TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119417.1 + phase: 0 /pseudo
         (1553 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644690 weakly similar to GP|18542179|gb putative pol protein {...    48  7e-09
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ...    42  0.002
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported...    33  0.86

>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
            partial (22%)
          Length = 629

 Score = 48.1 bits (113), Expect(2) = 7e-09
 Identities = 36/98 (36%), Positives = 51/98 (51%), Gaps = 6/98 (6%)
 Frame = -1

Query: 1111 SRLQSTRRH*LH*NICSSCKIGS----NQVTSILRN*SWHNI--ISNGCQKCLS*WCH*R 1164
            +R+QS RR+ L *   + C+ GS    N    I      H +  + NGC++C+ *W   R
Sbjct: 395  ARIQSKRRNRL**GFFTCCQNGSY*NFNSFCCI------HGVQAVPNGCEECIY*WRSQR 234

Query: 1165 RSVC*TTSWV*GS*AS*PCL*T*EITIWLETSSQSLV* 1202
              VC  TSW+*    +  C+     TIW E SS+S+V*
Sbjct: 233  GGVCQATSWI*RCRGTKSCVQIE*DTIWSEASSKSMV* 120



 Score = 31.6 bits (70), Expect(2) = 7e-09
 Identities = 24/62 (38%), Positives = 32/62 (50%)
 Frame = -2

Query: 1043 *A*NC*RSSLR*WMDISYARRAKSIPKE*CVGSGTQTLSEEHYWNKMGIQKQAE*TMRSN 1102
            *A  C*RS     +D  YARR  S+ K+* +  G+ T  +   WN +G  KQA    R+ 
Sbjct: 589  *AQEC*RSIA*CRLDQFYARRTPSV*KK*GMVPGSST*RQNSNWN*VGF*KQA*VITRNK 410

Query: 1103 QK 1104
             K
Sbjct: 409  SK 404


>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (7%)
          Length = 763

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 1096 E*TMRSNQKQSQTCCSRLQSTRRH*LH*NICSSCKIGSNQVTSILRN*SWHNIISNGCQK 1155
            E*    +Q QS+  C RL+ T RH L  ++C+SC   ++  T  + +  W    S+ C+ 
Sbjct: 127  E*RWNVDQIQSKASCKRLRETTRHRLRRSVCTSCSNRNHMTTLGVSSN*WMLDPSHRCKN 306

Query: 1156 CLS*W--CH*RRSVC 1168
            C+  W  C  R S C
Sbjct: 307  CIPKWTLCGNRNSHC 351


>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
            Arabidopsis thaliana, partial (17%)
          Length = 618

 Score = 33.1 bits (74), Expect = 0.86
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -3

Query: 1103 QKQSQTCCSRLQSTRRH*LH*NICSSCKIGSNQVTSILRN*SWHNIISNGCQKCLS 1158
            ++++ T   R+ S     LH*+IC+S +   N     L    W  I++NGC++C+S
Sbjct: 382  EEEN*TSSKRVYSDIWRGLH*DICTSSQATHN*NCFKLGCEPWMGIVANGCEECIS 215


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.386    0.173    0.716 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,517,325
Number of Sequences: 36976
Number of extensions: 652283
Number of successful extensions: 11868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 10323
Number of HSP's gapped (non-prelim): 1966
length of query: 1553
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1444
effective length of database: 4,984,343
effective search space: 7197391292
effective search space used: 7197391292
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (21.5 bits)
S2: 65 (29.6 bits)