
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121241.8 - phase: 0
(972 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC92148 437 e-122
AW689887 homologue to GP|10140744|gb| hypothetical protein {Oryz... 421 e-118
TC87743 similar to GP|15810581|gb|AAL07178.1 putative 2-oxogluta... 34 0.24
TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcr... 32 0.91
TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protei... 32 1.5
TC88509 similar to PIR|T01826|T01826 microfibril-associated prot... 31 2.0
TC77622 similar to SP|Q43292|RL37_ARATH 60S ribosomal protein L3... 31 2.6
TC85746 similar to GP|16226201|gb|AAL16101.1 AT3g63140/T20O10_24... 31 2.6
TC84556 similar to GP|7682783|gb|AAF67364.1| Hypothetical protei... 30 3.4
TC85214 similar to PIR|S26688|S26688 legumin K - garden pea, par... 30 3.4
TC79860 homologue to PIR|T06533|T06533 probable gibberellin 20-o... 30 3.4
BE325336 30 3.4
BE317500 30 4.5
TC90341 similar to GP|21703099|gb|AAM74492.1 At1g76120/T23E18_5 ... 30 4.5
TC80480 similar to GP|4056493|gb|AAC98059.1| chloroplast lumen c... 30 4.5
TC79863 30 4.5
TC89266 weakly similar to GP|18700101|gb|AAL77662.1 AT5g65760/MP... 30 4.5
BG582607 30 5.9
TC87776 similar to GP|8671847|gb|AAF78410.1| ESTs gb|AI993141 g... 30 5.9
TC77715 homologue to GP|15485610|emb|CAC67407. Clp protease 2 pr... 29 7.7
>TC92148
Length = 644
Score = 437 bits (1123), Expect = e-122
Identities = 212/214 (99%), Positives = 212/214 (99%)
Frame = +2
Query: 720 QILFRLEILQSEVGRGIEDSSKQKFVKQICLLLENIQCHMEGGFFGDWNLENYVAKIIKS 779
QILF LEILQSEVGRGIEDSSKQKFVKQICLLLENIQCHMEGGFFGDWNLENYVAKIIKS
Sbjct: 2 QILFPLEILQSEVGRGIEDSSKQKFVKQICLLLENIQCHMEGGFFGDWNLENYVAKIIKS 181
Query: 780 RYSHTLEDIVHKIYNKMDLLLFVNEDEAPDCSFNSEDSSKSLDRKFYGDEMGENDVGNGP 839
RYSHTLEDIVHKIYNKMDLLLFVNEDEAPDCSFNSEDSSKSLDRKFYGDEMGENDVGNGP
Sbjct: 182 RYSHTLEDIVHKIYNKMDLLLFVNEDEAPDCSFNSEDSSKSLDRKFYGDEMGENDVGNGP 361
Query: 840 FSAENKPFHLQKNVRGKLQRNIEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSK 899
FSAENKPFHLQKNVRGKLQRNIEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSK
Sbjct: 362 FSAENKPFHLQKNVRGKLQRNIEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSK 541
Query: 900 IPKRKDRTSACYDTVCETPMTRNTRSMTRNTVCE 933
IPKRKDRTSACYDT CETPMTRNTRSMTRNTVCE
Sbjct: 542 IPKRKDRTSACYDTACETPMTRNTRSMTRNTVCE 643
>AW689887 homologue to GP|10140744|gb| hypothetical protein {Oryza sativa},
partial (3%)
Length = 672
Score = 421 bits (1082), Expect = e-118
Identities = 206/212 (97%), Positives = 206/212 (97%)
Frame = +3
Query: 1 MSSNSDPMIRYSHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSL 60
MSSNSDPMIRYSHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSL
Sbjct: 36 MSSNSDPMIRYSHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSL 215
Query: 61 FAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAAN 120
FAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAAN
