BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119412.2 - phase: 0
(184 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79948 similar to PIR|A84830|A84830 hypothetical protein At2g40... 34 0.029
TC88896 weakly similar to GP|6728968|gb|AAF26966.1| unknown prot... 33 0.084
TC87274 similar to PIR|S51232|S51232 gibberellin-responsive ovar... 32 0.11
BI308444 similar to GP|9294587|dbj contains similarity to unknow... 31 0.32
BF635065 weakly similar to GP|11037008|gb latent nuclear antigen... 30 0.41
TC80571 similar to GP|22136852|gb|AAM91770.1 unknown protein {Ar... 29 0.92
TC88380 similar to GP|4324495|gb|AAD16897.1| glutamyl-tRNA reduc... 29 1.2
TC79207 similar to GP|10086489|gb|AAG12549.1 Unknown Protein {Ar... 29 1.2
TC91514 28 1.6
TC76722 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum s... 28 1.6
AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis ... 28 2.1
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 28 2.1
TC91264 weakly similar to PIR|T27543|T27543 hypothetical protein... 28 2.7
TC88678 similar to PIR|S51171|S51171 amino acid transport protei... 28 2.7
TC90598 similar to GP|8953389|emb|CAB96662.1 putative protein {A... 27 3.5
AW126356 similar to GP|22758342|gb| hypothetical protein {Oryza ... 27 3.5
TC79051 similar to GP|10120444|gb|AAG13069.1 Unknown protein {Ar... 27 3.5
TC87818 similar to GP|20197082|gb|AAC26698.2 putative katanin {A... 27 6.0
TC93371 weakly similar to PIR|C85432|C85432 hypothetical protein... 27 6.0
TC82821 weakly similar to GP|17979408|gb|AAL49846.1 putative eth... 27 6.0
>TC79948 similar to PIR|A84830|A84830 hypothetical protein At2g40480
[imported] - Arabidopsis thaliana, partial (28%)
Length = 1128
Score = 34.3 bits (77), Expect = 0.029
Identities = 26/93 (27%), Positives = 45/93 (47%)
Frame = +3
Query: 37 GKQENNSNTFEEVGKIVEEGVDDTEEDIILEECSTMKMVEELEPLHPEEFPQERPYTEEA 96
G+ NN + F+ K VEE + E+D+I++E T+ ++EEL ++ +EA
Sbjct: 210 GEAFNNFDDFDI--KKVEEQAAELEKDLIVKELETLDVLEELGATKRIVEDLKQQLQKEA 383
Query: 97 ETVENEEVMEVTEKEDRILIKEESMEEKGKKVN 129
+ + E+ +IKE + E G VN
Sbjct: 384 LKLSATPDLNSNEQVGTPVIKEMNKETNGNNVN 482
>TC88896 weakly similar to GP|6728968|gb|AAF26966.1| unknown protein
{Arabidopsis thaliana}, partial (27%)
Length = 1097
Score = 32.7 bits (73), Expect = 0.084
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Frame = +2
Query: 2 INMQDTNQRLKNLSFQMEMMQEQIMDIQANIQSTHGKQENNSNTFEEVGKIV------EE 55
+ +++ NQ ++ S +E +Q+ + + H + S+ E++G +
Sbjct: 191 MKVEEANQLERSASLSLETATKQL---EGKNELLHDAESEISSLKEKLGMLEMTVGRQRG 361
Query: 56 GVDDTEEDIILEECSTMKMVEELEPLHPEEFPQERPYTEEAETVENEEVMEVTEKEDRIL 115
++D E ++ + ++M +++E L E ETV E+ + ++
Sbjct: 362 DLEDAERCLLAAKEENIEMSKKIESLE-----------SEIETVSKEKAQALNNEKLSAS 508
Query: 116 IKEESMEEKGKKVNKVEIDRIIDE 139
+ +EEK K +N++EI R +E
Sbjct: 509 SVQTLLEEKNKLINELEICRDEEE 580
>TC87274 similar to PIR|S51232|S51232 gibberellin-responsive ovarian protein
G14 - garden pea (fragment), partial (45%)
Length = 734
Score = 32.3 bits (72), Expect = 0.11
Identities = 24/81 (29%), Positives = 32/81 (38%)
Frame = +1
