BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149582.7 - phase: 0
(155 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein... 53 3e-08
TC9186 homologue to UP|Q9BIW6 (Q9BIW6) Brahma-associated protein... 39 3e-04
TC8576 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein (At2g3622... 34 0.013
TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, ... 30 0.14
TC19784 weakly similar to UP|Q8S9L3 (Q8S9L3) AT4g38220/F20D10_34... 29 0.32
TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), p... 28 0.54
TC9766 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g06210/... 28 0.70
TC7822 similar to UP|Q42139 (Q42139) H+-transporting ATP synthas... 28 0.92
TC14223 similar to UP|Q8GZV0 (Q8GZV0) Obtusifoliol-14-demethylas... 27 1.2
BP060547 26 2.7
TC16618 26 2.7
TC18808 similar to UP|Q940S9 (Q940S9) AT3g57890/T10K17_100, part... 26 3.5
TC15683 weakly similar to UP|Q8GTM1 (Q8GTM1) WD40, partial (4%) 26 3.5
BI417263 26 3.5
TC13258 25 4.6
TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTS... 25 5.9
TC18157 weakly similar to UP|Q8H0P7 (Q8H0P7) Serine acetyltransf... 25 5.9
AW719611 25 5.9
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par... 25 7.8
TC10205 weakly similar to UP|Q8RL77 (Q8RL77) HpaG, partial (10%) 25 7.8
>TC8312 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1,
partial (46%)
Length = 1358
Score = 52.8 bits (125), Expect = 3e-08
Identities = 37/116 (31%), Positives = 55/116 (46%), Gaps = 28/116 (24%)
Frame = +2
Query: 62 REPSSPKVSCMGQVKSKK---KKRKAKRIHQ--------SSTKNNDSVTSHENKKILLQS 110
REP+SPK+SCMGQ+K KK KK K+K+ +ST N + TS N +++
Sbjct: 398 REPTSPKISCMGQIKHKKNQIKKSKSKKSVSLQNETRKFASTTNKTTTTSTSNSTDVIEV 577
Query: 111 EKALVVEENQ-----------------EFAPSMLIVPSLGTMKKFESGRGSLSDFD 149
+K V + Q + + + P + MK+F SGR + S FD
Sbjct: 578 KKKNVASKFQRMLFHAAKQPKSAGRKSDASSAEREAPHMSQMKRFSSGRDAFSSFD 745
>TC9186 homologue to UP|Q9BIW6 (Q9BIW6) Brahma-associated protein 111kD,
partial (3%)
Length = 618
Score = 39.3 bits (90), Expect = 3e-04
Identities = 19/56 (33%), Positives = 30/56 (52%)
Frame = +1
Query: 45 IIPKEARRKHRSISFSAREPSSPKVSCMGQVKSKKKKRKAKRIHQSSTKNNDSVTS 100
+ PK + EP SPKVSC+G+V+SK+ + + R Q S + SV++
Sbjct: 406 LFPKRSASVRSKSDTVVIEPLSPKVSCIGRVRSKRDRNRRLRTRQRSISSTTSVSA 573
>TC8576 similar to UP|Q9SJN3 (Q9SJN3) At2g36220 protein
(At2g36220/F2H17.17), partial (17%)
Length = 604
Score = 33.9 bits (76), Expect = 0.013
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 43 VSIIPKEARRKHRSISFSAREPSSPKVSCMGQVK 76
