BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122160.3 - phase: 0 /pseudo
(835 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86264 similar to GP|11993486|gb|AAG42761.1 ubiquitin-specific ... 1431 0.0
TC86265 weakly similar to GP|11993486|gb|AAG42761.1 ubiquitin-sp... 181 1e-45
BF645828 weakly similar to GP|11993480|gb| ubiquitin-specific pr... 115 9e-26
CB894740 similar to GP|11993486|gb| ubiquitin-specific protease ... 97 2e-20
AW585736 similar to GP|11993490|gb ubiquitin-specific protease 2... 94 2e-19
TC80485 similar to GP|4115922|gb|AAD03433.1| contains similarity... 83 4e-16
TC80301 similar to PIR|B84611|B84611 probable ubiquitin carboxyl... 82 6e-16
BG644881 similar to GP|6648604|gb| ubiquitin-specific protease; ... 79 5e-15
TC93049 similar to GP|11993488|gb|AAG42762.1 ubiquitin-specific ... 67 2e-11
AW690560 similar to GP|11993482|gb| ubiquitin-specific protease ... 67 2e-11
BQ122314 65 1e-10
TC90777 weakly similar to GP|15810655|gb|AAL07252.1 putative ubi... 64 3e-10
TC80588 similar to GP|23617092|dbj|BAC20775. putative ubiquitin ... 59 8e-09
TC93092 similar to GP|16944687|emb|CAD11412. conserved hypotheti... 59 8e-09
TC80250 similar to GP|11993490|gb|AAG42763.1 ubiquitin-specific ... 57 2e-08
TC91406 similar to GP|4115922|gb|AAD03433.1| contains similarity... 47 2e-05
CA923073 similar to GP|11993469|gb| ubiquitin-specific protease ... 47 3e-05
AA660279 similar to GP|11993492|g ubiquitin-specific protease 26... 43 4e-04
BQ148032 similar to GP|13374862|em ubiquitin-specific protease-l... 42 0.001
TC78265 similar to GP|11993467|gb|AAG42752.1 ubiquitin-specific ... 39 0.006
>TC86264 similar to GP|11993486|gb|AAG42761.1 ubiquitin-specific protease 23
{Arabidopsis thaliana}, partial (42%)
Length = 3030
Score = 1431 bits (3704), Expect = 0.0
Identities = 744/847 (87%), Positives = 750/847 (87%), Gaps = 12/847 (1%)
Frame = +3
Query: 1 MAETLMVETETITKQHDPFQRKIEFIPVKKPFKGFSNDFNIETLNPTTSEHRQLVSANIQ 60
MAETLMVETETITKQHDPFQRKIEFIPVKKPFKGFSNDFNIETLNPTTSEHRQLVSANIQ
Sbjct: 117 MAETLMVETETITKQHDPFQRKIEFIPVKKPFKGFSNDFNIETLNPTTSEHRQLVSANIQ 296
Query: 61 SSQPQPSKNSEFSEFGLDPELSLGITFRRIGAGLWNLGNTCFLNSVLQCLTYTEPLAAYL 120
SSQPQPSKNSEFSEFGLDPELSLGITFRRIGAGLWNLGNTCFLNSVLQCLTYTEPLAAYL
Sbjct: 297 SSQPQPSKNSEFSEFGLDPELSLGITFRRIGAGLWNLGNTCFLNSVLQCLTYTEPLAAYL 476
Query: 121 QSGKHKSSCHIAGFCALCAIQNHVSCALQATGRIVSPQDMVGNLRCILMSCFFNEQ---- 176
QSGKHKSSCHIAGFCALCAIQNHVSCALQATGRIVSPQDMVGNLRCI + Q
Sbjct: 477 QSGKHKSSCHIAGFCALCAIQNHVSCALQATGRIVSPQDMVGNLRCISRNFRKARQEDAH 656
Query: 177 --------SRHITQFPKG*AGRCT*VYGELT*VNA*MLPAFWSTE*ITWCFREKFGS*DL 228
S H P G P + + F + S +
Sbjct: 657 EYMVNLLESMHKCCLPSGVPSES---------------PGAFEKSLVHKIFGGRLRS-QV 788
Query: 229 WWSSSKSASNKFDPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAV 288
+SNKFDPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAV
Sbjct: 789 KCRQCSYSSNKFDPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAV 968
Query: 289 KQLTIHKAPYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFVSGSSDGDVKYSLYGVL 348
KQLTIHKAPYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFVSGSSDGDVKYSLYGVL
Sbjct: 969 KQLTIHKAPYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFVSGSSDGDVKYSLYGVL 1148
Query: 349 VHSGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRK 408
VHSGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRK
Sbjct: 1149VHSGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRK 1328
Query: 409 PVNIAKEEISKTNVIGSRYPSTPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPSRI 468
PVNIAKEEISKTNVIGSRYPSTPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPSRI
Sbjct: 1329PVNIAKEEISKTNVIGSRYPSTPTNALKDYPNGHVENKFCGVPLTAETQKNLLNADPSRI 1508
Query: 469 SDALIQQKNSGILAKSLMHNETPVSERTSKELTQMNSSDELPVAKSELECLSSLDHSGKD 528
SDALIQQKNSGILAKSLMHNETPVSERTSKELTQMNSSDELPVAKSELECLSSLDHSGKD
Sbjct: 1509SDALIQQKNSGILAKSLMHNETPVSERTSKELTQMNSSDELPVAKSELECLSSLDHSGKD 1688
Query: 529 NVSGNQKCLVAPAGDKPNLFTEDTLLKEGVDSPLVEPIVSNPQTFIGKHASDRTSPSDEV 588
NVSGNQKCLVAPAGDKPNLFTEDTLLKEGVDSPLVEPIVSNPQTFIGKHASDRTSPSDE
Sbjct: 1689NVSGNQKCLVAPAGDKPNLFTEDTLLKEGVDSPLVEPIVSNPQTFIGKHASDRTSPSDE- 1865
Query: 589 SLSKYFSILFGQNWCYFSFLDYLSVIHCQKNSPAEVDAVAAQDSVTNLSEHAGLVGTSNA 648
KNSPAEVDAVAAQDSVTNLSEHAGLVGTSNA
Sbjct: 1866-----------------------------KNSPAEVDAVAAQDSVTNLSEHAGLVGTSNA 1958
Query: 649 VVPQGLVLKVSSKRSLKDSSLDQKQVKKSKKKFPKYKGSIMQLSLIRPSMRCLGPRKKNH 708
VVPQGLVLKVSSKRSLKDSSLDQKQVKKSKKKFPKYKGSIMQLSLIRPSMRCLGPRKKNH
Sbjct: 1959VVPQGLVLKVSSKRSLKDSSLDQKQVKKSKKKFPKYKGSIMQLSLIRPSMRCLGPRKKNH 2138
Query: 709 KKNRRCLLGLKYHSKEKLKKNAISSDVGPSISRKEHLRSSLMKHDAEREIINRMDQNCAV 768
KKNRRCLLGLKYHSKEKLKKNAISSDVGPSISRKEHLRSSLMKHDAEREIINRMDQNCAV
Sbjct: 2139KKNRRCLLGLKYHSKEKLKKNAISSDVGPSISRKEHLRSSLMKHDAEREIINRMDQNCAV 2318
Query: 769 LATATQVENMSRCSLQDDKRDQMQNTVVTQGLEETVVARWDDVELPSSQALESKTDQIAR 828
LATATQVENMSRCSLQDDKRDQMQNTVVTQGLEETVVARWDDVELPSSQALESKTDQIAR
Sbjct: 2319LATATQVENMSRCSLQDDKRDQMQNTVVTQGLEETVVARWDDVELPSSQALESKTDQIAR 2498
Query: 829 IGYVGDE 835
IGYVGDE
Sbjct: 2499IGYVGDE 2519
>TC86265 weakly similar to GP|11993486|gb|AAG42761.1 ubiquitin-specific
protease 23 {Arabidopsis thaliana}, partial (3%)
Length = 585
Score = 181 bits (459), Expect = 1e-45
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 745 LRSSLMKHDAEREIINRMDQNCAVLATATQVENMSRCSLQDDKRDQMQNTVVTQGLEETV 804
LRSSLMKHDAEREIINRMDQNCAVLATATQVENMSRCSLQDDKRDQMQNTVVTQGLEETV
Sbjct: 2 LRSSLMKHDAEREIINRMDQNCAVLATATQVENMSRCSLQDDKRDQMQNTVVTQGLEETV 181
Query: 805 VARWDDVELPSSQALESKTDQIARIGYVGDE 835