Sbjct: 216 FAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAAN 395
Query: 121 LIDSLTQLLHDYPWEPNSDADTDTTTPLVSPNLILLFTPFFNSFNSLAGFFDSDEDSLRI 180
LIDSLTQLLHDYPWEPNSDADTDTTTPLVS NLILLFTPFFNSFNSLAGFFDSDEDSLRI
Sbjct: 396 LIDSLTQLLHDYPWEPNSDADTDTTTPLVSXNLILLFTPFFNSFNSLAGFFDSDEDSLRI 575
Query: 181 ENSFCDRFLGFFGNVSRRFRSKGVHCSWIGVN 212
ENSFCD FL FFGNVS RF SKGVH SWIGVN
Sbjct: 576 ENSFCDXFLXFFGNVSXRFXSKGVHXSWIGVN 671
>TC87743 similar to GP|15810581|gb|AAL07178.1 putative 2-oxoglutarate/malate
translocator protein {Arabidopsis thaliana}, partial
(50%)
Length = 1359
Score = 34.3 bits (77), Expect = 0.24
Identities = 29/104 (27%), Positives = 45/104 (42%)
Frame = +3
Query: 12 SHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLP 71
SH N ++ ++ L +TT++ + + L ++ S F+ FS LP
Sbjct: 189 SHFNCCCSVVPMESFALHSLSTTSSPTFFLHHLHHHRS---------SRPIFRSQFSPLP 341
Query: 72 PHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYN 115
+ S + SFSF STFNL SK P+FP+ N
Sbjct: 342 QNPSSRSIPSLKSSQSFSFPSKVSTFNLFSK-----PHFPIHAN 458
>TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcription factor
{Mesembryanthemum crystallinum}, partial (49%)
Length = 1349
Score = 32.3 bits (72), Expect = 0.91
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -1
Query: 30 LHNTTTTTN--YIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHS 87
+HN T YI + S + T SF L TSLF F FF L FS++ L H
Sbjct: 1253 IHNFDQTNKNFYIHKVTSHNPT--SFTIL*TSLFHFSFF-----QFLFFSRIFVSLMNHH 1095
Query: 88 FSFDHPFSTFNLLSK 102
F+ FS+F+L+ K
Sbjct: 1094 FA---TFSSFSLVPK 1059
>TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protein
{Plasmodium falciparum 3D7}, partial (1%)
Length = 1193
Score = 31.6 bits (70), Expect = 1.5
Identities = 37/161 (22%), Positives = 61/161 (36%), Gaps = 10/161 (6%)
Frame = +1
Query: 810 CSFNSEDSSKSLDRKFYGDEMGENDVGNG---------PFSAENKPFHLQKNVRGKLQRN 860
CS N+EDS S +++ E+ V P SA KP + K V
Sbjct: 445 CSLNTEDSVPSPSDGI--EDVNESTVVPNSVNVSAVVVPNSATPKPISIVKEV------- 597
Query: 861 IEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSKIPKRKDRTSACYDTVCETPMT 920
G+ + I K P + +KS+KDH++ + KRKD S +
Sbjct: 598 ---GYPDSSISNQKRNEPG--------RSLKSRKDHVAAVTKRKDIPSNFSSALQSVQPG 744
Query: 921 RNTRSMTRNTVCETPMTRS-TRSSPQSIGSDDHNYMADGNQ 960
N V P T + ++ ++ +N++ + NQ
Sbjct: 745 LVPNISKENPVAAVPKTENPAKNLISAVSRQSNNFIVNTNQ 867
>TC88509 similar to PIR|T01826|T01826 microfibril-associated protein homolog
T15F16.8 - Arabidopsis thaliana, partial (83%)
Length = 1306
Score = 31.2 bits (69), Expect = 2.0
Identities = 24/67 (35%), Positives = 32/67 (46%), Gaps = 11/67 (16%)
Frame = -1
Query: 30 LHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKF-FFSSLPP----------HLSFSK 78
LH + I+ +L +S SFPPLS S + F S++PP LS SK
Sbjct: 1021 LHKSPFLALRIEKVLDSSFPTLSFPPLSCSSPSQPLPFLSTVPPGPPYPA*SYQSLSLSK 842
Query: 79 LHPFLPK 85
LH LP+
Sbjct: 841 LHIPLPR 821
>TC77622 similar to SP|Q43292|RL37_ARATH 60S ribosomal protein L37.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (98%)