+ + PK + +S++ A EPSSPKVSCMG+V+
Sbjct: 505 IKLFPKRSVSVTKSVTSHA-EPSSPKVSCMGRVR 603
>TC14246 similar to UP|Q84LL6 (Q84LL6) Salt tolerance protein 5, partial
(57%)
Length = 1280
Score = 30.4 bits (67), Expect = 0.14
Identities = 28/111 (25%), Positives = 50/111 (44%), Gaps = 2/111 (1%)
Frame = +1
Query: 25 SYQNPTLSPNASVTTARK--VSIIPKEARRKHRSISFSAREPSSPKVSCMGQVKSKKKKR 82
S P+ SP + T R + + + R F A E + +V+ + V++ ++KR
Sbjct: 175 SQSKPSPSPTFAATFDRSNPAAFLERVFDFVSRESDFLATEAAEKEVASL--VRAAREKR 348
Query: 83 KAKRIHQSSTKNNDSVTSHENKKILLQSEKALVVEENQEFAPSMLIVPSLG 133
K KR + + + +K L ++EK EEN + + IVP+ G
Sbjct: 349 KKKREEELKASEEKA----KAEKRLKEAEKKPKAEENDKKEGTAAIVPNKG 489
>TC19784 weakly similar to UP|Q8S9L3 (Q8S9L3) AT4g38220/F20D10_340, partial
(21%)
Length = 415
Score = 29.3 bits (64), Expect = 0.32
Identities = 26/91 (28%), Positives = 42/91 (45%)
Frame = +2
Query: 58 SFSAREPSSPKVSCMGQVKSKKKKRKAKRIHQSSTKNNDSVTSHENKKILLQSEKALVVE 117
SFS+ SS + + K KKKK+++ + +++K+ + +H KK
Sbjct: 62 SFSSSSSSSLQSR*Q*KKKKKKKKKQSSLVSSNTSKSKLTNQTHVTKK------------ 205
Query: 118 ENQEFAPSMLIVPSLGTMKKFESGRGSLSDF 148
+Q F+ S PS K S +GSLS F
Sbjct: 206 -HQSFS-SHKPNPSHSNSKPSSSSQGSLSSF 292
>TC13322 similar to UP|Q9ZS13 (Q9ZS13) RNA helicase (Fragment), partial (7%)
Length = 528
Score = 28.5 bits (62), Expect = 0.54
Identities = 25/84 (29%), Positives = 37/84 (43%), Gaps = 14/84 (16%)
Frame = +3
Query: 52 RKHRSISFSA----REPSSPKVSCMGQVKSKKKKRKAKRIHQSSTK----------NNDS 97
RKH +++ S P+SP++ KKKK+K K HQ+ K +N +
Sbjct: 60 RKHDAVAASEPVADEAPNSPELQ-----SEKKKKKKNKDKHQNGEKTSPKRKLEELDNQN 224
Query: 98 VTSHENKKILLQSEKALVVEENQE 121
T E KK + + EEN E
Sbjct: 225 GTESEKKKKKKKEKHDNKSEENAE 296
Score = 26.6 bits (57), Expect = 2.0
Identities = 13/56 (23%), Positives = 28/56 (49%)
Frame = +3
Query: 48 KEARRKHRSISFSAREPSSPKVSCMGQVKSKKKKRKAKRIHQSSTKNNDSVTSHEN 103
K+ + KH++ ++ + ++ +S+KKK+K K H + ++ N T N
Sbjct: 147 KKNKDKHQNGEKTSPKRKLEELDNQNGTESEKKKKKKKEKHDNKSEENAEETKEAN 314
>TC9766 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g06210/F9P14_4),
partial (43%)
Length = 640
Score = 28.1 bits (61), Expect = 0.70
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 23 VSSYQNPTLSPNASVTTARKVSIIPKEARRKHRSISFSAREPSSPKVS 70
+SS P +P AS R+ S IP ARR S + +PS P S
Sbjct: 292 ISSDSCPNSAPPASPAWLRRPSWIPASARRGDPSPCRTRSDPSGPHPS 149
>TC7822 similar to UP|Q42139 (Q42139) H+-transporting ATP synthase CHAIN9 -
like protein (AT4G32260/F10M6_100) , partial (76%)
Length = 907
Score = 27.7 bits (60), Expect = 0.92
