TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.7 + phase: 0 /pseudo
         (69 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW689142 similar to GP|20260314|gb unknown protein {Arabidopsis ...    50  2e-07
TC90733 similar to PIR|C96712|C96712 hypothetical protein F14K14...    26  2.6
TC85635 homologue to GP|4959710|gb|AAD34458.1| Skp1 {Medicago sa...    25  4.4
TC85316 weakly similar to PIR|E84707|E84707 probable protein kin...    24  9.8

>AW689142 similar to GP|20260314|gb unknown protein {Arabidopsis thaliana},
           partial (28%)
          Length = 580

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 25/53 (47%), Positives = 35/53 (65%), Gaps = 1/53 (1%)
 Frame = +1

Query: 6   SERDFKGEASSDKSKSTLERTKEETGWPSFRQVV-DLLKLSLEEFTSSILKFM 57
           S ++FKG  S+DK     E +KE+ GWPSF Q++ DL KLSLE   ++  +FM
Sbjct: 376 SXQEFKGRESNDKRMPIPESSKEDPGWPSFGQLIADLSKLSLEAXANAFTQFM 534


>TC90733 similar to PIR|C96712|C96712 hypothetical protein F14K14.14
           [imported] - Arabidopsis thaliana, partial (18%)
          Length = 745

 Score = 26.2 bits (56), Expect = 2.6
 Identities = 14/54 (25%), Positives = 26/54 (47%)
 Frame = +1

Query: 11  KGEASSDKSKSTLERTKEETGWPSFRQVVDLLKLSLEEFTSSILKFMSKPHTTE 64
           KG      S+      KE   WP F+  +DL+++ L +  ++I K+  +   +E
Sbjct: 157 KGACEKGHSEELKAMYKE---WPFFQSTIDLIEMVLGKADTTIAKYYDEALVSE 309


>TC85635 homologue to GP|4959710|gb|AAD34458.1| Skp1 {Medicago sativa},
          complete
          Length = 914

 Score = 25.4 bits (54), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 37 QVVDLLKLSLEEFTSSILKFMSKP 60
          Q   L K+ + +FT+++ KF SKP
Sbjct: 42 QFSSLTKIRVSDFTNTVSKFSSKP 113


>TC85316 weakly similar to PIR|E84707|E84707 probable protein kinase
           [imported] - Arabidopsis thaliana, partial (66%)
          Length = 1528

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 11/24 (45%), Positives = 14/24 (57%)
 Frame = +2

Query: 15  SSDKSKSTLERTKEETGWPSFRQV 38
           SS  SKS+L R K  + W S + V
Sbjct: 446 SSISSKSSLRRAKSTSSWSSLKLV 517


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.306    0.122    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,645,256
Number of Sequences: 36976
Number of extensions: 13531
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 69
length of database: 9,014,727
effective HSP length: 45
effective length of query: 24
effective length of database: 7,350,807
effective search space: 176419368
effective search space used: 176419368
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)