Length = 630
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = -3
Query: 57 STSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFD 91
STS + F++ FS P H S+ LH L KH S D
Sbjct: 259 STSSYQFQWSFS**PSHSSYISLHVQLDKHMLSSD 155
>TC85746 similar to GP|16226201|gb|AAL16101.1 AT3g63140/T20O10_240
{Arabidopsis thaliana}, partial (80%)
Length = 1347
Score = 30.8 bits (68), Expect = 2.6
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 23 LDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLH 80
L+ L+L+L + ++ L+ LF PP T L+ FF P HLS + L+
Sbjct: 30 LELLVLILFSNNGHACFLFTYLALHFNLFQSPPTFTFLYFAPFFLFFTPIHLSLNLLY 203
>TC84556 similar to GP|7682783|gb|AAF67364.1| Hypothetical protein T32B20.g
{Arabidopsis thaliana}, partial (4%)
Length = 639
Score = 30.4 bits (67), Expect = 3.4
Identities = 25/81 (30%), Positives = 36/81 (43%), Gaps = 5/81 (6%)
Frame = -3
Query: 51 FSFPPLSTSLFAFKFFFSSLPPH----LSFSKLHPFLPKHSFSFDHPFST-FNLLSKTLS 105
FSF P STSLF+ F + PP SF + SFS + S+ F L+ S
Sbjct: 250 FSFAPSSTSLFSISSLFLTKPPKTAEGTSFCAISISSSSESFSSGNSISSWFALVFIPPS 71
Query: 106 TFPNFPLTYNPKAANLIDSLT 126
+ P NP + + +L+
Sbjct: 70 DCDSTPALTNPTFLSFVTALS 8
>TC85214 similar to PIR|S26688|S26688 legumin K - garden pea, partial (94%)
Length = 1831
Score = 30.4 bits (67), Expect = 3.4
Identities = 25/80 (31%), Positives = 40/80 (49%), Gaps = 7/80 (8%)
Frame = -3
Query: 29 LLHNTTTTTNYIKNILSTSK---TLFSFPPLSTS----LFAFKFFFSSLPPHLSFSKLHP 81
+LH + T ++ + ILST + F FPP +T+ +F+ FF + +S+ L
Sbjct: 1205 VLHKSCTADSFFQTILSTCSLFLSAFFFPPWTTTTVGIIFSLSFFLTM--SGMSWVSLSF 1032
Query: 82 FLPKHSFSFDHPFSTFNLLS 101
FL S+ PFS F +S
Sbjct: 1031 FLAMSGMSW-IPFSFFLTMS 975
>TC79860 homologue to PIR|T06533|T06533 probable gibberellin 20-oxidase -
garden pea, partial (93%)
Length = 1454
Score = 30.4 bits (67), Expect = 3.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 376 RVLELLATEFGCQGRRKSVPVWEMLLSYLYK 406
RV + L E+G Q RK +P+W L+++L++
Sbjct: 787 RVFKCLLMEYGTQLFRKKMPLWSTLVTHLWR 879
>BE325336
Length = 578
Score = 30.4 bits (67), Expect = 3.4
Identities = 22/65 (33%), Positives = 29/65 (43%)
Frame = +2
Query: 28 LLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHS 87
L LH++ I N L+ S +L PP +T F F P + + LH FL S
Sbjct: 53 LFLHHSNVKHMRISNFLNRSHSLLRMPPTNTCPSIFTFS*PHPPHYYYYIHLH-FL---S 220
Query: 88 FSFDH 92
F F H
Sbjct: 221 FHFSH 235
>BE317500
Length = 393
Score = 30.0 bits (66), Expect = 4.5
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 20 LIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFP 54
L+ L PLLLL H T+T+ + +LSTS+ + FP
Sbjct: 302 LLQL*PLLLLEH-TSTSGYFSSTVLSTSELILDFP 201
>TC90341 similar to GP|21703099|gb|AAM74492.1 At1g76120/T23E18_5 {Arabidopsis
thaliana}, partial (38%)
Length = 1103
Score = 30.0 bits (66), Expect = 4.5
Identities = 32/104 (30%), Positives = 46/104 (43%), Gaps = 1/104 (0%)
Frame = -3
Query: 14 TNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPH 73
