BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.9 + phase: 2 /pseudo/partial
(223 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78976 similar to GP|10178188|dbj|BAB11662. poly(A)-binding pro... 458 e-130
TC78233 similar to GP|15809838|gb|AAL06847.1 AT5g51120/MWD22_6 {... 271 2e-73
AL370489 similar to GP|10178188|db poly(A)-binding protein II-li... 204 2e-53
TC87798 similar to GP|15809838|gb|AAL06847.1 AT5g51120/MWD22_6 {... 87 1e-26
TC78172 homologue to SP|P38385|S61G_ORYSA Protein transport prot... 97 6e-21
TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 71 4e-13
AJ388802 similar to GP|12321948|gb| unknown protein; 13339-10119... 64 5e-11
AL370490 similar to GP|10178188|dbj poly(A)-binding protein II-l... 57 6e-09
BE203113 weakly similar to GP|18026763|gb| phragmoplastin-intera... 52 1e-07
TC77637 similar to GP|15292697|gb|AAK92717.1 putative RNA-bindin... 50 5e-07
BI264305 weakly similar to PIR|T45516|T455 probable RNA-binding ... 50 7e-07
TC81341 similar to GP|15292697|gb|AAK92717.1 putative RNA-bindin... 50 7e-07
TC84024 similar to PIR|S77714|S77714 RNA-binding protein precurs... 48 3e-06
TC87747 weakly similar to PIR|C84768|C84768 hypothetical protein... 47 6e-06
TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 47 8e-06
TC90347 similar to GP|10334491|emb|CAC10207. putative splicing f... 45 2e-05
TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding pr... 44 5e-05
TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava ... 44 6e-05
TC86712 similar to GP|17528972|gb|AAL38696.1 putative RNA-bindin... 43 8e-05
TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding pro... 43 8e-05
>TC78976 similar to GP|10178188|dbj|BAB11662. poly(A)-binding protein
II-like {Arabidopsis thaliana}, partial (67%)
Length = 1676
Score = 458 bits (1178), Expect = e-130
Identities = 223/223 (100%), Positives = 223/223 (100%)
Frame = +2
Query: 1 KRGICRSVPGLKPQLDDGVPFCD*DMENDDVDMIGADNNEADLDDMKKRLKEMEDEAAAL 60
KRGICRSVPGLKPQLDDGVPFCD*DMENDDVDMIGADNNEADLDDMKKRLKEMEDEAAAL
Sbjct: 8 KRGICRSVPGLKPQLDDGVPFCD*DMENDDVDMIGADNNEADLDDMKKRLKEMEDEAAAL 187
Query: 61 KEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVN 120
KEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVN
Sbjct: 188 KEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVN 367
Query: 121 RVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPR 180
RVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPR
Sbjct: 368 RVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPR 547
Query: 181 RPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRMGMRYSPY 223
RPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRMGMRYSPY
Sbjct: 548 RPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRMGMRYSPY 676
>TC78233 similar to GP|15809838|gb|AAL06847.1 AT5g51120/MWD22_6 {Arabidopsis
thaliana}, partial (66%)
Length = 1183
Score = 271 bits (692), Expect = 2e-73
Identities = 142/214 (66%), Positives = 170/214 (79%), Gaps = 15/214 (7%)
Frame = +3
Query: 25 DMENDDVDM---IGADNNEAD-----------LDDMKKRLKEMEDEAAALKEMQAKVEKE 70
D+ +++VDM I A++ E D L+DMKKRLKE+E+EA+AL+EMQAKVEKE
Sbjct: 138 DIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKE 317
Query: 71 MGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFG 130
MG+VQDPA +S SQ +EEVDARSI+VGNVDYACTPE+VQQHFQSCGTVNRVTI TDKFG
Sbjct: 318 MGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG 497
Query: 131 QPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFR 190
QPKG+AYVEFVE +AVQ AL+LNE+ELHGRQLKV+AKRTNVPG+KQ+ RRP+ GFR
Sbjct: 498 QPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQY-GRRPA----GFR 662
