Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149576.2 + phase: 0 
         (538 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17809 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol ...   274  3e-74
TC13815 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol ...   150  7e-37
AU251720                                                               31  0.58
TC12246 similar to UP|HAP2_YEAST (P06774) Transcriptional activa...    29  2.2
TC9372 weakly similar to UP|AAR87711 (AAR87711) Salicylic acid-b...    28  2.9
BP075761                                                               28  3.7
TC9221 similar to UP|O81875 (O81875) Carbonate dehydratase - lik...    28  3.7
TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%)     28  4.9
TC16668 similar to UP|CHLD_PEA (O22437) Magnesium-chelatase subu...    27  6.4
BP038008                                                               27  8.3

>TC17809 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol sterol
           acyltransferase-like protein, partial (29%)
          Length = 482

 Score =  274 bits (700), Expect = 3e-74
 Identities = 125/159 (78%), Positives = 138/159 (86%)
 Frame = +2

Query: 234 GWEQNFFISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHEDGKSHVILESY 293
           GWEQ FFISKWSMHQLLIECPSIYEL  CP+F W++ PLLELWRER H DGKSHVILESY
Sbjct: 5   GWEQKFFISKWSMHQLLIECPSIYELKGCPDFQWQNPPLLELWRERHHSDGKSHVILESY 184

Query: 294 PPRDSIEIFKQALVNNKVNHEGEELPLPFNSHIFEWANKTREILSSAKLPSGVKFYNIYG 353
           PPR+SIEIF+ AL+NN VNH+GEE+PLPFNS I  WA KT +ILSSAKLPS VKFYNIYG
Sbjct: 185 PPRESIEIFEHALLNNTVNHDGEEIPLPFNSEIMNWAYKTWDILSSAKLPSNVKFYNIYG 364

Query: 354 TNLATPHSICYGNADKPVSDLQELRYLQARYVCVDGDGT 392
           TNL T H +CYG+A  PVSDLQ+LRY QA+YVCVDGDGT
Sbjct: 365 TNLETAHCVCYGSASNPVSDLQQLRYSQAKYVCVDGDGT 481


>TC13815 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol sterol
           acyltransferase-like protein, partial (8%)
          Length = 462

 Score =  150 bits (378), Expect = 7e-37
 Identities = 77/102 (75%), Positives = 87/102 (84%), Gaps = 1/102 (0%)
 Frame = +2

Query: 437 PDPFYNPLNDYVILPTAFEMERHKEKGLEVASLKEEWEIISKDQDGQSNTGDNKMTLSSI 496
           PDPF NPLNDYVILPTAFE+ERH+EKGLEV SL++EWEIISKD D Q NT D +M+LSSI
Sbjct: 2   PDPFSNPLNDYVILPTAFEVERHQEKGLEVISLRDEWEIISKDPDAQGNTAD-EMSLSSI 178

Query: 497 SVSQEGA-NKSHSEAHATVFVHTDNDGKQHIELNAVAVSVDA 537
           SVS EG  N+S SEAHATV VH  N+GKQH+ LNA+AVSVDA
Sbjct: 179 SVSHEGTNNQSWSEAHATVTVHHGNEGKQHVHLNALAVSVDA 304


>AU251720 
          Length = 374

 Score = 30.8 bits (68), Expect = 0.58
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +2

Query: 395 VESAKADGFNAEERVGIPGEHR 416
           VE  KADG NA  RVGI  EHR
Sbjct: 308 VELDKADGLNAVARVGISDEHR 373


>TC12246 similar to UP|HAP2_YEAST (P06774) Transcriptional activator HAP2,
           partial (15%)
          Length = 558

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 14/39 (35%), Positives = 22/39 (55%)
 Frame = +3

Query: 17  RLIKKPQPQAYVNPNLDPVLLVPGVGGSILNAVNESDGS 55
           +LIK+ +P  + + +L  +    G GG  LN  N SDG+
Sbjct: 69  KLIKRSKPYMHESRHLHAMRRPRGCGGRFLNTRNSSDGN 185


>TC9372 weakly similar to UP|AAR87711 (AAR87711) Salicylic acid-binding
           protein 2, partial (65%)
          Length = 968

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 13/39 (33%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
 Frame = +2

Query: 156 ETMDRFAEKL-ELIYNAAGGKKIDLISHSMGGLLVKCFM 193
           +T+ +++E L +L+ +    KK+ L+ HS+GGL +   M
Sbjct: 164 DTISQYSEPLLQLMASIPSNKKVILVGHSLGGLNISLAM 280


>BP075761 
          Length = 512

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +2

Query: 312 NHEGEELPLPFNSHIFEWAN----KTREILSSAK 341
           N  GE L LPFNSHI  W N    KT+ + S +K
Sbjct: 359 NISGEGL-LPFNSHISFWMNGDKSKTQVVFSQSK 457


>TC9221 similar to UP|O81875 (O81875) Carbonate dehydratase - like protein
           (Carbonate dehydratase-like protein), partial (68%)
          Length = 571

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 14/46 (30%), Positives = 23/46 (49%)
 Frame = +1

Query: 165 LELIYNAAGGKKIDLISHSMGGLLVKCFMTLHSDIFEKYVKNWIAI 210
           LE   N    + I +I HS  G  ++  M++  D    ++KNW+ I
Sbjct: 7   LEFAVNTLQLENIFVIGHSCCGG-IRALMSMQDDASASFIKNWVVI 141


>TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%)
          Length = 722

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 21/83 (25%), Positives = 32/83 (38%)
 Frame = +2

Query: 277 RERLHEDGKSHVILESYPPRDSIEIFKQALVNNKVNHEGEELPLPFNSHIFEWANKTREI 336
           + R+H   +S++I             K  L + K NHE +    P +    +  NK R I
Sbjct: 296 KNRIHSSSESNLIK------------KPTLSSKKQNHESDAPHHPLDPLTIQEFNKVRTI 439

Query: 337 LSSAKLPSGVKFYNIYGTNLATP 359
           LS+  L      Y +    L  P
Sbjct: 440 LSTHPLFKSTSSYTLNSIVLEEP 508


>TC16668 similar to UP|CHLD_PEA (O22437) Magnesium-chelatase subunit chlD,
           chloroplast precursor  (Mg-protoporphyrin IX chelatase)
           (Mg-chelatase subunit D) , partial (16%)
          Length = 615

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 11/31 (35%), Positives = 19/31 (60%)
 Frame = -2

Query: 113 LVIGSEAVYYFHDMIVQMQKWGYQEGKTLFG 143
           L I S+ +  FH  I+ ++ WG+Q+ + L G
Sbjct: 221 LYISSQPLQEFHPSILSLKVWGHQQRQQLQG 129


>BP038008 
          Length = 509

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 417 GILCEPHLFRILKHWLKAGDPDPFYNPLNDYVILPTAFEMERHKEKGLEVASLKEEWE 474
           G+L  P    + KHW      D   NP++  ++LP A    R +++G +V  L +EW+
Sbjct: 20  GVLRMPRKL-VSKHW------DGISNPIS--LLLPGATWEVRWEKRGYDVIMLGDEWK 166


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,133
Number of Sequences: 28460
Number of extensions: 156010
Number of successful extensions: 704
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of query: 538
length of database: 4,897,600
effective HSP length: 95
effective length of query: 443
effective length of database: 2,193,900
effective search space: 971897700
effective search space used: 971897700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)


Medicago: description of AC149576.2