Query: 53 VEEGVDDTEEDIILEECSTMKMVEELEPLHPEEFPQERPYTEEAETVENEEVMEVTEKED 112
VE + +E + VEE P E E TEE VENEE E E
Sbjct: 85 VEVETQQAPTTVTEKETVEVTKVEETTPPASEVPASEPATTEEVVAVENEETEVPVEAES 264
Query: 113 RILIKEESMEEKGKKVNKVEI 133
+ +E E + + KVE+
Sbjct: 265 TQVTQEAKPEVENPEPEKVEV 327
>BI308444 similar to GP|9294587|dbj contains similarity to unknown
protein~dbj|BAA91404.1~gene_id:MIG5.4 {Arabidopsis
thaliana}, partial (1%)
Length = 762
Score = 30.8 bits (68), Expect = 0.32
Identities = 26/85 (30%), Positives = 42/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 28 IQANIQSTHGKQENNSNTFEEVGKIVEEGVDDTEEDIIL-EECSTMKMVEELEPLHPEEF 86
++ N++S+ NSN ++G V T+ED+IL + C K E L P +F
Sbjct: 11 VELNLESSR-----NSNLSTQMGIHVFNKKTSTKEDVILTDPCRKRKFDEYLNASSP-QF 172
Query: 87 PQERPYTEEAETVENEEVMEVTEKE 111
+ R E E+++N E E EK+
Sbjct: 173 VEVR--VSETESLQNLEHTETKEKK 241
>BF635065 weakly similar to GP|11037008|gb latent nuclear antigen {Human
herpesvirus 8}, partial (3%)
Length = 681
Score = 30.4 bits (67), Expect = 0.41
Identities = 19/56 (33%), Positives = 35/56 (61%), Gaps = 2/56 (3%)
Frame = +2
Query: 87 PQERPYTEEAETVEN-EEVMEVTEKEDRILIKEESMEEKGKKVNK-VEIDRIIDEI 140
PQE+ + ++ + VE+ EE E + E+ + +EE EEK +N+ V++D +DE+
Sbjct: 350 PQEQEHDDDDDDVEDDEETDEEDDNEEAAVEQEEQKEEKQVTMNELVQMDN-VDEV 514
>TC80571 similar to GP|22136852|gb|AAM91770.1 unknown protein {Arabidopsis
thaliana}, partial (35%)
Length = 1502
Score = 29.3 bits (64), Expect = 0.92
Identities = 26/105 (24%), Positives = 41/105 (38%), Gaps = 9/105 (8%)
Frame = +2
Query: 35 THGKQENNSNTFEEVGKIVEEGVDDTEEDIILEECSTMKMVEELEPLHPEEFPQERPYTE 94
+H K S TFE+ K E +DD + +EE E + ++FP +
Sbjct: 713 SHPKPARTSETFEKDEKETELVIDDDKPSNGVEENGKHSFELESKKRKKDKFPSKPSNDV 892
Query: 95 EAETVENEEVMEVTEKEDRILIK---------EESMEEKGKKVNK 130
+A E E K+D+ K E+ E K K+V +
Sbjct: 893 KANVKEASEPESKKRKKDKFPSKPSNDVKANVTETSEPKPKRVKR 1027
>TC88380 similar to GP|4324495|gb|AAD16897.1| glutamyl-tRNA reductase
precursor {Glycine max}, partial (92%)
Length = 1689
Score = 28.9 bits (63), Expect = 1.2
Identities = 23/132 (17%), Positives = 56/132 (42%)
Frame = +3
Query: 9 QRLKNLSFQMEMMQEQIMDIQANIQSTHGKQENNSNTFEEVGKIVEEGVDDTEEDIILEE 68
Q +K L E M + + + ++ N + +++ + VDD +E + +
Sbjct: 1143 QNVKELPLASEEMGGKRLFVDISVP------RNVGSCVDDLESVKVYNVDDLKEGVAANK 1304
Query: 69 CSTMKMVEELEPLHPEEFPQERPYTEEAETVENEEVMEVTEKEDRILIKEESMEEKGKKV 128
++ E + + EE Q + + ETV + + + R+ E+ + + G +
Sbjct: 1305 EDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRVAELEKCLGKMGDDI 1484
Query: 129 NKVEIDRIIDEI 140
NK + + +D++
Sbjct: 1485 NK-KTQKAVDDL 1517
>TC79207 similar to GP|10086489|gb|AAG12549.1 Unknown Protein {Arabidopsis
thaliana}, partial (20%)
Length = 1719
Score = 28.9 bits (63), Expect = 1.2
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Frame = +3
Query: 5 QDTNQRLKNLSFQMEMMQEQIMDIQANIQSTHGKQEN--------NSNTFEEVGKIVEEG 56
Q+ L +L ++E ++ ++ D + ++ K + S+T E K +E
Sbjct: 867 QEFETELNHLQSKIETLENELQDEKRAHEAALVKSKELEEQLLRIESSTAENDAKYTQER 1046
Query: 57 VDDTEEDIILEECSTMKMV-EELEPLHPEEFPQERPYTEEA-ETVENEEVMEVTEKE 111
D + E T+ ++ ++L LHP+ P E PY + T + + EV + E