Query: 191 GRTPYAP-PFAYAPAPYGYGKIPRFRMGMRYSPY 223
GR P+ P PF PY YG++PR+R RY PY
Sbjct: 663 GRRPFMPAPFF---PPYAYGRVPRYRRPTRYRPY 755
>AL370489 similar to GP|10178188|db poly(A)-binding protein II-like
{Arabidopsis thaliana}, partial (62%)
Length = 464
Score = 204 bits (520), Expect = 2e-53
Identities = 102/131 (77%), Positives = 117/131 (88%), Gaps = 3/131 (2%)
Frame = +1
Query: 30 DVDMIGADNNEA---DLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQIN 86
DVDM AD+ +LD+M++RLKEME+EAAAL+EM AKVEKE+GSVQDPA+ +ASQ N
Sbjct: 70 DVDMSAADDEAGGMKELDEMRRRLKEMEEEAAALREMHAKVEKEIGSVQDPASVAASQEN 249
Query: 87 REEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAV 146
+EE DARS+FVGNVDYACTPE+VQQHFQSCGTVNRVTI TDKFGQPKG+AYVEFVE EAV
Sbjct: 250 KEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAV 429
Query: 147 QEALLLNESEL 157
QEALLL+ESEL
Sbjct: 430 QEALLLSESEL 462
>TC87798 similar to GP|15809838|gb|AAL06847.1 AT5g51120/MWD22_6 {Arabidopsis
thaliana}, partial (33%)
Length = 1175
Score = 87.4 bits (215), Expect(2) = 1e-26
Identities = 47/96 (48%), Positives = 60/96 (61%), Gaps = 7/96 (7%)
Frame = +3
Query: 45 DMKKRLKEMEDEAAALKEMQAKVEKEMGS-------VQDPANASASQINREEVDARSIFV 97
D + R E ++A K A + +M S V+ PA +S + E+ ARSI V
Sbjct: 774 DPRTRFNYREKMSSADKYFNAGSQLQMSSWVDREDIVRGPAGSSVPHVANEDTYARSIHV 953
Query: 98 GNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPK 133
GNV YACTP++VQQHFQSCGTVNRV I TDKFG+P+
Sbjct: 954 GNVHYACTPKEVQQHFQSCGTVNRVKILTDKFGRPE 1061
Score = 48.9 bits (115), Expect(2) = 1e-26
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +1
Query: 133 KGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTN 170
KG+A VEFVE +AVQ AL LN SELHGR L V++K T+
Sbjct: 1060 KGFACVEFVEADAVQNALGLNGSELHGRLLNVSSKCTH 1173
>TC78172 homologue to SP|P38385|S61G_ORYSA Protein transport protein SEC61
gamma subunit. [Rice] {Oryza sativa}, complete
Length = 733
Score = 96.7 bits (239), Expect = 6e-21
Identities = 46/63 (73%), Positives = 47/63 (74%)
Frame = -1
Query: 151 LLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGK 210
LL+ESELHGRQLKVTAK TNVPGMKQFRPRRPSNPYMG P F YGYGK
Sbjct: 190 LLDESELHGRQLKVTAKXTNVPGMKQFRPRRPSNPYMGISRXNSICPSFCLCSRSYGYGK 11
Query: 211 IPR 213
IPR
Sbjct: 10 IPR 2
>TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (69%)
Length = 1615
Score = 70.9 bits (172), Expect = 4e-13
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Frame = +3
Query: 28 NDDVDMIGADNNEADLDDMKKRLKEMEDEAAALKEMQAKVEKEM----GSVQDPANASAS 83
+DD D + D + +D D+ ++ E EDE + + + K + EM S + N A+
Sbjct: 360 SDDEDKMNVDKDGSDSDESEE---ESEDEPSKTPQKKIK-DVEMVDAGKSGKKAPNTPAT 527
Query: 84 QINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEV 143
I E ++++FVGN+ ++ D+++ FQ CG V V +D+ G+ KG+ +VEF
Sbjct: 528 PI--ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASA 701
Query: 144 EAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSN 184
EA Q AL +N EL R +++ R F P SN
Sbjct: 702 EAAQSALEMNGQELLQRAVRLDLARER----GAFTPNNNSN 812
Score = 50.4 bits (119), Expect = 5e-07
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Frame = +3
Query: 52 EMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQ- 110
EM + + ++ + +E G+ N++ S + ++++FV D ++++
Sbjct: 723 EMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRA 902
Query: 111 ---QHFQ-SCGTVNRVTIRTD-KFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKV 164
+HF +CG RV+I D + G KG+AY++F + ++ +AL L+ESEL G QL V
Sbjct: 903 KLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQLSV 1079
>AJ388802 similar to GP|12321948|gb| unknown protein; 13339-10119
{Arabidopsis thaliana}, partial (12%)
Length = 601
Score = 63.9 bits (154), Expect = 5e-11
