BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.5 + phase: 0
(72 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC93805 weakly similar to GP|11994269|dbj|BAB01452. ABC transpor... 141 4e-35
TC81334 weakly similar to GP|19423992|gb|AAL87274.1 putative ABC... 96 2e-21
TC91754 similar to GP|20260310|gb|AAM13053.1 unknown protein {Ar... 71 9e-14
TC79905 similar to GP|19423992|gb|AAL87274.1 putative ABC transp... 60 1e-10
TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20 ... 55 5e-09
BF635046 similar to PIR|D84680|D84 probable ABC transporter [imp... 54 1e-08
AW560126 similar to GP|15292753|gb putative ABC transporter prot... 50 2e-07
BI269025 weakly similar to GP|19887018|gb| Homolog of ABC-type n... 46 3e-06
TC86206 similar to GP|20522008|dbj|BAB92011. pleiotropic drug re... 44 2e-05
TC86205 similar to PIR|A86289|A86289 probable ABC transporter [i... 44 2e-05
TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {... 41 1e-04
TC92726 similar to PIR|T04229|T04229 ABC-type transport protein ... 40 2e-04
TC81415 weakly similar to PIR|A84509|A84509 probable ABC transpo... 38 8e-04
TC79932 similar to GP|15912315|gb|AAL08291.1 AT5g64840/MXK3_6 {A... 37 0.001
TC89935 similar to GP|16604683|gb|AAL24134.1 putative ABC transp... 37 0.001
TC93321 similar to GP|4586576|dbj|BAA76420.1 multidrug resistanc... 36 0.002
TC93190 similar to GP|14209574|dbj|BAB56070. putative ABC-type t... 36 0.002
TC81187 similar to PIR|T47613|T47613 ABC transporter-like protei... 35 0.004
TC77250 homologue to GP|20466462|gb|AAM20548.1 RNase L inhibitor... 35 0.005
TC79211 similar to GP|4204793|gb|AAD10836.1| P-glycoprotein {Sol... 31 0.079
>TC93805 weakly similar to GP|11994269|dbj|BAB01452. ABC transporter-like
protein {Arabidopsis thaliana}, partial (15%)
Length = 649
Score = 141 bits (356), Expect = 4e-35
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = +2
Query: 1 MKREKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKST 60
MKREKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKST
Sbjct: 167 MKREKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKST 346
Query: 61 LLDTLAG 67
LLDTLAG
Sbjct: 347 LLDTLAG 367
>TC81334 weakly similar to GP|19423992|gb|AAL87274.1 putative ABC
transporter protein {Arabidopsis thaliana}, partial
(29%)
Length = 977
Score = 96.3 bits (238), Expect = 2e-21
Identities = 50/68 (73%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Frame = +2
Query: 2 KREKEDEVDGTCLTWKDIWVN-TISNGK-NGSKSILQGLTGYAKPGQLLAIMGPSGCGKS 59
K+ E G CLTWKD+WV + S GK N SKSILQGLTGYAKP QLLAIMGPSGCGKS
Sbjct: 32 KKMNGGEEKGVCLTWKDLWVTVSASTGKTNESKSILQGLTGYAKPAQLLAIMGPSGCGKS 211
Query: 60 TLLDTLAG 67
TLLD LAG
Sbjct: 212TLLDALAG 235
>TC91754 similar to GP|20260310|gb|AAM13053.1 unknown protein {Arabidopsis
thaliana}, partial (25%)
Length = 663
Score = 70.9 bits (172), Expect = 9e-14
Identities = 33/57 (57%), Positives = 44/57 (76%)
Frame = +2
Query: 11 GTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
G+ L W+D+ V + GK +K +L GL G+A+PG+++AIMGPSG GKSTLLDTLAG
Sbjct: 131 GSFLAWEDLRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 301
>TC79905 similar to GP|19423992|gb|AAL87274.1 putative ABC transporter
protein {Arabidopsis thaliana}, partial (10%)
Length = 799
Score = 60.5 bits (145), Expect = 1e-10
Identities = 31/51 (60%), Positives = 40/51 (77%), Gaps = 1/51 (1%)
Frame = +3
Query: 14 LTWKDIWVN-TISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLD 63