VARWDDVELPSSQALESKTDQIARIGYVGDE
Sbjct: 182 VARWDDVELPSSQALESKTDQIARIGYVGDE 274
>BF645828 weakly similar to GP|11993480|gb| ubiquitin-specific protease 20
{Arabidopsis thaliana}, partial (8%)
Length = 544
Score = 115 bits (287), Expect = 9e-26
Identities = 60/144 (41%), Positives = 89/144 (61%), Gaps = 4/144 (2%)
Frame = +3
Query: 241 DPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVL 300
+P +DLSLEI DS+ AL +FT E +D K C+ C ++V KQL + + P +
Sbjct: 45 EPLIDLSLEIENVDSISSALESFTMVENIDAKLK---CEGCNEEVSVEKQLMLDQTPSIA 215
Query: 301 AIHLKRFYAHDPNI--KIKKKVRFDSALNLKPF--VSGSSDGDVKYSLYGVLVHSGFSTH 356
A HLKRF N KI K + F L+L+P+ ++ S + +KY LY V+VH+G S+
Sbjct: 216 AFHLKRFKTVGNNAVEKIDKHINFPLELDLQPYTILNESDNASLKYDLYAVVVHNGTSSD 395
Query: 357 SGHYYCYVRTSNNMWYTLDDTRVS 380
SGHY+C+VRT+ + W+ LDD+ V+
Sbjct: 396 SGHYFCFVRTAPDTWHKLDDSMVA 467
>CB894740 similar to GP|11993486|gb| ubiquitin-specific protease 23
{Arabidopsis thaliana}, partial (3%)
Length = 389
Score = 97.4 bits (241), Expect = 2e-20
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +2
Query: 134 FCALCAIQNHVSCALQATGRIVSPQDMVGNLRCILMSCFFNEQSR 178
FCALCAIQNHVSCALQATGRIVSPQDMVGNLRCILMSCFFNEQSR
Sbjct: 2 FCALCAIQNHVSCALQATGRIVSPQDMVGNLRCILMSCFFNEQSR 136
>AW585736 similar to GP|11993490|gb ubiquitin-specific protease 25
{Arabidopsis thaliana}, partial (19%)
Length = 460
Score = 94.0 bits (232), Expect = 2e-19
Identities = 53/133 (39%), Positives = 79/133 (58%), Gaps = 1/133 (0%)
Frame = +3
Query: 282 KQKVQAVKQLTIHKAPYVLAIHLKRFYAHDPNIKIKKKVRFDSALNLKPFV-SGSSDGDV 340
K+ V A KQ++I +AP +L I LKRF KI K V F+ L L F+ S D
Sbjct: 6 KKLVAAKKQMSILQAPNILVIQLKRFEGILGG-KIDKAVGFEEVLVLSNFMCKASQDPQP 182
Query: 341 KYSLYGVLVHSGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRD 400
+Y L+G +VHSG+S SGHYY Y++ + WY DD+ V+ QEVL+++ Y+LF+ R
Sbjct: 183 EYKLFGAIVHSGYSPESGHYYAYIKDAMGRWYCCDDSCVTLASLQEVLSEKVYILFFSR- 359
Query: 401 KKSITPRKPVNIA 413
T ++P +++
Sbjct: 360 ----TNQRPASVS 386
>TC80485 similar to GP|4115922|gb|AAD03433.1| contains similarity to
ubiquitin carboxyl-terminal hydrolase family 2, partial
(18%)
Length = 1289
Score = 83.2 bits (204), Expect = 4e-16
Identities = 55/151 (36%), Positives = 76/151 (49%), Gaps = 3/151 (1%)
Frame = +1
Query: 252 KADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRF-YAH 310
+A SL L F E L G + ++C +CK+ QA K+L + K P +L HLKRF Y+
Sbjct: 391 EAISLFSCLEAFLTEEPL-GPDDMWYCPQCKEHRQATKKLDLWKLPEILVFHLKRFSYSR 567
Query: 311 DPNIKIKKKVRFD-SALNLKPFVSGSSDGDVKYSLYGVLVHSGFSTHSGHYYCYVR-TSN 368
K+ V F L+L +V Y+LY + H G GHY Y + +
Sbjct: 568 YLKNKLDTFVNFPIHNLDLTKYVKSQDGPSYVYNLYAISNHYG-GLGGGHYTAYAKLIDD 744
Query: 369 NMWYTLDDTRVSHVGEQEVLNQQAYMLFYVR 399
N WY DD+ VS V E E+ + AY+LFY R
Sbjct: 745 NKWYHFDDSHVSPVSEGEIKSSAAYVLFYQR 837
