis thaliana, partial (9%)
Length = 627
Score = 134 bits (336), Expect = 8e-32
Identities = 72/127 (56%), Positives = 91/127 (70%)
Frame = +1
Query: 16 KSLTNLTNVSLNITKHLLSNQKLNEKNVVFSPLSLNTVLIMITAGSEGPTQNQLLSFLQS 75
+S N T VSL I KHL S + +EKN+VFSPLSL VL +ITAGSEG TQ QLL FL+
Sbjct: 19 ESSNNQTKVSLTIVKHLFSKE--SEKNIVFSPLSLQVVLSIITAGSEGSTQQQLLDFLRF 192
Query: 76 ESTGDLKSLCSQLVSSVLSDGAPAGGPCLSHVNGVWVEQSLPLQPSFKQLMTTDFKATLA 135
+ST L S S +S +L D +GGP LS V+GVW+E++L LQ SFKQ+++ D+KATL+
Sbjct: 193 KSTDHLNSSVSHQLSIILKDATSSGGPHLSFVDGVWLEKTLSLQSSFKQIVSEDYKATLS 372
Query: 136 AVDFINK 142
VDF NK
Sbjct: 373 EVDFKNK 393
>BF006197 weakly similar to GP|1310677|emb| protein z-type serpin {Hordeum
vulgare subsp. vulgare}, partial (7%)
Length = 468
Score = 98.6 bits (244), Expect = 4e-21
Identities = 51/87 (58%), Positives = 62/87 (70%)
Frame = +3
Query: 56 MITAGSEGPTQNQLLSFLQSESTGDLKSLCSQLVSSVLSDGAPAGGPCLSHVNGVWVEQS 115
++TA EG TQ QLL FL+S+ L S S LVS +LSD AP+GG LS VWV+Q+
Sbjct: 3 IVTAACEGRTQQQLLEFLRSKFIDHLNSFTSHLVSIILSDAAPSGGSRLSLTQRVWVDQT 182
Query: 116 LPLQPSFKQLMTTDFKATLAAVDFINK 142
L LQPSFK+ M TD+KATLA+VDF NK
Sbjct: 183 LSLQPSFKETMVTDYKATLASVDFQNK 263
>AW560154
Length = 470
Score = 78.2 bits (191), Expect = 5e-15
Identities = 39/62 (62%), Positives = 46/62 (73%)
Frame = +1
Query: 81 LKSLCSQLVSSVLSDGAPAGGPCLSHVNGVWVEQSLPLQPSFKQLMTTDFKATLAAVDFI 140
L S S LVS +LSD AP+GG LS VWV+Q+L LQPSFK+ M TD+KATLA+VDF
Sbjct: 7 LNSFTSDLVSIILSDAAPSGGSRLSFTQRVWVDQTLSLQPSFKETMVTDYKATLASVDFQ 186
Query: 141 NK 142
NK
Sbjct: 187 NK 192
>TC76323 homologue to GP|12054507|emb|CAC20221. ribosomal protein L2
{Glycine max}, complete
Length = 1031
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = -1
Query: 19 TNLTNVSLNITKHLLSNQKLNEKNVVFSPLSLNTVLIMITAGSEGPTQNQLLSFL----Q 74
T +TN++LNIT H + +N+ + L T + +T + +LL FL
Sbjct: 419 TTVTNMTLNITNHSTFRDRSKRQNITNNKSRLFTAVNKLTGIQTLSSNEKLLLFLITEGM 240
Query: 75 SESTGDLKSLCSQLVSSVLSD 95
+ES +S + +V V D
Sbjct: 239 TESDLSKRSTATWIVDDVGDD 177
>TC76569 homologue to GP|10241560|emb|CAB71128. cationic peroxidase {Cicer
arietinum}, partial (98%)
Length = 1638
Score = 28.1 bits (61), Expect = 6.3
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 7/49 (14%)
Frame = +2
Query: 224 ISSFDGFKVLGLPY-------KQGNDKRAFSIYFFLPDEKDGLSALIDK 265
+S+ +G LG PY + G R + +LPD + +SA++DK
Sbjct: 641 LSAREGIVSLGGPYIPLKTGRRDGRKSRVDLLEAYLPDHNESISAVLDK 787
>TC89062 weakly similar to GP|5669672|gb|AAD46419.1| receptor-like kinase
{Hordeum vulgare}, partial (26%)
Length = 1309
Score = 28.1 bits (61), Expect = 6.3
Identities = 19/56 (33%), Positives = 23/56 (40%)
Frame = +3
Query: 12 NLIGKSLTNLTNVSLNITKHLLSNQKLNEKNVVFSPLSLNTVLIMITAGSEGPTQN 67
N IG + NL+N I + N NVVFS + N G PTQN
Sbjct: 267 NTIGFPILNLSNTEYIIEEIFYQNHSFRVSNVVFSRSNTN-------KGCLSPTQN 413
>TC82714 similar to PIR|T07142|T07142 beta-glucan-elicitor receptor -
soybean, partial (33%)
Length = 906
Score = 28.1 bits (61), Expect = 6.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 195 TSKTKDYDFDLLNGKSVKVPFMTSKNNQFISSF 227
T +T DY LLNGK+V + F + QF++S+
Sbjct: 397 TRETVDYGLLLLNGKNVGLGFSSYHCFQFLNSY 495
>BG582607
Length = 754
Score = 27.7 bits (60), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 340 FIELNEEGTIAAATARGSTGGAAPFRLPPPPPIDFVADHPFLFL 383
F+ +N++ T A + +T A+P PPPPP + F FL
Sbjct: 199 FLLINDKETTAI---KPTTARASPTIFPPPPPPSLLLRFLFFFL 77
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,044,392
Number of Sequences: 36976
Number of extensions: 145244
Number of successful extensions: 1071
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of query: 404
length of database: 9,014,727
effective HSP length: 98
effective length of query: 306
effective length of database: 5,391,079
effective search space: 1649670174
effective search space used: 1649670174
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC122166.8