TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.11 + phase: 0 /pseudo
         (175 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644741                                                               46  9e-06
BG580885                                                               43  6e-05
AL366605                                                               38  0.002
BE999414                                                               35  0.020
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...    27  3.2
BG585614 similar to GP|22295990|dbj ORF_ID:tlr2263~hypothetical ...    27  3.2
TC92337 homologue to GP|8572250|gb|AAF77064.1| beta 1 2-xylosylt...    27  4.1
BF646615 homologue to PIR|T48395|T483 GT2-like protein - Arabido...    27  5.4
BG644364 similar to PIR|E86221|E86 hypothetical protein [importe...    27  5.4
TC82507                                                                26  7.1
BF519551                                                               26  9.2
TC83499                                                                26  9.2

>BG644741 
          Length = 735

 Score = 45.8 bits (107), Expect = 9e-06
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = -2

Query: 78  LHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSK 120
           L +FP SL   A  WF  L   SI +W+Q+R  FL++++P SK
Sbjct: 587 LRVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYPVSK 459


>BG580885 
          Length = 609

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 26/102 (25%), Positives = 51/102 (49%), Gaps = 6/102 (5%)
 Frame = +3

Query: 47  FFGSPTEDPNLHVSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLKIGSI---IS 103
           F G+P E P  H+S F ++     A+   ++  +FP +L + ++ W+  L I      +S
Sbjct: 54  FRGTPNESPITHLSRFNKVCRANNASSVEMQKKIFPVTLEEESALWY-DLNIEPYYISLS 230

Query: 104 WDQMRKAFLSQFFPHSKTAQLR---IKSHSSLKKMVNLFTMR 142
           WD+++ +FL  ++      +LR   +  H   K+ V  + +R
Sbjct: 231 WDEIKLSFLQAYYEIEPVEELRSELMGIHQGEKERVRSYFLR 356


>AL366605 
          Length = 422

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = -3

Query: 55  PNLHVSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQ 114
           P  H+  ++R  G  K N +++ +H F  SL + A+ W+ SL    I ++D++  AF S 
Sbjct: 291 PQNHIIKYVRKMGNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSH 115

Query: 115 F 115
           +
Sbjct: 114 Y 112


>BE999414 
          Length = 613

 Score = 34.7 bits (78), Expect = 0.020
 Identities = 24/89 (26%), Positives = 44/89 (48%)
 Frame = +3

Query: 52  TEDPNLHVSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAF 111
           T DP+ H+   + +  T ++ + AV+  LF  +LR  A  WF +L+  SI SW  +   F
Sbjct: 27  T*DPDEHMEN-IEVVLTYRSVRGAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGDLCHEF 203

Query: 112 LSQFFPHSKTAQLRIKSHSSLKKMVNLFT 140
            + F       ++ + S  ++  ++N  T
Sbjct: 204 TTHFTVSRTQPKMDLFS*LNMSLILNFVT 290


>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
           arietinum}, partial (8%)
          Length = 516

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 13/48 (27%), Positives = 24/48 (49%), Gaps = 5/48 (10%)
 Frame = +2

Query: 85  LRDRASAWFHSL-----KIGSIISWDQMRKAFLSQFFPHSKTAQLRIK 127
           L + A  W+ SL     +  ++++W   RK FL ++FP     +  I+
Sbjct: 254 LAEEADDWWISLLPVLEQDDAVVTWAMFRKEFLGRYFPEDVRGKKEIE 397


>BG585614 similar to GP|22295990|dbj ORF_ID:tlr2263~hypothetical protein
          {Thermosynechococcus elongatus BP-1}, partial (5%)
          Length = 617

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 12 IISSDEPYDAILYPTVEGNNFEIKSALIYLVQE 44
          ++SS EP D +    V  NNF +K   IYL+ +
Sbjct: 31 LVSSIEPGDKMEVVVVFENNFIVKKTAIYLIYD 129


>TC92337 homologue to GP|8572250|gb|AAF77064.1| beta 1 2-xylosyltransferase
           {Arabidopsis thaliana}, partial (4%)
          Length = 448

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 32  FEIKSALIYLVQENQFFGSPTEDPNLHVSIFLRLSGTLKANQEAVRLHLF-PFSLRDRAS 90
           F   S  +Y +    F  +PT  PN H+ IF + S   +   E  + H+  P+ +    S
Sbjct: 91  FNSFSLCLYFIHHPSFL-NPTPSPNSHIKIFTKDSPFRRPFIEKHKTHILKPWPILPSYS 267

Query: 91  AW 92
            W
Sbjct: 268 PW 273


>BF646615 homologue to PIR|T48395|T483 GT2-like protein - Arabidopsis
           thaliana, partial (16%)
          Length = 654

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 15/37 (40%), Positives = 22/37 (58%)
 Frame = -1

Query: 108 RKAFLSQFFPHSKTAQLRIKSHSSLKKMVNLFTMRGS 144
           ++ FLS FF      +LRIK+ S+LKK  +L +   S
Sbjct: 435 KRTFLSSFF------ELRIKTRSNLKKCKSLLSRPSS 343


>BG644364 similar to PIR|E86221|E86 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (55%)
          Length = 638

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -3

Query: 79  HLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPHSKTAQLRIKSHSSLKKMVNL 138
           H+ P S    +  W+H++     +SW   RK        H    Q+ + + S+ K  +++
Sbjct: 633 HVHPLSSNRLSRLWWHAIIEWQTLSWASNRKRSSRNCCKH-LILQVLLGTMSTKKSNMSV 457

Query: 139 FTMRGSVSKKC 149
             M  ++S  C
Sbjct: 456 LVMAAAISFFC 424


>TC82507 
          Length = 985

 Score = 26.2 bits (56), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 155 IMVLRIGLVSTLFIMVFCFP 174
           + ++R+G  S  F+ +FCFP
Sbjct: 558 MQIIRVGCSSFFFLFLFCFP 499


>BF519551 
          Length = 476

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 12  IISSDEPYDAILYPTVEGNNFEIKSALIYLVQE 44
           ++SS EP + +    V  N+F +K  +IYL+ +
Sbjct: 305 LVSSIEPGNQVEVVVVVENDFIVKKTIIYLIYD 403


>TC83499 
          Length = 623

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 18/64 (28%), Positives = 32/64 (49%)
 Frame = +2

Query: 55  PNLHVSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQ 114
           PN+  SI + L    +A  + +++  FP +L  R     + L +  +I + Q +K  L Q
Sbjct: 149 PNICCSILIPLRRQREAGLKRLKVLKFPLALSLRIRGSQNLLLMMVLILF*QDQKHILPQ 328

Query: 115 FFPH 118
            FP+
Sbjct: 329 IFPN 340


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.326    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,606,037
Number of Sequences: 36976
Number of extensions: 75112
Number of successful extensions: 471
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of query: 175
length of database: 9,014,727
effective HSP length: 90
effective length of query: 85
effective length of database: 5,686,887
effective search space: 483385395
effective search space used: 483385395
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)