LTWKD+ V T+SNG+ +++L+ LTGYA+PG A+MGPSG GKSTLLD
Sbjct: 648 LTWKDLTVMVTLSNGE--IQNVLENLTGYAEPGYXTALMGPSGSGKSTLLD 794
>TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20
{Arabidopsis thaliana}, partial (44%)
Length = 1366
Score = 55.1 bits (131), Expect = 5e-09
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +3
Query: 8 EVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+V + W +I + + +L+ L+G AKPG+LLAIMGPSG GK+TLL+ LAG
Sbjct: 324 KVTPVTIRWNNINCSLSDKSSKSVRFLLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAG 503
>BF635046 similar to PIR|D84680|D84 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (21%)
Length = 654
Score = 53.9 bits (128), Expect = 1e-08
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +1
Query: 8 EVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
++ G + WKD+ V TI + S +++ TGYA PG L IMGP+ GKSTLL +AG
Sbjct: 466 KIAGASVAWKDLTV-TIKGKRKYSDKVIKSSTGYALPGTLTVIMGPAKSGKSTLLRAIAG 642
>AW560126 similar to GP|15292753|gb putative ABC transporter protein
{Arabidopsis thaliana}, partial (17%)
Length = 727
Score = 50.1 bits (118), Expect = 2e-07
Identities = 23/34 (67%), Positives = 29/34 (84%)
Frame = +3
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
IL +TG A PG++LAI+GPSG GKSTLL++LAG
Sbjct: 372 ILNNVTGIAYPGEILAILGPSGSGKSTLLNSLAG 473
>BI269025 weakly similar to GP|19887018|gb| Homolog of ABC-type
nitrate/sulfonate/taurine/bicarbonate transport systems
ATPase component, partial (25%)
Length = 275
Score = 45.8 bits (107), Expect = 3e-06
Identities = 21/46 (45%), Positives = 28/46 (60%)
Frame = +1
Query: 25 SNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTNK 70
S + ++ G T K G+L+A++GPSGCGKSTLL AG K
Sbjct: 67 STSTSADLPVVDGFTSEFKTGELVALVGPSGCGKSTLLHLAAGLEK 204
>TC86206 similar to GP|20522008|dbj|BAB92011. pleiotropic drug resistance
like protein {Nicotiana tabacum}, partial (11%)
Length = 757
Score = 43.5 bits (101), Expect = 2e-05
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = +3
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+L+G++G +PG L A+MG SG GK+TL+D LAG
Sbjct: 333 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 434
>TC86205 similar to PIR|A86289|A86289 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (52%)
Length = 2721
Score = 43.5 bits (101), Expect = 2e-05
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = +1
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
+L+G++G +PG L A+MG SG GK+TL+D LAG
Sbjct: 760 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 861
>TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {Arabidopsis
thaliana}, partial (82%)
Length = 1699
Score = 40.8 bits (94), Expect = 1e-04
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +1
Query: 3 REKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLL 62
R+ ED+ D + +D++ + G K IL G++ + G+ + I+GPSG GKST+L
Sbjct: 436 RDHEDDSD-VLIECRDVYKSF------GEKKILNGVSFKIRHGEAVGIIGPSGTGKSTIL 594
Query: 63 DTLAG 67
+AG
Sbjct: 595 KIIAG 609
>TC92726 similar to PIR|T04229|T04229 ABC-type transport protein F14M19.30 -
Arabidopsis thaliana, partial (20%)
Length = 585
Score = 39.7 bits (91), Expect = 2e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +1
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
IL+ ++ A P ++LAI+GPSG GKSTLLD L+
Sbjct: 187 ILKDVSLTAYPSEILAIVGPSGAGKSTLLDILS 285
>TC81415 weakly similar to PIR|A84509|A84509 probable ABC transporter