>TC80301 similar to PIR|B84611|B84611 probable ubiquitin carboxyl terminal
hydrolase [imported] - Arabidopsis thaliana, partial
(96%)
Length = 1376
Score = 82.4 bits (202), Expect = 6e-16
Identities = 51/148 (34%), Positives = 76/148 (50%), Gaps = 1/148 (0%)
Frame = +1
Query: 241 DPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVL 300
+ F DLSL+I + S+ L NF++ E L+ +K + C +C +A K++ I K P++L
Sbjct: 751 ETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDK-FFCDKCCSLQEAQKRMKIKKPPHIL 927
Query: 301 AIHLKRFYAHDPNIKIKKKVRFDSALNLK-PFVSGSSDGDVKYSLYGVLVHSGFSTHSGH 359
IHLKRF + + KK L D D++YSL+ V+VH G + GH
Sbjct: 928 VIHLKRFKYMEQLGRYKKLCLPSCVFPLS*S*AILLEDADIEYSLFAVVVHVGSGPNHGH 1107
Query: 360 YYCYVRTSNNMWYTLDDTRVSHVGEQEV 387
Y V+ S+N W DD V + E V
Sbjct: 1108YVSLVK-SHNHWLFFDDENVEMIDESAV 1188
Score = 38.1 bits (87), Expect = 0.014
Identities = 24/77 (31%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Frame = +1
Query: 93 GLWNLGNTCFLNSVLQ----CLTYTEPLAAYLQSGKHKSSCHIAGFCALCAIQNHVSCAL 148
GL N GNTC+ NSVLQ C+ + E L Y + K L + + +S
Sbjct: 241 GLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKTLGDAEENLLTCLADLFSQISSQK 420
Query: 149 QATGRIVSPQDMVGNLR 165
+ TG +++P+ V L+
Sbjct: 421 KKTG-VIAPKRFVQRLK 468
>BG644881 similar to GP|6648604|gb| ubiquitin-specific protease; UBP5
{Arabidopsis thaliana}, partial (20%)
Length = 767
Score = 79.3 bits (194), Expect = 5e-15
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Frame = -3
Query: 273 EKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRF-YAHDPNIKIKKKVRFD-SALNLKP 330
E ++C +CK++ QA K+L + + P VL IHLKRF Y+ K++ V F +L
Sbjct: 528 EDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTN 349
Query: 331 FVSGSSDGDVK-YSLYGVLVHSGFSTHSGHYYCYVR-TSNNMWYTLDDTRVSHVGEQEVL 388
+++ ++ + Y LY + H G S SGHY +++ N WY DD+ +S + E +V
Sbjct: 348 YIANKNNSRRQVYELYALTNHYG-SMGSGHYTAHIKLLDENRWYNFDDSHISLISEDDVN 172
Query: 389 NQQAYMLFYVRDK 401
AY+LFY R K
Sbjct: 171 TAAAYVLFYRRVK 133
>TC93049 similar to GP|11993488|gb|AAG42762.1 ubiquitin-specific protease 24
{Arabidopsis thaliana}, partial (27%)
Length = 823
Score = 67.4 bits (163), Expect = 2e-11
Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Frame = +1
Query: 255 SLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHKAPYVLAIHLKRF-YAHDPN 313
+++ AL F+A E L G Y + A K + I P V+ +HL RF Y +
Sbjct: 28 TIEDALHLFSAPETL*G----YRASVSGKAGTAKKSIKIKTLPKVMILHLMRFGYGSQGS 195
Query: 314 IKIKKKVRF--DSALNLKPFVSGSSDGDVKYSLYGVLVHSGFSTHSGHYYCYVRTSNNMW 371
K+ K V F + L VS S++G KY L + H G GHY + N W
Sbjct: 196 TKLLKPVHFPLELVLGRDLLVSPSTEGR-KYELVATITHHGREPSKGHYTADAQYPNGRW 372
Query: 372 YTLDDTRVSHVGEQEVLNQQAYMLFY 397
DD V + +VL+ QAY+LFY
Sbjct: 373 LRFDDASVFAIATNKVLHDQAYVLFY 450