Sbjct: 1047DLAAAADKLAECQETIFLLGKQLNALHPQSQPIESPYNNTSPNTTSSPNLQEVGQLE 1217
>TC91514
Length = 751
Score = 28.5 bits (62), Expect = 1.6
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Frame = +3
Query: 31 NIQSTHGKQENNSNTFEEVGKIVEEG---VDDTEEDIILEECST 71
++ HGK ENN N E+ + E + EE +LE+C++
Sbjct: 3 DVDCIHGKGENNGNKVEDTDEKTESSYVMLSKFEETNMLEQCNS 134
>TC76722 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum sativum},
partial (6%)
Length = 1353
Score = 28.5 bits (62), Expect = 1.6
Identities = 36/158 (22%), Positives = 67/158 (41%), Gaps = 7/158 (4%)
Frame = -3
Query: 14 LSFQMEMMQEQIMDIQANIQSTHGKQENNSNTFEEVGKIVEEGVDDTEEDIILEECSTMK 73
LSF ++ ++ +++T K E +N EEV + V++ + T +++ +
Sbjct: 718 LSFITRGKWGPLLLLKEKVETTIEKAEQVANIVEEVAERVDKMAERTAKNL---PKGKRR 548
Query: 74 MVEELEPLHPEEFPQERPYTEEA-ETVENEE------VMEVTEKEDRILIKEESMEEKGK 126
+V E E+ + E+A E VEN E + T+ ++++ ES K K
Sbjct: 547 VVAEFVENVAEDVEKIAQNAEDALEKVENMEKELESFMQSSTDHHEKLISPTES---KDK 377
Query: 127 KVNKVEIDRIIDEICALFNKPKLGRIWTPHQLYFKFME 164
K K + D + N K ++ Q+ F F E
Sbjct: 376 K*RKKPLSGPYDILVPRTNNTKFQHVF*DLQISFWFQE 263
>AW774261 weakly similar to EGAD|146423|156 vitellogenin {Anolis pulchellus},
partial (40%)
Length = 495
Score = 28.1 bits (61), Expect = 2.1
Identities = 20/52 (38%), Positives = 26/52 (49%)
Frame = +1
Query: 83 PEEFPQERPYTEEAETVENEEVMEVTEKEDRILIKEESMEEKGKKVNKVEID 134
PEE +E Y E E E EE+ E E+ + EE EE K+ +VE D
Sbjct: 313 PEEEMEEIEYEEVEEEEEVEEIEEEVEENEE--DAEEEEEE*EKEEEEVEED 462
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 28.1 bits (61), Expect = 2.1
Identities = 36/123 (29%), Positives = 45/123 (36%)
Frame = +3
Query: 47 EEVGKIVEEGVDDTEEDIILEECSTMKMVEELEPLHPEEFPQERPYTEEAETVENEEVME 106
EE + +EG + EED EE EE E EE + EE E E EE
Sbjct: 45 EEHNEEEDEGEVEEEEDEHDEEEEDEHDEEEEEEEEEEEEDEHDDEEEEEEEEEEEE--- 215
Query: 107 VTEKEDRILIKEESMEEKGKKVNKVEIDRIIDEICALFNKPKLGRIWTPHQLYFKFMEFL 166
EE +E+G+ + EIDRI P L + FL
Sbjct: 216 -----------EEDDDEEGE---EDEIDRIST---------------LPDPLLLHILSFL 308
Query: 167 PTR 169
PTR
Sbjct: 309 PTR 317
>TC91264 weakly similar to PIR|T27543|T27543 hypothetical protein ZC395.10 -
Caenorhabditis elegans, partial (24%)
Length = 767
Score = 27.7 bits (60), Expect = 2.7
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 49 VGKIVEEGVDDTEEDII-LEECSTMKMVEELEPLHPEEFPQERPYTEEAETVENEEVMEV 107
+G+ + +DD++E++ LE + + E +E +EE E E+ ++
Sbjct: 377 MGEGSDSALDDSDEEMPGLETVDDTTKINDSTKEESSEISEESK-SEEKEIKSEEKEIKS 553
Query: 108 TEKEDRILIKEESMEEKGKKVNKVEIDRIIDEICA 142
EKE + KE EEK +K NK+ + ICA
Sbjct: 554 EEKEIKSEEKEIKSEEK-EK*NKINVQ*KRVFICA 655
>TC88678 similar to PIR|S51171|S51171 amino acid transport protein AAT1 -
Arabidopsis thaliana, partial (72%)
Length = 1520
Score = 27.7 bits (60), Expect = 2.7
Identities = 19/62 (30%), Positives = 28/62 (44%)
Frame = -2
Query: 85 EFPQERPYTEEAETVENEEVMEVTEKEDRILIKEESMEEKGKKVNKVEIDRIIDEICALF 144
E P E P + T+ + V + L+ S +K+NKVEID+ +D I L
Sbjct: 1456 EIPIEDPIINKIHTMRFTWFLFVVTPLE*YLLTR-SANATSEKINKVEIDKRLDRILRLV 1280
Query: 145 NK 146
K
Sbjct: 1279 KK 1274
>TC90598 similar to GP|8953389|emb|CAB96662.1 putative protein {Arabidopsis
