Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.8 - phase: 0 
         (972 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC92148                                                               437  e-122
AW689887 homologue to GP|10140744|gb| hypothetical protein {Oryz...   421  e-118
TC87743 similar to GP|15810581|gb|AAL07178.1 putative 2-oxogluta...    34  0.24
TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcr...    32  0.91
TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protei...    32  1.5
TC88509 similar to PIR|T01826|T01826 microfibril-associated prot...    31  2.0
TC77622 similar to SP|Q43292|RL37_ARATH 60S ribosomal protein L3...    31  2.6
TC85746 similar to GP|16226201|gb|AAL16101.1 AT3g63140/T20O10_24...    31  2.6
TC84556 similar to GP|7682783|gb|AAF67364.1| Hypothetical protei...    30  3.4
TC85214 similar to PIR|S26688|S26688 legumin K - garden pea, par...    30  3.4
TC79860 homologue to PIR|T06533|T06533 probable gibberellin 20-o...    30  3.4
BE325336                                                               30  3.4
BE317500                                                               30  4.5
TC90341 similar to GP|21703099|gb|AAM74492.1 At1g76120/T23E18_5 ...    30  4.5
TC80480 similar to GP|4056493|gb|AAC98059.1| chloroplast lumen c...    30  4.5
TC79863                                                                30  4.5
TC89266 weakly similar to GP|18700101|gb|AAL77662.1 AT5g65760/MP...    30  4.5
BG582607                                                               30  5.9
TC87776 similar to GP|8671847|gb|AAF78410.1| ESTs gb|AI993141  g...    30  5.9
TC77715 homologue to GP|15485610|emb|CAC67407. Clp protease 2 pr...    29  7.7

>TC92148 
          Length = 644

 Score =  437 bits (1123), Expect = e-122
 Identities = 212/214 (99%), Positives = 212/214 (99%)
 Frame = +2

Query: 720 QILFRLEILQSEVGRGIEDSSKQKFVKQICLLLENIQCHMEGGFFGDWNLENYVAKIIKS 779
           QILF LEILQSEVGRGIEDSSKQKFVKQICLLLENIQCHMEGGFFGDWNLENYVAKIIKS
Sbjct: 2   QILFPLEILQSEVGRGIEDSSKQKFVKQICLLLENIQCHMEGGFFGDWNLENYVAKIIKS 181

Query: 780 RYSHTLEDIVHKIYNKMDLLLFVNEDEAPDCSFNSEDSSKSLDRKFYGDEMGENDVGNGP 839
           RYSHTLEDIVHKIYNKMDLLLFVNEDEAPDCSFNSEDSSKSLDRKFYGDEMGENDVGNGP
Sbjct: 182 RYSHTLEDIVHKIYNKMDLLLFVNEDEAPDCSFNSEDSSKSLDRKFYGDEMGENDVGNGP 361

Query: 840 FSAENKPFHLQKNVRGKLQRNIEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSK 899
           FSAENKPFHLQKNVRGKLQRNIEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSK
Sbjct: 362 FSAENKPFHLQKNVRGKLQRNIEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSK 541

Query: 900 IPKRKDRTSACYDTVCETPMTRNTRSMTRNTVCE 933
           IPKRKDRTSACYDT CETPMTRNTRSMTRNTVCE
Sbjct: 542 IPKRKDRTSACYDTACETPMTRNTRSMTRNTVCE 643


>AW689887 homologue to GP|10140744|gb| hypothetical protein {Oryza sativa},
           partial (3%)
          Length = 672

 Score =  421 bits (1082), Expect = e-118
 Identities = 206/212 (97%), Positives = 206/212 (97%)
 Frame = +3

Query: 1   MSSNSDPMIRYSHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSL 60
           MSSNSDPMIRYSHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSL
Sbjct: 36  MSSNSDPMIRYSHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSL 215

Query: 61  FAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAAN 120
           FAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAAN
Sbjct: 216 FAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYNPKAAN 395

