TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149576.7 + phase: 1 /pseudo
         (576 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP038017                                                               61  4e-10
TC11884                                                                59  2e-09
AV425218                                                               43  1e-04
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re...    42  3e-04
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp...    38  0.004
CN825057                                                               33  0.13
TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar...    28  3.1
TC18116 similar to UP|AAP32193 (AAP32193) Cysteine protease 14, ...    28  4.1
BP064697                                                               27  9.0

>BP038017 
          Length = 570

 Score = 61.2 bits (147), Expect = 4e-10
 Identities = 43/164 (26%), Positives = 71/164 (43%)
 Frame = +2

Query: 164 TNLKKKKKESITNIKRVYNECHKFKKAKRGDLTEMQYLISKLEENEYVNYVREKPESQIV 223
           T +K  +K ++   +   N  + FKK + G      Y I   +EN  +N           
Sbjct: 128 TYVKSSQKRTLG--RDAQNLLNYFKKMQ-GKNPGFYYAIQLDDENRMIN----------- 265

Query: 224 QDIFWTHPTSVKLFNTFPTVLIMDSTYKTNLYRMPLFEIVGVTSTYLTYSVGFAFMMSKK 283
             +FW    S   +N F   +I D+ Y+ N Y++P     GV         G A ++ + 
Sbjct: 266 --VFWADARSRSAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDES 439

Query: 284 EDNFTWALQMLLKLLKPNSDMPKVVVTDRDPSMMNAVANVLPDS 327
           E +FTW  +  L  +  N   P  + TD+D ++  AVA V P++
Sbjct: 440 ESSFTWLFRTWLSAM--NDRPPVSITTDQDRAIQAAVAQVFPET 565


>TC11884 
          Length = 557

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
 Frame = +1

Query: 435 HLGCRTTNRVEGAHGVVKEYLSTSKGDLGTCSQKIDEMLANQFGEIQSSFGRSVTVLEHR 494
           H G  T+NR EGAH  +K+ L   KGDL T       +  N+  EI +SF RS+  ++H 
Sbjct: 1   HFGTTTSNRAEGAHASLKKMLRDCKGDLATSWDASHSLTCNRHTEILASFERSIHRIDHI 180

Query: 495 YKDVTLYSGLGGHMSRQAMNFIFVEEARSR---KTLCIKKKT----CGC----VQRMSY 542
           +     Y+ + G +S + +  +  E  R +   +  C+ ++T    CGC     +R+SY
Sbjct: 181 FM-CPFYTNIRGFVSNKCLQLLDAEHIRMKSYGRCDCLLRETHELPCGCELAGYERISY 354


>AV425218 
          Length = 419

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 33/123 (26%), Positives = 58/123 (46%), Gaps = 14/123 (11%)
 Frame = +2

Query: 258 PLFEIVGVTSTYLTYSVGFAFMMSKKEDNFTWALQMLLKLLKPNSDMPKVVVTDRDPSMM 317
           PL  +VGV     +   G A + S+  ++F W  Q LL  +  +   P+ ++TD   +M 
Sbjct: 5   PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCM--SGVPPQGIITDHSEAMK 178

Query: 318 NAVANVLPDSSAILCYFHVGKNIRSRIITDCKVK------QNV----VVVD----GQKKI 363
            A+  VLP +    C  ++ K +  +++   + +      QNV    VV+D      KKI
Sbjct: 179 KAIETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKI 358

Query: 364 VDE 366
           V++
Sbjct: 359 VED 367


>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
           protein-like, partial (4%)
          Length = 660

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
 Frame = +2

Query: 157 GETKKYLTN-LKKKKKESITNIKRVYNECHKFKKAKRGDLTE-MQYLISKLEENEYVNYV 214
           G TK  L+N + K K+E I N                GD    + YL  K + +    Y 
Sbjct: 83  GFTKTDLSNHIAKPKRERIQN----------------GDAAAALSYLEGKADNDPMFFYK 214

Query: 215 REKPESQIVQDIFWTHPTSVKLFNTFPTVLIMDSTYKTNLYRMPL 259
             K   + ++++FW    S   +N F  V+  DSTYK N Y  PL
Sbjct: 215 FTKTGDESLENLFWCDGVSRMDYNVFGDVIAFDSTYKKNKYNKPL 349


>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
           {Oryza sativa (japonica cultivar-group);}, partial (8%)
          Length = 488

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 23/105 (21%), Positives = 43/105 (40%)
 Frame = +1

Query: 198 MQYLISKLEENEYVNYVREKPESQIVQDIFWTHPTSVKLFNTFPTVLIMDSTYKTNLYRM 257
           +QY   KL EN    +  +  +   + ++FW     +  +  F  ++ +DSTY T+    
Sbjct: 58  LQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYCTHSSNR 237

Query: 258 PLFEIVGVTSTYLTYSVGFAFMMSKKEDNFTWALQMLLKLLKPNS 302
           PL    G          G A +  +  +++ W  +  L+  K  S
Sbjct: 238 PLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFLEAHKHES 372


>CN825057 
          Length = 721

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 24/86 (27%), Positives = 41/86 (46%), Gaps = 6/86 (6%)
 Frame = +1

Query: 186 KFKKAK-----RGDLTEM-QYLISKLEENEYVNYVREKPESQIVQDIFWTHPTSVKLFNT 239
           +FKK +      GD   M +Y     +EN    Y  +  E Q +++IFW    S+  + +
Sbjct: 439 QFKKGQYLAMDEGDAQVMLEYFKHIQKENPNFFYSIDLNEEQRLRNIFWIDAKSINDYLS 618

Query: 240 FPTVLIMDSTYKTNLYRMPLFEIVGV 265
           F  V+  D++Y  +  ++P    VGV
Sbjct: 619 FNDVVSFDTSYIKSNEKLPFAPFVGV 696


>TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
           thaliana;}, partial (28%)
          Length = 812

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -2

Query: 265 VTSTYLTYSVGFAFMMSKKEDNFTWALQMLLKLLKPNSDMPKVVVTDRDPSMMNAVANVL 324
           V+ST  TY  G    M  K     WA   +++LLKP  D+           ++ A A V+
Sbjct: 508 VSSTM*TYLAGVPTPMRVKYSPLPWARPEMMELLKPAPDLGAW-------ELLRAAAEVV 350

Query: 325 PDSSAI 330
              SA+
Sbjct: 349 KKDSAL 332


>TC18116 similar to UP|AAP32193 (AAP32193) Cysteine protease 14, partial
           (37%)
          Length = 555

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = -1

Query: 380 SEKLVESHTQELYAGNLVEFQDACKDHPKF 409
           S  L+ SH Q+L   +LVEF  A + HP +
Sbjct: 273 SPSLLMSHIQQLLHHDLVEFHSAHQKHPHY 184


>BP064697 
          Length = 439

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
 Frame = -2

Query: 404 KDHPKFLEYVETTTLKPFKDKLVRAWMELVLHLGCRTTNRVEGA---HGVVK 452
           K+HPKFL++          + L +  M+L  H   R   ++E     HGVV+
Sbjct: 288 KNHPKFLKFACYNKENQSSEPLFQCKMQLETHAEKRKKKKLEEGRFIHGVVR 133


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.334    0.144    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,197,532
Number of Sequences: 28460
Number of extensions: 119593
Number of successful extensions: 813
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of query: 576
length of database: 4,897,600
effective HSP length: 95
effective length of query: 481
effective length of database: 2,193,900
effective search space: 1055265900
effective search space used: 1055265900
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)