BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122165.12 + phase: 1 /pseudo
(150 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC92116 similar to GP|21592912|gb|AAM64862.1 unknown {Arabidopsi... 159 4e-40
TC79535 weakly similar to GP|10178054|dbj|BAB11418. gene_id:MUB3... 29 0.63
AL381395 SP|Q9BBQ6|CYB6 Cytochrome B6. {Lotus japonicus}, partia... 28 1.1
TC91762 homologue to PIR|T13434|T13434 hypothetical protein T17A... 28 1.4
TC86891 similar to PIR|D86244|D86244 protein Ser/Thr protein kin... 28 1.8
TC79727 weakly similar to GP|18146784|dbj|BAB82451. PBng110 {Vig... 28 1.8
TC78873 similar to GP|21740530|emb|CAD41509. OSJNBa0029H02.25 {O... 28 1.8
BG457155 weakly similar to GP|21593695|gb unknown {Arabidopsis t... 28 1.8
BF635599 similar to GP|21553745|gb Yippee-like protein {Arabidop... 28 1.8
TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Atel... 27 2.4
BQ144302 similar to GP|6815109|dbj| hypothetical protein {Oryza ... 27 2.4
CA858513 weakly similar to PIR|S61428|S614 embryonic abundant pr... 27 3.1
TC80271 weakly similar to PIR|T02561|T02561 probable cellulose s... 27 4.1
AJ501472 similar to GP|17064736|gb| Unknown protein {Arabidopsis... 26 5.3
TC92078 similar to GP|21439796|emb|CAD35171. unnamed protein pro... 26 5.3
TC91023 weakly similar to PIR|T02561|T02561 probable cellulose s... 26 5.3
TC85220 weakly similar to PIR|S33520|S33520 Lea protein - soybea... 26 5.3
BG644375 homologue to GP|5381253|dbj peroxidase {Nicotiana tabac... 26 5.3
AW689366 weakly similar to GP|9758526|dbj| gb|AAD48967.1~gene_id... 26 7.0
TC86819 similar to GP|15146218|gb|AAK83592.1 AT3g09470/F11F8_4 {... 26 7.0
>TC92116 similar to GP|21592912|gb|AAM64862.1 unknown {Arabidopsis
thaliana}, partial (73%)
Length = 915
Score = 159 bits (402), Expect = 4e-40
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 ASDRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTL 60
ASDRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTL
Sbjct: 268 ASDRLISALCYFYPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTL 447
Query: 61 YFFVVRNPNFSKYVRF 76
YFFVVRNPNFSKYVRF
Sbjct: 448 YFFVVRNPNFSKYVRF 495
Score = 153 bits (386), Expect = 3e-38
Identities = 82/104 (78%), Positives = 84/104 (79%)
Frame = +2
Query: 47 KSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNTMQAIVLDVLLIFPDLLERGFNPRGGFGL 106
K+FP GFL F F + NTMQAIVLDVLLIFPDLLERGFNPRGGFGL
Sbjct: 407 KAFPLMGFLCF*HFTFLLSEILISVNMSGSNTMQAIVLDVLLIFPDLLERGFNPRGGFGL 586
Query: 107 DLLMSLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVADAADRQV 150
DLLMSLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVADAADRQV
Sbjct: 587 DLLMSLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVADAADRQV 718
>TC79535 weakly similar to GP|10178054|dbj|BAB11418.