Identities = 36/91 (39%), Positives = 51/91 (55%), Gaps = 1/91 (1%)
Frame = +1
Query: 80 ASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYV 138
+SA+ ++ D+R+IF NV +A T + + +HF G V + I TD G+PKG AYV
Sbjct: 205 SSAASCPLDDADSRTIFASNVHFAATKDAICRHFNKFGEVLKAVIVTDSITGKPKGAAYV 384
Query: 139 EFVEVEAVQEALLLNESELHGRQLKVTAKRT 169
EF+ EA AL L+ + R LK K T
Sbjct: 385 EFMYKEAADNALSLDGTSFMSRILKXVRKST 477
>AL370490 similar to GP|10178188|dbj poly(A)-binding protein II-like
{Arabidopsis thaliana}, partial (18%)
Length = 500
Score = 57.0 bits (136), Expect = 6e-09
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = +3
Query: 179 PRRPSNPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRMGMRYSPY 223
PRR NPYM + R PYAPP+ Y +PYGYGK PR+R RY PY
Sbjct: 3 PRR-FNPYMAYGFRRPYAPPYMY--SPYGYGKAPRYRRPNRYMPY 128
>BE203113 weakly similar to GP|18026763|gb| phragmoplastin-interacting
protein PHIP1 {Arabidopsis thaliana}, partial (11%)
Length = 548
Score = 52.4 bits (124), Expect = 1e-07
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +1
Query: 47 KKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTP 106
K + E +A +E + ++EM + AN + + A ++VG + Y +
Sbjct: 58 KNKTAEENGKAKIAEENDSNHQEEMPQSVELANTTTTTSQENGDVATKVYVGGIPYYSSE 237
Query: 107 EDVQQHFQSCGTVNRVTIRT-DKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKV 164
+D+ +F+ CGT+ + T G+ +G A + F A + AL L+ +++ G LK+
Sbjct: 238 DDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKI 414
>TC77637 similar to GP|15292697|gb|AAK92717.1 putative RNA-binding protein
{Arabidopsis thaliana}, partial (59%)
Length = 1724
Score = 50.4 bits (119), Expect = 5e-07
Identities = 40/138 (28%), Positives = 65/138 (46%), Gaps = 8/138 (5%)
Frame = +2
Query: 93 RSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFVEVEAVQEALL 151
R IFVG + T D +++F GT+ V + D Q P+G+ ++ + EAV + LL
Sbjct: 686 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLL 865
Query: 152 LNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPF------AYAPAP 205
EL+G+ ++V + VP K+ P +P G+ F +Y+P+
Sbjct: 866 KTFHELNGKMVEV---KRAVP--KELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPST 1030
Query: 206 Y-GYGKIPRFRMGMRYSP 222
GYG R+ R+SP
Sbjct: 1031VGGYG----LRVDGRFSP 1072
>BI264305 weakly similar to PIR|T45516|T455 probable RNA-binding protein sce3
- fission yeast (Schizosaccharomyces pombe), partial
(9%)
Length = 662
Score = 50.1 bits (118), Expect = 7e-07
Identities = 21/68 (30%), Positives = 39/68 (56%)
Frame = +2
Query: 97 VGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESE 156
+GN+ Y T + V ++ CG +N I + +PKG+ YVEF ++ +++AL +
Sbjct: 50 LGNLSYDVTNDAVGEYLADCGVINVRLIEDRELQRPKGFGYVEFETLDGLKKALTFDGEN 229
Query: 157 LHGRQLKV 164
+GR +K+
Sbjct: 230 FNGRMIKI 253
>TC81341 similar to GP|15292697|gb|AAK92717.1 putative RNA-binding protein
{Arabidopsis thaliana}, partial (37%)
Length = 953
Score = 50.1 bits (118), Expect = 7e-07
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 1/140 (0%)
Frame = +2
Query: 51 KEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQ 110
+ +E + A ++ Q + ++ GSVQ + + IFVG + T D +
Sbjct: 476 RTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRT---------KKIFVGGLPSTITESDFK 628
Query: 111 QHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRT 169
+F GT+ V + D Q P+G+ ++ + EAV L EL+G+ ++V +
Sbjct: 629 MYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEV---KR 799
Query: 170 NVPGMKQFRPRRPSNPYMGF 189
VP K+ P +P +G+
Sbjct: 800 AVP--KELSPGPTRSPLIGY 853
>TC84024 similar to PIR|S77714|S77714 RNA-binding protein precursor 33K -
wood tobacco, partial (55%)
Length = 867
Score = 47.8 bits (112), Expect = 3e-06
