TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122166.1 + phase: 0 
         (55 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292...    70  1e-13
AJ497367 similar to GP|14140286|gb putative helicase {Oryza sati...    59  3e-10
CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis ...    57  2e-09
BM814840 weakly similar to GP|15128241|db helicase-like protein ...    56  2e-09
TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG282...    28  0.95
TC84293 similar to GP|23617010|dbj|BAC20706. contains ESTs D4714...    26  2.8
AW773751 similar to PIR|D86157|D8 hypothetical protein AAF02892....    25  4.7
AW256359                                                               25  6.2

>CB892155 similar to PIR|D86481|D86 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 572

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 34/55 (61%), Positives = 44/55 (79%)
 Frame = -2

Query: 1   MSVWIHLCYFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
           + V++    FSHGQLYVA+SRVTSR GLKILI++DDG+D  V S+V+YREV  N+
Sbjct: 313 IGVYLPSSVFSHGQLYVALSRVTSREGLKILISNDDGEDDCVTSNVVYREVFHNL 149


>AJ497367 similar to GP|14140286|gb putative helicase {Oryza sativa
          (japonica cultivar-group)}, partial (1%)
          Length = 543

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 27/47 (57%), Positives = 39/47 (82%)
 Frame = +1

Query: 9  YFSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
          +FS+G+LYVA+SRVTSR GLKIL+  +DG+  +  S+V+Y+EV RN+
Sbjct: 16 FFSNGKLYVAVSRVTSRKGLKILLAHEDGNCMNTTSNVVYKEVFRNL 156


>CB892166 similar to GP|20197614|gb unknown protein {Arabidopsis thaliana},
           partial (3%)
          Length = 748

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 29/46 (63%), Positives = 38/46 (82%)
 Frame = -1

Query: 10  FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
           FSHGQLYVAISRV+SR GLKIL+ D++GD  D  ++V+Y+ V +NV
Sbjct: 271 FSHGQLYVAISRVSSRNGLKILMIDENGDCIDNTTNVVYK-VFQNV 137


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 25/46 (54%), Positives = 35/46 (75%)
 Frame = +3

Query: 10  FSHGQLYVAISRVTSRGGLKILINDDDGDDTDVASSVIYREVSRNV 55
           F+HGQLYVA+SRV SR GLKILI D++G  +    +V+Y+EV + +
Sbjct: 270 FTHGQLYVAVSRVKSRSGLKILITDENGSPSSSTVNVVYQEVFQKI 407


>TC84660 similar to PIR|D86481|D86481 hypothetical protein AAG28292.1
           [imported] - Arabidopsis thaliana, partial (1%)
          Length = 1009

 Score = 27.7 bits (60), Expect = 0.95
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 10  FSHGQLYVAISRVTSR 25
           F HG LYVA+SRVTSR
Sbjct: 107 F*HG*LYVALSRVTSR 154


>TC84293 similar to GP|23617010|dbj|BAC20706. contains ESTs D47144(S12288)
           AU032626(S12288)~similar to Arabidopsis thaliana
           chromosome 5, partial (25%)
          Length = 830

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 19  ISRVTSRGGLKILINDDDGD 38
           +   TSRG LK+ +++DDGD
Sbjct: 141 VYNTTSRGILKVALSNDDGD 200


>AW773751 similar to PIR|D86157|D8 hypothetical protein AAF02892.1 [imported]
           - Arabidopsis thaliana, partial (16%)
          Length = 600

 Score = 25.4 bits (54), Expect = 4.7
 Identities = 11/31 (35%), Positives = 15/31 (47%)
 Frame = +1

Query: 3   VWIHLCYFSHGQLYVAISRVTSRGGLKILIN 33
           VW+HL Y  HG  Y    R    G  + L++
Sbjct: 82  VWLHLVYSLHGGFYTQTMRQCGCGQCQ*LVS 174


>AW256359 
          Length = 411

 Score = 25.0 bits (53), Expect = 6.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 15  LYVAISRVTSRGGLKILINDDDG 37
           +YV IS +   GG ++ +ND+DG
Sbjct: 356 VYVFIS*INLLGGTELPVNDEDG 288


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,815,312
Number of Sequences: 36976
Number of extensions: 15767
Number of successful extensions: 122
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of query: 55
length of database: 9,014,727
effective HSP length: 31
effective length of query: 24
effective length of database: 7,868,471
effective search space: 188843304
effective search space used: 188843304
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)