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 5/75 (6%)
Frame = -2
Query: 16 PKRPVASVSSYQNPTLSPNASVTTARKVSIIPKEARRKHRSISFSAREPSSPK-----VS 70
P P + SSY P +SP+A +T R S P A + S + P SP+ S
Sbjct: 597 PPPPASPSSSYSTPPISPHAPPSTPR--SPAPPAASPPTKCPSRCSASP*SPRPCRP*TS 424
Query: 71 CMGQVKSKKKKRKAK 85
G+ KS +++ K
Sbjct: 423 RAGRSKSCQEQPSGK 379
>TC14223 similar to UP|Q8GZV0 (Q8GZV0) Obtusifoliol-14-demethylase, complete
Length = 1917
Score = 27.3 bits (59), Expect = 1.2
Identities = 21/77 (27%), Positives = 34/77 (43%)
Frame = +1
Query: 24 SSYQNPTLSPNASVTTARKVSIIPKEARRKHRSISFSAREPSSPKVSCMGQVKSKKKKRK 83
SS P+ SP++S ++ R+ S FSA PSS S + +S ++
Sbjct: 136 SSSSPPSPSPSSSSPSS--------SPNRRKTSPQFSADFPSSAASSASSKARSSCSEKS 291
Query: 84 AKRIHQSSTKNNDSVTS 100
+ SS N+ + TS
Sbjct: 292 TRNSAASSPSNSSTGTS 342
>BP060547
Length = 276
Score = 26.2 bits (56), Expect = 2.7
Identities = 11/47 (23%), Positives = 26/47 (54%)
Frame = +2
Query: 46 IPKEARRKHRSISFSAREPSSPKVSCMGQVKSKKKKRKAKRIHQSST 92
+PK +++ H+ + + P S + + KSKK+++ I++ +T
Sbjct: 101 LPKTSKKPHKKL*SQTKTPRSAQPXKVPHWKSKKQRQXTNPINRHNT 241
>TC16618
Length = 1228
Score = 26.2 bits (56), Expect = 2.7
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 15 LPKRPVASVSSYQNPTLSPNASVTTAR 41
+PK P+ ++S Y++PT +P+ T+A+
Sbjct: 641 IPKNPIITISVYKSPT-TPSCIFTSAK 718
>TC18808 similar to UP|Q940S9 (Q940S9) AT3g57890/T10K17_100, partial (44%)
Length = 854
Score = 25.8 bits (55), Expect = 3.5
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 4/135 (2%)
Frame = +2
Query: 15 LPKRPVASVSSYQ-NPTLSPNASVTTARKVSIIPKEARRKHRSISFSAREPSSPKVSCMG 73
L RPV + +S+ P +PN A ++ + P R+HR ++ R+ + + +
Sbjct: 122 LRARPVTNPASHLLRPDANPNLVEAEASRIVLQPPCRLRRHRRVASDLRQHARLVLDTLA 301
Query: 74 QVKSKKKKRKAKRIHQSSTKNNDSVTSHENKKIL---LQSEKALVVEENQEFAPSMLIVP 130
V A+ + + DSV + +L +QS K L+ +++ A + P
Sbjct: 302 SVLHS----DAEPLVAAGLGETDSVGVDVHDLVLFLYIQSYKRLLPRTHKDSAAVADVWP 469
Query: 131 SLGTMKKFESGRGSL 145
S + S L
Sbjct: 470 STSAFDGYLSALSPL 514
>TC15683 weakly similar to UP|Q8GTM1 (Q8GTM1) WD40, partial (4%)
Length = 957
Score = 25.8 bits (55), Expect = 3.5
Identities = 18/71 (25%), Positives = 37/71 (51%), Gaps = 7/71 (9%)
Frame = +2
Query: 58 SFSAREPSS------PKVSCMGQVKSKKKKRKAKRIHQSSTKNNDSVTSH-ENKKILLQS 110
SF EPSS K + ++ ++++ + + S++N ++ T++ E KK QS
Sbjct: 398 SFIVEEPSSGADGLPSKAQNLNEIAAEEEVEPSPLKRKKSSRNKENNTNNSERKKRSKQS 577
Query: 111 EKALVVEENQE 121
E+ ++ N+E
Sbjct: 578 EEGKKLKGNEE 610
>BI417263
Length = 539