Query: 121 LIDSLTQLLHDYPWEPNSDADTDTTTPLVSPNLILLFTPFFNSFNSLAGFFDSDEDSLRI 180
           LIDSLTQLLHDYPWEPNSDADTDTTTPLVS NLILLFTPFFNSFNSLAGFFDSDEDSLRI
Sbjct: 396 LIDSLTQLLHDYPWEPNSDADTDTTTPLVSXNLILLFTPFFNSFNSLAGFFDSDEDSLRI 575

Query: 181 ENSFCDRFLGFFGNVSRRFRSKGVHCSWIGVN 212
           ENSFCD FL FFGNVS RF SKGVH SWIGVN
Sbjct: 576 ENSFCDXFLXFFGNVSXRFXSKGVHXSWIGVN 671


>TC87743 similar to GP|15810581|gb|AAL07178.1 putative 2-oxoglutarate/malate
           translocator protein {Arabidopsis thaliana}, partial
           (50%)
          Length = 1359

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 29/104 (27%), Positives = 45/104 (42%)
 Frame = +3

Query: 12  SHTNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLP 71
           SH N    ++ ++   L   +TT++  +  + L   ++         S   F+  FS LP
Sbjct: 189 SHFNCCCSVVPMESFALHSLSTTSSPTFFLHHLHHHRS---------SRPIFRSQFSPLP 341

Query: 72  PHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLSTFPNFPLTYN 115
            + S   +       SFSF    STFNL SK     P+FP+  N
Sbjct: 342 QNPSSRSIPSLKSSQSFSFPSKVSTFNLFSK-----PHFPIHAN 458


>TC86332 similar to GP|7528276|gb|AAF63205.1| AP2-related transcription factor
            {Mesembryanthemum crystallinum}, partial (49%)
          Length = 1349

 Score = 32.3 bits (72), Expect = 0.91
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -1

Query: 30   LHNTTTTTN--YIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHS 87
            +HN   T    YI  + S + T  SF  L TSLF F FF       L FS++   L  H 
Sbjct: 1253 IHNFDQTNKNFYIHKVTSHNPT--SFTIL*TSLFHFSFF-----QFLFFSRIFVSLMNHH 1095

Query: 88   FSFDHPFSTFNLLSK 102
            F+    FS+F+L+ K
Sbjct: 1094 FA---TFSSFSLVPK 1059


>TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protein
           {Plasmodium falciparum 3D7}, partial (1%)
          Length = 1193

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 37/161 (22%), Positives = 61/161 (36%), Gaps = 10/161 (6%)
 Frame = +1

Query: 810 CSFNSEDSSKSLDRKFYGDEMGENDVGNG---------PFSAENKPFHLQKNVRGKLQRN 860
           CS N+EDS  S       +++ E+ V            P SA  KP  + K V       
Sbjct: 445 CSLNTEDSVPSPSDGI--EDVNESTVVPNSVNVSAVVVPNSATPKPISIVKEV------- 597

Query: 861 IEGGHNKTLIEALKIRMPALRVWAPKQKGMKSKKDHLSKIPKRKDRTSACYDTVCETPMT 920
              G+  + I   K   P         + +KS+KDH++ + KRKD  S     +      
Sbjct: 598 ---GYPDSSISNQKRNEPG--------RSLKSRKDHVAAVTKRKDIPSNFSSALQSVQPG 744

Query: 921 RNTRSMTRNTVCETPMTRS-TRSSPQSIGSDDHNYMADGNQ 960
                   N V   P T +  ++   ++    +N++ + NQ
Sbjct: 745 LVPNISKENPVAAVPKTENPAKNLISAVSRQSNNFIVNTNQ 867


>TC88509 similar to PIR|T01826|T01826 microfibril-associated protein homolog
            T15F16.8 - Arabidopsis thaliana, partial (83%)
          Length = 1306

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 24/67 (35%), Positives = 32/67 (46%), Gaps = 11/67 (16%)
 Frame = -1

Query: 30   LHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKF-FFSSLPP----------HLSFSK 78
            LH +      I+ +L +S    SFPPLS S  +    F S++PP           LS SK
Sbjct: 1021 LHKSPFLALRIEKVLDSSFPTLSFPPLSCSSPSQPLPFLSTVPPGPPYPA*SYQSLSLSK 842