Identities = 35/149 (23%), Positives = 66/149 (43%), Gaps = 9/149 (6%)
Frame = +3
Query: 50 LKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEV-------DARSIFVGNVDY 102
L+ + A E + + + Q+P ++ + ++E DA ++VGN+ +
Sbjct: 183 LQSLHPPFVATDEFETSQDTIISQQQEPEPETSDKPKQDEEQKVTTSDDAGRLYVGNLPF 362
Query: 103 ACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEAL-LLNESELHGR 160
+ T + F GTV V I D+ + +G+A+V E +EA+ + + S++ GR
Sbjct: 363 SMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGR 542
Query: 161 QLKVTAKRTNVPGMKQFRPRRPSNPYMGF 189
KV G + ++ N Y GF
Sbjct: 543 SAKVNFPEVPKGGERLVMGQKVRNSYRGF 629
>TC87747 weakly similar to PIR|C84768|C84768 hypothetical protein At2g35410
[imported] - Arabidopsis thaliana, partial (53%)
Length = 1177
Score = 47.0 bits (110), Expect = 6e-06
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Frame = +1
Query: 50 LKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDV 109
L+E+ + +A +E +AK E + +V+ +++ V N+ ++ + D+
Sbjct: 226 LQEVTEASATTEEEEAKTET-LNNVK-----------------KNLIVFNLPWSLSKPDI 351
Query: 110 QQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEAL-LLNESELHGRQLKVTAKR 168
+ F CGTV V I K G+ KGY +V E Q A+ N +E+ GR L+V +
Sbjct: 352 KDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKFNATEISGRILRVEFAK 531
Query: 169 TNVPGMKQFRPRRPS 183
G K+ RP P+
Sbjct: 532 ----GFKKPRPPPPA 564
>TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (69%)
Length = 1504
Score = 46.6 bits (109), Expect = 8e-06
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 10/182 (5%)
Frame = +3
Query: 41 ADLDDMKKRLKEMEDEAAALKEMQA--KVEKEMGSVQDPA---NASASQINREEVDARSI 95
AD + + + EM+ + + M+ K +G+ A N N + + +I
Sbjct: 687 ADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTI 866
Query: 96 FVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEAL-LLNE 154
FVGN+D T E ++Q F G + V K K +V+F + + +EAL +LN
Sbjct: 867 FVGNLDPNVTDEHLKQVFTQYGELVHV-----KIPSGKRCGFVQFADRSSAEEALRVLNG 1031
Query: 155 SELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYAPA----PYGYGK 210
+ L G+ ++++ R+ Q P + + F G +AYAP P YG
Sbjct: 1032TLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSSYFGGYAQGYENYAYAPPAGQDPNMYGS 1211
Query: 211 IP 212
P
Sbjct: 1212YP 1217
Score = 28.9 bits (63), Expect = 1.6
Identities = 14/61 (22%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Frame = +3
Query: 91 DARSIFVGNVDYACTPEDVQQHFQSCGTVNRV-TIRTDKFGQPKGYAYVEFVEVEAVQEA 149
+ +++++G++ Y + F G V V IR + Q +GY ++EF+ +
Sbjct: 252 EVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERV 431
Query: 150 L 150
L
Sbjct: 432 L 434
>TC90347 similar to GP|10334491|emb|CAC10207. putative splicing factor
{Cicer arietinum}, partial (53%)
Length = 908
Score = 45.1 bits (105), Expect = 2e-05
Identities = 24/76 (31%), Positives = 45/76 (58%), Gaps = 2/76 (2%)
Frame = +1
Query: 93 RSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFVEVEAVQEALL 151
R ++VGN+ + T +++ F+ GTV V + D + G KG+ +++F +E + A
Sbjct: 313 RKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQS 492
Query: 152 LN-ESELHGRQLKVTA 166
LN + E+ GR +KV++
Sbjct: 493 LNGKLEIAGRTIKVSS 540
>TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding protein -
garden pea, partial (89%)
Length = 813
Score = 43.9 bits (102), Expect = 5e-05
Identities = 23/96 (23%), Positives = 49/96 (50%), Gaps = 2/96 (2%)
Frame = +3
Query: 72 GSVQDPANASASQINR-EEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDK-F 129
G+ Q +S +N + + +F+G + Y + ++ F + G V + TD+
Sbjct: 120 GATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRET 299
Query: 130 GQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVT 165
G+ +G+ +V F E+ AL ++ +L+GR ++V+