Score = 25.8 bits (55), Expect = 3.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 76 KSKKKKRKAKRIHQSSTKNNDSVTSHENKKILLQSEKALVVEENQE 121
K K KKR+ +R+ + ++++ HE + L + +E+ QE
Sbjct: 76 KKKTKKREGERVSVFNNEDDEGWQGHEPYRCLPEGASEEGIEKEQE 213
>TC13258
Length = 506
Score = 25.4 bits (54), Expect = 4.6
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +2
Query: 15 LPKRPVASVSSYQNPTLSPNASVTTARKVSIIPKEA 50
+PK+ V ++ P L PN S+ + +++ PK+A
Sbjct: 131 VPKQQVTNIHQLPTPVLQPNVSL-APQSMNVDPKKA 235
>TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTSR1, partial
(7%)
Length = 1473
Score = 25.0 bits (53), Expect = 5.9
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 16 PKRPVASVSSYQNPTLSPNASVTTARKVSIIPKEARR--KHRSISFSAREPSSPKVSCMG 73
P+R + +Q +VTT K+ RR +HRS + EP+ PK+ +
Sbjct: 920 PRRQNSHTKHHQRRRAPHPNTVTTVDHKQEFAKQTRRVAQHRSTR-AVFEPTPPKLEPLK 1096
Query: 74 QVKSKKKKRKAKR 86
Q++++ + A R
Sbjct: 1097QLQAEGRTSDAAR 1135
>TC18157 weakly similar to UP|Q8H0P7 (Q8H0P7) Serine acetyltransferase 1
(Fragment) , partial (25%)
Length = 512
Score = 25.0 bits (53), Expect = 5.9
Identities = 15/38 (39%), Positives = 19/38 (49%)
Frame = +3
Query: 30 TLSPNASVTTARKVSIIPKEARRKHRSISFSAREPSSP 67
TLSP A+ + VS+ K + R SFS R P P
Sbjct: 48 TLSPMATCVDSSTVSLSRKPNGSQFRRPSFSDRVPHMP 161
>AW719611
Length = 549
Score = 25.0 bits (53), Expect = 5.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 97 SVTSHENKKILLQSEKALVVEENQEFAPSMLIVPSLGTM 135
S+T +E +K+ S+ +EE P+ L++ SLG+M
Sbjct: 484 SITXNETQKLKSISK----IEETHPLPPTSLLLASLGSM 380
>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
Length = 1277
Score = 24.6 bits (52), Expect = 7.8
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +2
Query: 21 ASVSSYQNPTLSPNASVTTARKVSII--PKEARRKHRSISFSAREPSSPKVSCMGQVKSK 78
A ++ P P A A K + P +A+ A+ ++P+++ V
Sbjct: 629 AKPAAAAKPKAKPAAKAKPAAKAKAVAAPAKAKASPAKPKAKAKSKTAPRMNVNPPVPKA 808
Query: 79 KKKRKAKRIHQSSTKNNDSVTSHENKKI 106
K KAK + + + S + KK+
Sbjct: 809 KPAAKAKPAARPAKASRTSTRTTPGKKV 892
>TC10205 weakly similar to UP|Q8RL77 (Q8RL77) HpaG, partial (10%)
Length = 586
Score = 24.6 bits (52), Expect = 7.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 78 KKKKRKAKRIHQSSTKNNDSVTSHENKK 105
K KKRK +I+ + + + +H+N K
Sbjct: 557 KSKKRKCLKIYTRENRAGEGIKTHKNVK 474
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.123 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,052,031
Number of Sequences: 28460
Number of extensions: 23456
Number of successful extensions: 171
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC149582.7