BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149600.2 + phase: 0 /pseudo
(91 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW720377 35 0.002
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 31 0.033
TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%) 31 0.043
TC8953 31 0.043
TC10346 30 0.056
TC17012 similar to UP|SRR1_ARATH (Q8GWZ6) Protein SENSITIVITY TO... 26 0.065
BP052725 30 0.073
AV408247 30 0.095
BI420244 30 0.095
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 29 0.16
TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.3... 29 0.16
AW719782 29 0.16
TC13540 similar to PIR|C86255|C86255 protein F12F1.11 [imported]... 29 0.16
TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing fact... 29 0.16
TC12802 29 0.16
TC12360 similar to UP|O22196 (O22196) At2g40820 protein, partial... 28 0.21
TC14097 homologue to UP|GCSP_PEA (P26969) Glycine dehydrogenase ... 28 0.21
TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor S... 28 0.21
TC18187 similar to GB|AAO42875.1|28416689|BT004629 At3g50340 {Ar... 28 0.21
TC9743 similar to UP|AAQ89667 (AAQ89667) At5g25170, partial (36%) 28 0.28
>AW720377
Length = 597
Score = 35.0 bits (79), Expect = 0.002
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 43 YPPPPPPPPSCVFPT 57
YPPPPPPPPS +PT
Sbjct: 316 YPPPPPPPPSTSYPT 360
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 31.2 bits (69), Expect = 0.033
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 44 PPPPPPPPSCVFPTF 58
PPPPPPPP FP F
Sbjct: 745 PPPPPPPPPPFFPPF 789
>TC8581 similar to UP|Q94II4 (Q94II4) NAM-like protein, partial (9%)
Length = 1158
Score = 30.8 bits (68), Expect = 0.043
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = -3
Query: 44 PPPPPPPPSCVFPTF 58
PPPPPPPP + P F
Sbjct: 367 PPPPPPPPKFIIPWF 323
Score = 28.9 bits (63), Expect = 0.16
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 43 YPPPPPPPP 51
YPPPPPPPP
Sbjct: 373 YPPPPPPPP 347
>TC8953
Length = 661
Score = 30.8 bits (68), Expect = 0.043
Identities = 14/39 (35%), Positives = 19/39 (47%)
Frame = +1
Query: 44 PPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSS 82
PPPPPP P + P G V E +NN + D + +
Sbjct: 97 PPPPPPAPKGMLPFLVGAV---ERKNNPADSLADEQEDA 204
>TC10346
Length = 522
Score = 30.4 bits (67), Expect = 0.056
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 42 RYPPPPPPPPSCVFPTFTGVVKVM 65
R+PPPPPPPP C+ + V+ M
Sbjct: 393 RFPPPPPPPP-CLATIYLDEVQAM 325
>TC17012 similar to UP|SRR1_ARATH (Q8GWZ6) Protein SENSITIVITY TO RED LIGHT
REDUCED 1, partial (29%)
Length = 557
Score = 26.2 bits (56), Expect(2) = 0.065
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 43 YPPPPPPP 50
YPPPPPPP
Sbjct: 476 YPPPPPPP 499
Score = 23.5 bits (49), Expect = 6.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 45 PPPPPPP 51
PPPPPPP
Sbjct: 479 PPPPPPP 499
Score = 22.7 bits (47), Expect(2) = 0.065
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 46 PPPPPPSCVFPTFTGVVKVM 65
PPPPPP+ + F+ + V+
Sbjct: 481 PPPPPPNILKNCFSDEICVL 540
>BP052725
Length = 334
Score = 30.0 bits (66), Expect = 0.073
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Frame = -2
Query: 44 PPPPPPPPS----CVFPTFTGVV 62
PPPPPPPPS CV+ F +
Sbjct: 78 PPPPPPPPSLLEVCVYKPFVSKI 10
Score = 24.3 bits (51), Expect = 4.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 43 YPPPPPPPP 51
+P PPPPPP
Sbjct: 82 FPAPPPPPP 56
Score = 24.3 bits (51), Expect = 4.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 42 RYPPPPPPP 50
R PPPPPPP
Sbjct: 77 RPPPPPPPP 51
Score = 23.9 bits (50), Expect = 5.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 43 YPPPPPPPP 51
+P PPPPPP
Sbjct: 83 FPRPPPPPP 57
>AV408247
Length = 394
Score = 29.6 bits (65), Expect = 0.095
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = -3
Query: 44 PPPPPPPPSCVFPTFTG 60
P PPPPPP+C P G
Sbjct: 380 PNPPPPPPACCLPCGAG 330
>BI420244
Length = 571
Score = 29.6 bits (65), Expect = 0.095
Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 6/45 (13%)
Frame = +1
Query: 44 PPPPPPPPSCVFPTF------TGVVKVMENQNNTSSFSVDVENSS 82
PPPPPPPP V T+ T + E T SF D+ +S
Sbjct: 97 PPPPPPPPRRVSATWNA*STPTTTHLLPEQSTPTGSFPADLPPNS 231
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 28.9 bits (63), Expect = 0.16
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 43 YPPPPPPPP 51
YPPPPPPPP
Sbjct: 627 YPPPPPPPP 601
Score = 26.2 bits (56), Expect = 1.0
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 42 RYPPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENS-SW 83
R PPPPP PPS P + +SF+V + S SW
Sbjct: 675 RLPPPPPYPPSRRPPPYPPPPPPPPRPRAWASFTVTLRPSMSW 547
Score = 25.0 bits (53), Expect = 2.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 42 RYPPPPPPPPS 52