[imported] - Arabidopsis thaliana, partial (13%)
Length = 702
Score = 37.7 bits (86), Expect = 8e-04
Identities = 17/38 (44%), Positives = 28/38 (72%)
Frame = +2
Query: 33 SILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTNK 70
+IL+ ++ A+ +++A++GPSG GKSTLL +AG K
Sbjct: 233 NILKSVSFVARTSEIVAVVGPSGTGKSTLLRIIAGRIK 346
>TC79932 similar to GP|15912315|gb|AAL08291.1 AT5g64840/MXK3_6 {Arabidopsis
thaliana}, partial (44%)
Length = 1134
Score = 37.0 bits (84), Expect = 0.001
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 45 GQLLAIMGPSGCGKSTLLDTLAGTNK 70
G+ +AI+GP+GCGKSTLL + G K
Sbjct: 208 GEKIAILGPNGCGKSTLLKLIMGLEK 285
>TC89935 similar to GP|16604683|gb|AAL24134.1 putative ABC transporter
protein {Arabidopsis thaliana}, partial (34%)
Length = 1244
Score = 37.0 bits (84), Expect = 0.001
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +3
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
+L+ +TG +PG L A+MG SG GK+TL+D +
Sbjct: 957 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVFS 1055
>TC93321 similar to GP|4586576|dbj|BAA76420.1 multidrug resistance protein
{Cicer arietinum}, partial (45%)
Length = 431
Score = 36.2 bits (82), Expect = 0.002
Identities = 18/41 (43%), Positives = 24/41 (57%)
Frame = +2
Query: 22 NTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLL 62
N +G IL+G+T G ++ I+GPSG GKSTLL
Sbjct: 116 NLRKESDDGKLQILKGITVDIPKGMVVGIIGPSGSGKSTLL 238
>TC93190 similar to GP|14209574|dbj|BAB56070. putative ABC-type transport
protein {Oryza sativa (japonica cultivar-group)},
partial (52%)
Length = 667
Score = 36.2 bits (82), Expect = 0.002
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 27 GKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
GK ++L+ + GQ ++GP+GCGKSTLL LAG
Sbjct: 179 GKLRMCTVLRDCSIRIPSGQFWMLLGPNGCGKSTLLKILAG 301
>TC81187 similar to PIR|T47613|T47613 ABC transporter-like protein -
Arabidopsis thaliana, partial (41%)
Length = 1242
Score = 35.4 bits (80), Expect = 0.004
Identities = 22/60 (36%), Positives = 30/60 (49%)
Frame = +1
Query: 7 DEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
D DG KDI + S G K +L+ + G+ ++GP+G GKSTLL LA
Sbjct: 472 DGDDGADANVKDITIENFSVSARG-KELLKNTSVKISHGKRYGLIGPNGMGKSTLLKLLA 648
>TC77250 homologue to GP|20466462|gb|AAM20548.1 RNase L inhibitor-like
protein {Arabidopsis thaliana}, partial (39%)
Length = 836
Score = 35.0 bits (79), Expect = 0.005
Identities = 16/30 (53%), Positives = 21/30 (69%)
Frame = +2
Query: 43 KPGQLLAIMGPSGCGKSTLLDTLAGTNKLN 72
+PGQ+L ++G +G GKST L LAG K N
Sbjct: 383 RPGQVLGLVGTNGIGKSTALKVLAGKLKPN 472
>TC79211 similar to GP|4204793|gb|AAD10836.1| P-glycoprotein {Solanum
tuberosum}, partial (36%)
Length = 1667
Score = 31.2 bits (69), Expect = 0.079
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +1
Query: 43 KPGQLLAIMGPSGCGKSTLL 62
+ G+ LA++GPSGCGKS+++
Sbjct: 760 RAGKTLALVGPSGCGKSSVI 819
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.311 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,266,195
Number of Sequences: 36976
Number of extensions: 22964
Number of successful extensions: 161
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of query: 72
length of database: 9,014,727
effective HSP length: 48
effective length of query: 24
effective length of database: 7,239,879
effective search space: 173757096
effective search space used: 173757096
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC121245.5