Query: 79   LHPFLPK 85
            LH  LP+
Sbjct: 841  LHIPLPR 821


>TC77622 similar to SP|Q43292|RL37_ARATH 60S ribosomal protein L37.
           [Mouse-ear cress] {Arabidopsis thaliana}, partial (98%)
          Length = 630

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 16/35 (45%), Positives = 20/35 (56%)
 Frame = -3

Query: 57  STSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFD 91
           STS + F++ FS  P H S+  LH  L KH  S D
Sbjct: 259 STSSYQFQWSFS**PSHSSYISLHVQLDKHMLSSD 155


>TC85746 similar to GP|16226201|gb|AAL16101.1 AT3g63140/T20O10_240
          {Arabidopsis thaliana}, partial (80%)
          Length = 1347

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 23 LDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLH 80
          L+ L+L+L +      ++   L+    LF  PP  T L+   FF    P HLS + L+
Sbjct: 30 LELLVLILFSNNGHACFLFTYLALHFNLFQSPPTFTFLYFAPFFLFFTPIHLSLNLLY 203


>TC84556 similar to GP|7682783|gb|AAF67364.1| Hypothetical protein T32B20.g
           {Arabidopsis thaliana}, partial (4%)
          Length = 639

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 25/81 (30%), Positives = 36/81 (43%), Gaps = 5/81 (6%)
 Frame = -3

Query: 51  FSFPPLSTSLFAFKFFFSSLPPH----LSFSKLHPFLPKHSFSFDHPFST-FNLLSKTLS 105
           FSF P STSLF+    F + PP      SF  +       SFS  +  S+ F L+    S
Sbjct: 250 FSFAPSSTSLFSISSLFLTKPPKTAEGTSFCAISISSSSESFSSGNSISSWFALVFIPPS 71

Query: 106 TFPNFPLTYNPKAANLIDSLT 126
              + P   NP   + + +L+
Sbjct: 70  DCDSTPALTNPTFLSFVTALS 8


>TC85214 similar to PIR|S26688|S26688 legumin K - garden pea, partial (94%)
          Length = 1831

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 25/80 (31%), Positives = 40/80 (49%), Gaps = 7/80 (8%)
 Frame = -3

Query: 29   LLHNTTTTTNYIKNILSTSK---TLFSFPPLSTS----LFAFKFFFSSLPPHLSFSKLHP 81
            +LH + T  ++ + ILST     + F FPP +T+    +F+  FF +     +S+  L  
Sbjct: 1205 VLHKSCTADSFFQTILSTCSLFLSAFFFPPWTTTTVGIIFSLSFFLTM--SGMSWVSLSF 1032

Query: 82   FLPKHSFSFDHPFSTFNLLS 101
            FL     S+  PFS F  +S
Sbjct: 1031 FLAMSGMSW-IPFSFFLTMS 975


>TC79860 homologue to PIR|T06533|T06533 probable gibberellin 20-oxidase -
           garden pea, partial (93%)
          Length = 1454

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 376 RVLELLATEFGCQGRRKSVPVWEMLLSYLYK 406
           RV + L  E+G Q  RK +P+W  L+++L++
Sbjct: 787 RVFKCLLMEYGTQLFRKKMPLWSTLVTHLWR 879


>BE325336 
          Length = 578

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 22/65 (33%), Positives = 29/65 (43%)
 Frame = +2

Query: 28  LLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHS 87
           L LH++      I N L+ S +L   PP +T    F F     P +  +  LH FL   S
Sbjct: 53  LFLHHSNVKHMRISNFLNRSHSLLRMPPTNTCPSIFTFS*PHPPHYYYYIHLH-FL---S 220

Query: 88  FSFDH 92
           F F H
Sbjct: 221 FHFSH 235


>BE317500 
          Length = 393

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 20  LIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFP 54
           L+ L PLLLL H T+T+  +   +LSTS+ +  FP
Sbjct: 302 LLQL*PLLLLEH-TSTSGYFSSTVLSTSELILDFP 201