Sbjct: 300 GRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVS 407
>TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava bean
(fragment), partial (90%)
Length = 1214
Score = 43.5 bits (101), Expect = 6e-05
Identities = 25/73 (34%), Positives = 41/73 (55%), Gaps = 2/73 (2%)
Frame = +1
Query: 95 IFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFVEVEAVQEAL-LL 152
+FVGN+ + T E + Q FQ GTV + D + G+ +GY +V + + AL ++
Sbjct: 670 LFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIM 849
Query: 153 NESELHGRQLKVT 165
+ EL GR L+V+
Sbjct: 850 DNVELEGRTLRVS 888
>TC86712 similar to GP|17528972|gb|AAL38696.1 putative RNA-binding protein
{Arabidopsis thaliana}, partial (51%)
Length = 2144
Score = 43.1 bits (100), Expect = 8e-05
Identities = 22/76 (28%), Positives = 40/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 90 VDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFVEVEAVQE 148
+ + IFVG + T D + +F GT+ V + D Q P+G+ ++ + EAV++
Sbjct: 480 IRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEK 659
Query: 149 ALLLNESELHGRQLKV 164
L EL+G+ ++V
Sbjct: 660 VLHKTFHELNGKMVEV 707
Score = 38.5 bits (88), Expect = 0.002
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +3
Query: 89 EVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFVEVEAVQ 147
E+D +F+G + + + ++Q+FQ+ G V I D+ G+ +G+ +V F + +V
Sbjct: 171 EMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFAD-PSVA 347
Query: 148 EALLLNESELHGRQLK 163
E +++ + + GR ++
Sbjct: 348 ERVVMEKHVIDGRTVE 395
>TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding protein
{Nicotiana tabacum}, partial (97%)
Length = 2581
Score = 43.1 bits (100), Expect = 8e-05
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Frame = +3
Query: 71 MGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFG 130
M S +DP+ + Q N IF+ N+D A + + F S G + + D G
Sbjct: 666 MYSHRDPSIRKSGQGN--------IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSG 821
Query: 131 QPKGYAYVEFVEVEAVQEA------LLLNESELH 158
Q KGY +V+F EA Q+A +LLN+ +++
Sbjct: 822 QSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVY 923
Score = 40.8 bits (94), Expect = 4e-04
Identities = 37/165 (22%), Positives = 65/165 (38%), Gaps = 5/165 (3%)
Frame = +3
Query: 39 NEADLDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASASQINREEVDARSIFVG 98
N +DD + + + + ++ E++ K E+ M D + +++V
Sbjct: 1164 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAAD------------KYQGANLYVK 1307
Query: 99 NVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALL-LNESEL 157
N+D + E +++ F S GT+ + D G +G +V F E ALL +N +
Sbjct: 1308 NLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMV 1487
Query: 158 HGRQLKVTAKRTNVPG----MKQFRPRRPSNPYMGFRGRTPYAPP 198
+ L VT + QF RP + R P PP
Sbjct: 1488 ASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPPSVAPRMPMYPP 1622
Score = 31.2 bits (69), Expect = 0.33
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 94 SIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEAL 150
++FV N+ + T +++++ F GT+ + D G+ K + +V F + A+
Sbjct: 984 NVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAV 1154
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,669,700
Number of Sequences: 36976
Number of extensions: 70259
Number of successful extensions: 485
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of query: 223
length of database: 9,014,727
effective HSP length: 93
effective length of query: 130
effective length of database: 5,575,959
effective search space: 724874670
effective search space used: 724874670
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Medicago: description of AC121245.9