gene_id:MUB3.3~pir||T03813~similar to unknown protein
{Arabidopsis thaliana}, partial (86%)
Length = 1356
Score = 29.3 bits (64), Expect = 0.63
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 39 LIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNTMQAIVLDVLLIFP 91
+IP R+FK +N F++ + R PN F+ +++ L+V+ + P
Sbjct: 320 IIPTFRIFKKLKWNNFIINFNVELIFYRMPNLC----FSRIKSRNLEVICVKP 174
>AL381395 SP|Q9BBQ6|CYB6 Cytochrome B6. {Lotus japonicus}, partial (71%)
Length = 524
Score = 28.5 bits (62), Expect = 1.1
Identities = 13/53 (24%), Positives = 26/53 (48%)
Frame = +2
Query: 22 GKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFSKYV 74
G+ +T+FY + V PL+ A VF+ ++F ++R +F ++
Sbjct: 404 GQSTLTRFYSLHTFVLPLLTA-------------VFMLMHFLMIRKQHFRSFI 523
>TC91762 homologue to PIR|T13434|T13434 hypothetical protein T17A13.50 -
Arabidopsis thaliana, partial (40%)
Length = 1002
Score = 28.1 bits (61), Expect = 1.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 111 SLDSTVFLFLLVCLIYGSSSCILGQLPRLPIVADAADR 148
S S VFL + ++YG S C++ L L + D ++
Sbjct: 606 SFSSFVFLLYMPLMVYGKSVCLIHLLSLLEVFLDGCNK 493
>TC86891 similar to PIR|D86244|D86244 protein Ser/Thr protein kinase homolog
[imported] - Arabidopsis thaliana, partial (55%)
Length = 2708
Score = 27.7 bits (60), Expect = 1.8
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +2
Query: 106 LDLLMSLDSTVFLFLLVCLIY 126
L+LLMSLD V + LLV L+Y
Sbjct: 749 LELLMSLDLKVMVLLLVLLVY 811
>TC79727 weakly similar to GP|18146784|dbj|BAB82451. PBng110 {Vigna
radiata}, partial (75%)
Length = 1092
Score = 27.7 bits (60), Expect = 1.8
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +3
Query: 47 KSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNTMQAIVLDVL 87
K FPF FL +L L F +++ NF+ +F ++LD L
Sbjct: 21 KFFPFFFFLPYLYLTFIIIKFNNFASQTQF-----LLLDTL 128
>TC78873 similar to GP|21740530|emb|CAD41509. OSJNBa0029H02.25 {Oryza
sativa}, partial (7%)
Length = 623
Score = 27.7 bits (60), Expect = 1.8
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = +1
Query: 54 FLVFLTLYFFVVRNPNFS 71
FL+FL L+FF+ NPNFS
Sbjct: 43 FLIFLLLFFFI--NPNFS 90
>BG457155 weakly similar to GP|21593695|gb unknown {Arabidopsis thaliana},
partial (26%)
Length = 662
Score = 27.7 bits (60), Expect = 1.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 47 KSFPFNGFLVFLTLYFFVVRNPNFSKYVRFN 77
++FP VFL L+F++++ P F +++ N
Sbjct: 383 EAFPSTPSTVFLALHFYLIKVPQFLIHIQLN 291
>BF635599 similar to GP|21553745|gb Yippee-like protein {Arabidopsis
thaliana}, partial (88%)
Length = 546
Score = 27.7 bits (60), Expect = 1.8
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -2
Query: 34 AIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFSKYVRFNT 78
+IV P+I IR PF L FL L F V N F + R T
Sbjct: 347 SIVDPIIATIRT*YLVPFKYRLSFLVLLVFFVGNLIFPTHNRSTT 213
>TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Ateline
herpesvirus 3}, partial (8%)
Length = 986
Score = 27.3 bits (59), Expect = 2.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 54 FLVFLTLYFFVVRNPNFSKYVRFNTMQAIVLDVLLI 89
FL+F+ L+ F+V N V F+T+ IV+ ++LI
Sbjct: 746 FLIFILLFLFIVFFINTFLLVLFSTLFLIVIILVLI 639
>BQ144302 similar to GP|6815109|dbj| hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (3%)
Length = 1047
Score = 27.3 bits (59), Expect = 2.4
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 13 YPFFDGIQYGKFVITQFYPIQAIVQPLIPAIRVFKSFPFNGFLVFLTLYFFVVRNPNFS 71
+PF ++ FV F I ++ PL+P PF FL L FF P FS
Sbjct: 271 FPFLSFLRRSVFVFAPFSFINSLAPPLVP-----PPPPFPFFLFVSPLIFFHTVCPCFS 432