++R++ L P + +++ TT + S+++TL P LS FK S L
Sbjct: 1005 SSRMLKLFSDPPFMGATSSSSETT--VLEFTSSTETL---PSLSLMDSLFK*LSSPLLKE 841
Query: 74 LSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLS-TFPNFPLTYNP 116
S S + P SF FD PFST S L P P T+ P
Sbjct: 840 TSTSFVTPESTT-SFLFDEPFSTSTASSSRLRLLLPTTPSTFRP 712
>TC80480 similar to GP|4056493|gb|AAC98059.1| chloroplast lumen common
protein family {Arabidopsis thaliana}, partial (39%)
Length = 1295
Score = 30.0 bits (66), Expect = 4.5
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = +1
Query: 46 TSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLS 105
T+ LF + P S S+ SSL P LSF + +P LPK + +P T LL +TLS
Sbjct: 49 TTVHLFPYHPPSPSV-PIHHHNSSLHPPLSFHQSNPHLPKTTLPSKNPKIT--LLHQTLS 219
>TC79863
Length = 786
Score = 30.0 bits (66), Expect = 4.5
Identities = 19/52 (36%), Positives = 26/52 (49%)
Frame = +1
Query: 19 LLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSL 70
+L+ L L+ LLH + T IK ST F + + FA+ FFSSL
Sbjct: 352 MLLSLLQLIQLLHRKSKTCKMIKRKCSTRFQCSHFDHVIITHFAWLLFFSSL 507
>TC89266 weakly similar to GP|18700101|gb|AAL77662.1 AT5g65760/MPA24_11
{Arabidopsis thaliana}, partial (35%)
Length = 1261
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 74 LSFSKLHPFLPKHSFSFDHPFSTFNLL 100
L F L PFL +SF D+PFS F LL
Sbjct: 8 LLFLSLSPFLSIYSFIIDNPFSIFFLL 88
>BG582607
Length = 754
Score = 29.6 bits (65), Expect = 5.9
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 22 DLDPLLL-LLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFS 77
D +P L LL N TT S T+F PP + L F FFF L P L S
Sbjct: 220 DSEPFFLFLLINDKETTAIKPTTARASPTIFPPPPPPSLLLRFLFFFLWLVPILILS 50
>TC87776 similar to GP|8671847|gb|AAF78410.1| ESTs gb|AI993141 gb|T44787 and
gb|T44786 come from this gene. {Arabidopsis thaliana},
partial (62%)
Length = 2354
Score = 29.6 bits (65), Expect = 5.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 384 EFGCQGRRKSVPVWEMLLSY 403
+FGC RR S P WE+LL +
Sbjct: 991 KFGCNMRRVSAPTWELLLLF 1050
>TC77715 homologue to GP|15485610|emb|CAC67407. Clp protease 2 proteolytic
subunit {Lycopersicon esculentum}, partial (76%)
Length = 1149
Score = 29.3 bits (64), Expect = 7.7
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +2
Query: 66 FFSSLPPHLSFSKLHPFLPKHSFSFDHPFST 96
FFSS P LS+++L P H F F FS+
Sbjct: 80 FFSSHPLFLSYTQLSSSFPHHWFFFSQSFSS 172
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,170,544
Number of Sequences: 36976
Number of extensions: 510745
Number of successful extensions: 3170
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 3103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3165
length of query: 972
length of database: 9,014,727
effective HSP length: 105
effective length of query: 867
effective length of database: 5,132,247
effective search space: 4449658149
effective search space used: 4449658149
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC121241.8