>AW690560 similar to GP|11993482|gb| ubiquitin-specific protease 21
{Arabidopsis thaliana}, partial (6%)
Length = 639
Score = 67.4 bits (163), Expect = 2e-11
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +1
Query: 348 LVHSGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVR 399
+VH+G S+ SGHY+C+VRT+ + W+ LDD+ V+ V E VL+Q+AY+LFY R
Sbjct: 1 VVHNGTSSDSGHYFCFVRTAPDTWHKLDDSMVTKVSEGTVLSQEAYILFYAR 156
>BQ122314
Length = 453
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/83 (36%), Positives = 53/83 (63%)
Frame = +2
Query: 326 LNLKPFVSGSSDGDVKYSLYGVLVHSGFSTHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQ 385
L+L+P+ + + D KY LY ++ H G S SG++ Y+R+++ W ++DT V+ V E+
Sbjct: 17 LDLQPYTNDADDVPWKYDLYAMVEHIGDSPDSGNWVFYIRSASGQWLLMNDTEVTQVDEE 196
Query: 386 EVLNQQAYMLFYVRDKKSITPRK 408
VL ++A++L Y+R K TP +
Sbjct: 197 VVLRKEAWLLIYLR--KEDTPSR 259
>TC90777 weakly similar to GP|15810655|gb|AAL07252.1 putative ubiquitin
carboxyl terminal hydrolase {Arabidopsis thaliana},
partial (21%)
Length = 962
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +3
Query: 93 GLWNLGNTCFLNSVLQCLTYTEPLAAYLQSGKHKSSCHIAGFCALCAIQNHVSCALQATG 152
GL N GN+CF N VLQCL++T PL AYL H++ C +C LC ++HV A +
Sbjct: 729 GLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRNECTCNDWCFLCEFESHVERA-RLXS 905
Query: 153 RIVSPQDMVGNL 164
+ SP +++ L
Sbjct: 906 QAXSPMNILSXL 941
>TC80588 similar to GP|23617092|dbj|BAC20775. putative ubiquitin
carboxyl-terminal hydrolase {Oryza sativa (japonica
cultivar-group)}, partial (30%)
Length = 1110
Score = 58.9 bits (141), Expect = 8e-09
Identities = 36/91 (39%), Positives = 51/91 (55%), Gaps = 10/91 (10%)
Frame = +1
Query: 300 LAIHLKRF---YAHDPNIKIKKKVRFDSALNLK----PFVSGSSDGDVK--YSLYGVLVH 350
L + LKRF + D +KI + F S L+L ++S +D V+ Y+L+ VLVH
Sbjct: 1 LQLQLKRFEYDFMRDTMVKINDRYEFPSQLDLDRENGKYLSPDADRSVRNLYTLHSVLVH 180
Query: 351 SGFSTHSGHYYCYVR-TSNNMWYTLDDTRVS 380
SG H GHYY ++R T + WY DD RV+
Sbjct: 181 SG-GVHGGHYYAFIRPTLSEQWYKFDDERVT 270
>TC93092 similar to GP|16944687|emb|CAD11412. conserved hypothetical protein
{Neurospora crassa}, partial (17%)
Length = 714
Score = 58.9 bits (141), Expect = 8e-09
Identities = 38/112 (33%), Positives = 57/112 (49%), Gaps = 6/112 (5%)
Frame = +1
Query: 285 VQAVKQLTIHKAPYVLAIHLKRF---YAHDPNIKIKKKVRFDSALNLKPFVSGSSDGDVK 341
+ A K + P VL + LKRF D +KI + F + PF+S +D
Sbjct: 7 LDANKGVIFQSFPNVLHLQLKRFEYDIQRDMMMKINDRYEFPEFFDAAPFLSEDADKSEP 186
Query: 342 --YSLYGVLVHSGFSTHSGHYYCYVRTSNNMW-YTLDDTRVSHVGEQEVLNQ 390
Y L+GVLVHSG ++GHYY +++ + W Y DD +V+ +EVL +
Sbjct: 187 WTYQLHGVLVHSG-DLNAGHYYAFLKPEKDGWFYKYDDDKVTKATMREVLEE 339
>TC80250 similar to GP|11993490|gb|AAG42763.1 ubiquitin-specific protease 25
{Arabidopsis thaliana}, partial (24%)
Length = 690
Score = 57.4 bits (137), Expect = 2e-08