>CA858513 weakly similar to PIR|S61428|S614 embryonic abundant protein group
3 precursor (clone PM10) - soybean, partial (19%)
Length = 869
Score = 26.9 bits (58), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Frame = -1
Query: 108 LLMSLDSTVFLFL--LVCLIYGSSSCILGQL 136
LL S+ S +F L + C+I+G CI G L
Sbjct: 806 LLCSITSIIFCLLCCITCIIFGLVCCIFGHL 714
>TC80271 weakly similar to PIR|T02561|T02561 probable cellulose synthase
At2g32620 [imported] - Arabidopsis thaliana, partial
(11%)
Length = 553
Score = 26.6 bits (57), Expect = 4.1
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = -3
Query: 58 LTLYFFVVRNPNFSKY 73
L + FF RNPNFSK+
Sbjct: 485 LNIIFFTKRNPNFSKF 438
>AJ501472 similar to GP|17064736|gb| Unknown protein {Arabidopsis thaliana},
partial (10%)
Length = 731
Score = 26.2 bits (56), Expect = 5.3
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 109 LMSLDSTVFLFLLVCLIYGSSS 130
L +L +++ LFLLV LIY SSS
Sbjct: 73 LFNLTNSLGLFLLVSLIYSSSS 138
>TC92078 similar to GP|21439796|emb|CAD35171. unnamed protein product
{Glycine max}, partial (32%)
Length = 733
Score = 26.2 bits (56), Expect = 5.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 104 FGLDLLMSLDSTVFLFLLVCLIY 126
FGL L +SL + FLFLL+ IY
Sbjct: 406 FGL*LFLSLVNIYFLFLLINYIY 474
>TC91023 weakly similar to PIR|T02561|T02561 probable cellulose synthase
At2g32620 [imported] - Arabidopsis thaliana, partial
(10%)
Length = 855
Score = 26.2 bits (56), Expect = 5.3
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 58 LTLYFFVVRNPNFSKYVR-FNTMQA 81
L + FF RNPNFSK FNT ++
Sbjct: 525 LNIIFFTKRNPNFSKLKSLFNTKKS 451
>TC85220 weakly similar to PIR|S33520|S33520 Lea protein - soybean, partial
(69%)
Length = 1880
Score = 26.2 bits (56), Expect = 5.3
Identities = 13/31 (41%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Frame = -3
Query: 108 LLMSLDSTVF--LFLLVCLIYGSSSCILGQL 136
LL S+ S +F L + C+I+G CI G L
Sbjct: 1017 LLCSITSIIFGLLCCITCIIFGLVCCIFGHL 925
>BG644375 homologue to GP|5381253|dbj peroxidase {Nicotiana tabacum}, partial
(59%)
Length = 590
Score = 26.2 bits (56), Expect = 5.3
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +2
Query: 113 DSTVFLFLLVCLIYGSSSCIL 133
++ VFLFLLV L+ GSSS L
Sbjct: 2 NTMVFLFLLVTLLIGSSSAQL 64
>AW689366 weakly similar to GP|9758526|dbj|
gb|AAD48967.1~gene_id:K15O15.6~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (11%)
Length = 403
Score = 25.8 bits (55), Expect = 7.0
Identities = 10/19 (52%), Positives = 16/19 (83%)
Frame = +1
Query: 47 KSFPFNGFLVFLTLYFFVV 65
K+ F+ FL+F+T+YFF+V
Sbjct: 31 KNSSFSLFLLFITVYFFMV 87
>TC86819 similar to GP|15146218|gb|AAK83592.1 AT3g09470/F11F8_4 {Arabidopsis
thaliana}, partial (60%)
Length = 1234
Score = 25.8 bits (55), Expect = 7.0
Identities = 11/31 (35%), Positives = 15/31 (47%)
Frame = +3
Query: 102 GGFGLDLLMSLDSTVFLFLLVCLIYGSSSCI 132
GGFG D + ++F VC G+ S I
Sbjct: 378 GGFGYDFAWDIIFVFYIFFCVCFFGGADSRI 470
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.335 0.153 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,177,198
Number of Sequences: 36976
Number of extensions: 77117
Number of successful extensions: 905
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of query: 150
length of database: 9,014,727
effective HSP length: 87
effective length of query: 63
effective length of database: 5,797,815
effective search space: 365262345
effective search space used: 365262345
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC122165.12