R PP PPPPPS
Sbjct: 771 RLPP*PPPPPS 739
>TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.33), partial
(12%)
Length = 565
Score = 28.9 bits (63), Expect = 0.16
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 44 PPPPPPPPSCVFPT 57
PPPPPPPPS P+
Sbjct: 431 PPPPPPPPSPTAPS 472
Score = 26.2 bits (56), Expect = 1.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 428 PPPPPPPP 451
Score = 24.3 bits (51), Expect = 4.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +2
Query: 43 YPPPPPPPP 51
+ PPPPPPP
Sbjct: 422 FSPPPPPPP 448
>AW719782
Length = 428
Score = 28.9 bits (63), Expect = 0.16
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = +2
Query: 45 PPPPPPPSCVFPTFT 59
PPPPPPP + P FT
Sbjct: 155 PPPPPPPHSLSPLFT 199
Score = 24.3 bits (51), Expect = 4.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 45 PPPPPPPSCVFPT 57
PPPPPPP+ + T
Sbjct: 274 PPPPPPPAVEWRT 236
Score = 23.5 bits (49), Expect = 6.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 44 PPPPPPP 50
PPPPPPP
Sbjct: 274 PPPPPPP 254
>TC13540 similar to PIR|C86255|C86255 protein F12F1.11 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(10%)
Length = 564
Score = 28.9 bits (63), Expect = 0.16
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = -1
Query: 45 PPPPPPPSCVFPTFTGVVKVMENQNNTSS 73
PPPPPPP P +V V + N+ S+
Sbjct: 129 PPPPPPPKPPLPLLFTLVSVSPSTNSGSA 43
>TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing factor 18
(PRP18 homolog) (hPRP18), partial (8%)
Length = 563
Score = 28.9 bits (63), Expect = 0.16
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = +1
Query: 44 PPPPPPPPSCVFPTFTGVVKVMENQNNTSSFSVDVENSSWESSSQDSS 91
PPPPPPPP P ++ +T+S S++ ++S+ +SS S
Sbjct: 226 PPPPPPPPPTPPP------HPPTSRTSTTSSSLNKKSSAASASSSSPS 351
>TC12802
Length = 574
Score = 28.9 bits (63), Expect = 0.16
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 43 YPPPPPPPP 51
YPPPPPPPP
Sbjct: 133 YPPPPPPPP 159
Score = 26.2 bits (56), Expect = 1.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 44 PPPPPPPP 51
PPPPPPPP
Sbjct: 139 PPPPPPPP 162
>TC12360 similar to UP|O22196 (O22196) At2g40820 protein, partial (11%)
Length = 1030
Score = 28.5 bits (62), Expect = 0.21
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 43 YPPPPPPPPS 52
+PPPPPPPPS
Sbjct: 732 HPPPPPPPPS 761
Score = 25.8 bits (55), Expect = 1.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 42 RYPPPPPPPPSCVFPTFTGVVKVMENQNN 70
R PPPPPPP P+ TG + N+
Sbjct: 726 RTHPPPPPPP----PSNTGYIPSFHPSND 800
>TC14097 homologue to UP|GCSP_PEA (P26969) Glycine dehydrogenase
[decarboxylating], mitochondrial precursor (Glycine
decarboxylase) (Glycine cleavage system P-protein) ,
partial (97%)
Length = 3660
Score = 28.5 bits (62), Expect = 0.21
Identities = 14/39 (35%), Positives = 17/39 (42%), Gaps = 9/39 (23%)
Frame = +3
Query: 45 PPPPPPPSCVF---------PTFTGVVKVMENQNNTSSF 74
PPPPPPP C F P F + E+ N +F
Sbjct: 213 PPPPPPPPCRFTPLLPPGTCPLFLTLFSETEDPNQPPTF 329
>TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor SF2-like
protein, partial (46%)
Length = 597
Score = 28.5 bits (62), Expect = 0.21
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = -2
Query: 42 RYPPPPPPPPSCVFP 56
R PPPPPPPP +P
Sbjct: 557 RPPPPPPPPPPPPYP 513
>TC18187 similar to GB|AAO42875.1|28416689|BT004629 At3g50340 {Arabidopsis
thaliana;}, partial (30%)
Length = 480
Score = 28.5 bits (62), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +3
Query: 42 RYPPPPPPPPSCVFPT 57
++PPPPPP P C + T
Sbjct: 156 QHPPPPPPRPPCHYAT 203
>TC9743 similar to UP|AAQ89667 (AAQ89667) At5g25170, partial (36%)
Length = 552
Score = 28.1 bits (61), Expect = 0.28
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 42 RYPPPPPPPPS 52
+ PPPPPPPPS
Sbjct: 231 KQPPPPPPPPS 263
Score = 24.6 bits (52), Expect = 3.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 44 PPPPPPPPS 52
PPPPPPP S
Sbjct: 240 PPPPPPPSS 266
Score = 24.3 bits (51), Expect = 4.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 45 PPPPPPPSCVFPTFTGVV 62
PPPPPPP P +V
Sbjct: 237 PPPPPPPPSSSPMLCKLV 290
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.126 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,822,561
Number of Sequences: 28460
Number of extensions: 43899
Number of successful extensions: 3483
Number of sequences better than 10.0: 578
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of query: 91
length of database: 4,897,600
effective HSP length: 67
effective length of query: 24
effective length of database: 2,990,780
effective search space: 71778720
effective search space used: 71778720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)
Medicago: description of AC149600.2