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 93 GLWNLGNTCFLNSVLQCLTYTEPLAAYLQSGKHKSSCHIAG-FCALCAIQNHVSCALQ 149
GL NLGN+C+LNSVLQCLT+T PLA + H S C +G C C ++ ++ L+
Sbjct: 211 GLRNLGNSCYLNSVLQCLTFTPPLANFCLRSLHSSLCDNSGSSCPFCILEKQITRLLR 384
>TC91406 similar to GP|4115922|gb|AAD03433.1| contains similarity to
ubiquitin carboxyl-terminal hydrolase family 2, partial
(27%)
Length = 1000
Score = 47.4 bits (111), Expect = 2e-05
Identities = 20/28 (71%), Positives = 23/28 (81%)
Frame = +3
Query: 92 AGLWNLGNTCFLNSVLQCLTYTEPLAAY 119
AGL NLGNTCF+NS LQCL +T PLA +
Sbjct: 93 AGLQNLGNTCFMNSALQCLVHTPPLAEF 176
>CA923073 similar to GP|11993469|gb| ubiquitin-specific protease 8
{Arabidopsis thaliana}, partial (10%)
Length = 700
Score = 47.0 bits (110), Expect = 3e-05
Identities = 20/61 (32%), Positives = 35/61 (56%)
Frame = -3
Query: 354 STHSGHYYCYVRTSNNMWYTLDDTRVSHVGEQEVLNQQAYMLFYVRDKKSITPRKPVNIA 413
S GHY +V + WY DD+RV + ++++ + AY+LFY R + +T R+ +I
Sbjct: 683 SMGGGHYTAFVHHGGDQWYDFDDSRVYPISKEKIKSSAAYVLFYRRVSEVLTERRE*HIV 504
Query: 414 K 414
+
Sbjct: 503 Q 501
>AA660279 similar to GP|11993492|g ubiquitin-specific protease 26
{Arabidopsis thaliana}, partial (13%)
Length = 568
Score = 43.1 bits (100), Expect = 4e-04
Identities = 21/64 (32%), Positives = 36/64 (55%)
Frame = +2
Query: 236 ASNKFDPFLDLSLEILKADSLQKALANFTAAELLDGGEKQYHCQRCKQKVQAVKQLTIHK 295
AS+K + F +L L + SL ++L ++ E L+G + QY C+ CK +V A + + +
Sbjct: 275 ASSKMEDFYELELNVKGLKSLDESLDDYLTVEELNG-DNQYFCESCKTRVDATRSIKLRT 451
Query: 296 APYV 299
P V
Sbjct: 452 LPDV 463
>BQ148032 similar to GP|13374862|em ubiquitin-specific protease-like protein
{Arabidopsis thaliana}, partial (22%)
Length = 678
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3
Query: 82 SLGITFRRIGAGLWNLGNTCFLNSVLQCLTYTEPLAAY 119
SLG+T GL NLGNTCF+NS +QCL +T L +
Sbjct: 42 SLGLT------GLHNLGNTCFMNSAIQCLAHTPKLVDF 137
>TC78265 similar to GP|11993467|gb|AAG42752.1 ubiquitin-specific protease 7
{Arabidopsis thaliana}, partial (44%)
Length = 778
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/34 (52%), Positives = 22/34 (63%)
Frame = +3
Query: 92 AGLWNLGNTCFLNSVLQCLTYTEPLAAYLQSGKH 125
AGL+NLGNTC++NS LQCL L + L H
Sbjct: 423 AGLFNLGNTCYMNSTLQCLHSVPELKSALIDYSH 524
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,018,203
Number of Sequences: 36976
Number of extensions: 383522
Number of successful extensions: 1967
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of query: 835
length of database: 9,014,727
effective HSP length: 104
effective length of query: 731
effective length of database: 5,169,223
effective search space: 3778702013
effective search space used: 3778702013
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC122160.3