thaliana}, partial (18%)
Length = 602
Score = 27.3 bits (59), Expect = 3.5
Identities = 24/102 (23%), Positives = 46/102 (44%), Gaps = 3/102 (2%)
Frame = +3
Query: 27 DIQANIQSTHGKQENNSNTFEEVGKIVEEGVDDTEEDIILEECSTMKMVEEL---EPLHP 83
++ ++I + K++NN V K EE ++ EED E K+ E+L + L
Sbjct: 120 NLYSSIVTASSKKKNNKKKLTHVTKGNEEEEEEEEEDAF--ELLFKKLEEDLKNDDDLSK 293
Query: 84 EEFPQERPYTEEAETVENEEVMEVTEKEDRILIKEESMEEKG 125
++ ++ +EE + E+ V D L+ + E +G
Sbjct: 294 DDSDEDDEISEEDFALLERELEGVLGDFDAELLNTDISETQG 419
>AW126356 similar to GP|22758342|gb| hypothetical protein {Oryza sativa
(japonica cultivar-group)}, partial (17%)
Length = 468
Score = 27.3 bits (59), Expect = 3.5
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +2
Query: 102 EEVMEVTEKEDRILIKEESMEEKGKKVNKVEIDRIIDEICALFNKPKLGRIWTPHQLYFK 161
E +M KE++ +EE EE KKV K E+D ++ +N+ K P+Q Y++
Sbjct: 221 EIIMIGPAKEEK---EEEKKEEPKKKVTKEELDDLVKAYETYYNEMKQP---YPYQ-YYR 379
Query: 162 FMEFLPTRRIEKDDVL 177
+E P+ + D+L
Sbjct: 380 SVEESPSGCVIC*DIL 427
>TC79051 similar to GP|10120444|gb|AAG13069.1 Unknown protein {Arabidopsis
thaliana}, partial (74%)
Length = 1115
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 57 VDDTEEDIILEECSTMKMVEELEPLHPEE 85
VDD E +I LEEC V +LE L E+
Sbjct: 565 VDDAESEIGLEECVHHDAVAKLEDLERED 479
>TC87818 similar to GP|20197082|gb|AAC26698.2 putative katanin {Arabidopsis
thaliana}, partial (62%)
Length = 984
Score = 26.6 bits (57), Expect = 6.0
Identities = 18/59 (30%), Positives = 29/59 (48%)
Frame = +2
Query: 74 MVEELEPLHPEEFPQERPYTEEAETVENEEVMEVTEKEDRILIKEESMEEKGKKVNKVE 132
M EEL PL P+E P PY + E ++ R+L KE +M+ + + ++E
Sbjct: 410 MFEELLPLQPDEEPM--PYDLLVDRTEGYSGSDI-----RLLCKETAMQPLRRLMTQLE 565
>TC93371 weakly similar to PIR|C85432|C85432 hypothetical protein AT4g36610
[imported] - Arabidopsis thaliana, partial (71%)
Length = 742
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/63 (23%), Positives = 33/63 (51%), Gaps = 1/63 (1%)
Frame = +2
Query: 116 IKEESMEEKG-KKVNKVEIDRIIDEICALFNKPKLGRIWTPHQLYFKFMEFLPTRRIEKD 174
I S++E G +++ + + + AL + ++W P +L+ F+E + T R E+
Sbjct: 512 ISVSSLQELGFSSSSELLLPNSVKGLKALLSVAAYKKLWFPDRLHKDFLEVMFTNRKERG 691
Query: 175 DVL 177
++L
Sbjct: 692 ELL 700
>TC82821 weakly similar to GP|17979408|gb|AAL49846.1 putative ethylene
reponse factor AP2 domain transcription factor
{Arabidopsis thaliana}, partial (9%)
Length = 547
Score = 26.6 bits (57), Expect = 6.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 95 EAETVENEEVMEVTEKEDRILIKEESMEEKGKKV 128
+A+ +EN+E E E ED +IKE+ +E G+ +
Sbjct: 310 KAKNLENDEAEESEEHEDEKIIKED--KESGRSM 215
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,551,838
Number of Sequences: 36976
Number of extensions: 48610
Number of successful extensions: 269
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of query: 184
length of database: 9,014,727
effective HSP length: 90
effective length of query: 94
effective length of database: 5,686,887
effective search space: 534567378
effective search space used: 534567378
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC119412.2