>TC90341 similar to GP|21703099|gb|AAM74492.1 At1g76120/T23E18_5 {Arabidopsis
            thaliana}, partial (38%)
          Length = 1103

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 32/104 (30%), Positives = 46/104 (43%), Gaps = 1/104 (0%)
 Frame = -3

Query: 14   TNRIVLLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPH 73
            ++R++ L    P +    +++ TT  +    S+++TL   P LS     FK   S L   
Sbjct: 1005 SSRMLKLFSDPPFMGATSSSSETT--VLEFTSSTETL---PSLSLMDSLFK*LSSPLLKE 841

Query: 74   LSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLS-TFPNFPLTYNP 116
             S S + P     SF FD PFST    S  L    P  P T+ P
Sbjct: 840  TSTSFVTPESTT-SFLFDEPFSTSTASSSRLRLLLPTTPSTFRP 712


>TC80480 similar to GP|4056493|gb|AAC98059.1| chloroplast lumen common
           protein family {Arabidopsis thaliana}, partial (39%)
          Length = 1295

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 24/60 (40%), Positives = 32/60 (53%)
 Frame = +1

Query: 46  TSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFSKLHPFLPKHSFSFDHPFSTFNLLSKTLS 105
           T+  LF + P S S+       SSL P LSF + +P LPK +    +P  T  LL +TLS
Sbjct: 49  TTVHLFPYHPPSPSV-PIHHHNSSLHPPLSFHQSNPHLPKTTLPSKNPKIT--LLHQTLS 219


>TC79863 
          Length = 786

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/52 (36%), Positives = 26/52 (49%)
 Frame = +1

Query: 19  LLIDLDPLLLLLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSL 70
           +L+ L  L+ LLH  + T   IK   ST      F  +  + FA+  FFSSL
Sbjct: 352 MLLSLLQLIQLLHRKSKTCKMIKRKCSTRFQCSHFDHVIITHFAWLLFFSSL 507


>TC89266 weakly similar to GP|18700101|gb|AAL77662.1 AT5g65760/MPA24_11
           {Arabidopsis thaliana}, partial (35%)
          Length = 1261

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 74  LSFSKLHPFLPKHSFSFDHPFSTFNLL 100
           L F  L PFL  +SF  D+PFS F LL
Sbjct: 8   LLFLSLSPFLSIYSFIIDNPFSIFFLL 88


>BG582607 
          Length = 754

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 22  DLDPLLL-LLHNTTTTTNYIKNILSTSKTLFSFPPLSTSLFAFKFFFSSLPPHLSFS 77
           D +P  L LL N   TT         S T+F  PP  + L  F FFF  L P L  S
Sbjct: 220 DSEPFFLFLLINDKETTAIKPTTARASPTIFPPPPPPSLLLRFLFFFLWLVPILILS 50


>TC87776 similar to GP|8671847|gb|AAF78410.1| ESTs gb|AI993141  gb|T44787 and
            gb|T44786 come from this gene. {Arabidopsis thaliana},
            partial (62%)
          Length = 2354

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 384  EFGCQGRRKSVPVWEMLLSY 403
            +FGC  RR S P WE+LL +
Sbjct: 991  KFGCNMRRVSAPTWELLLLF 1050


>TC77715 homologue to GP|15485610|emb|CAC67407. Clp protease 2 proteolytic
           subunit {Lycopersicon esculentum}, partial (76%)
          Length = 1149

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = +2

Query: 66  FFSSLPPHLSFSKLHPFLPKHSFSFDHPFST 96
           FFSS P  LS+++L    P H F F   FS+
Sbjct: 80  FFSSHPLFLSYTQLSSSFPHHWFFFSQSFSS 172


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,170,544
Number of Sequences: 36976
Number of extensions: 510745
Number of successful extensions: 3170
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 3103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3165
length of query: 972
length of database: 9,014,727
effective HSP length: 105
effective length of query: 867
effective length of database: 5,132,247
effective search space: 4449658149
effective search space used: 4449658149
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)


Medicago: description of AC121241.8