
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149576.2 + phase: 0
(538 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17809 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol ... 274 3e-74
TC13815 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol ... 150 7e-37
AU251720 31 0.58
TC12246 similar to UP|HAP2_YEAST (P06774) Transcriptional activa... 29 2.2
TC9372 weakly similar to UP|AAR87711 (AAR87711) Salicylic acid-b... 28 2.9
BP075761 28 3.7
TC9221 similar to UP|O81875 (O81875) Carbonate dehydratase - lik... 28 3.7
TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%) 28 4.9
TC16668 similar to UP|CHLD_PEA (O22437) Magnesium-chelatase subu... 27 6.4
BP038008 27 8.3
>TC17809 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol sterol
acyltransferase-like protein, partial (29%)
Length = 482
Score = 274 bits (700), Expect = 3e-74
Identities = 125/159 (78%), Positives = 138/159 (86%)
Frame = +2
Query: 234 GWEQNFFISKWSMHQLLIECPSIYELMACPNFHWKHVPLLELWRERLHEDGKSHVILESY 293
GWEQ FFISKWSMHQLLIECPSIYEL CP+F W++ PLLELWRER H DGKSHVILESY
Sbjct: 5 GWEQKFFISKWSMHQLLIECPSIYELKGCPDFQWQNPPLLELWRERHHSDGKSHVILESY 184
Query: 294 PPRDSIEIFKQALVNNKVNHEGEELPLPFNSHIFEWANKTREILSSAKLPSGVKFYNIYG 353
PPR+SIEIF+ AL+NN VNH+GEE+PLPFNS I WA KT +ILSSAKLPS VKFYNIYG
Sbjct: 185 PPRESIEIFEHALLNNTVNHDGEEIPLPFNSEIMNWAYKTWDILSSAKLPSNVKFYNIYG 364
Query: 354 TNLATPHSICYGNADKPVSDLQELRYLQARYVCVDGDGT 392
TNL T H +CYG+A PVSDLQ+LRY QA+YVCVDGDGT
Sbjct: 365 TNLETAHCVCYGSASNPVSDLQQLRYSQAKYVCVDGDGT 481
>TC13815 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol sterol
acyltransferase-like protein, partial (8%)
Length = 462
Score = 150 bits (378), Expect = 7e-37
Identities = 77/102 (75%), Positives = 87/102 (84%), Gaps = 1/102 (0%)
Frame = +2
Query: 437 PDPFYNPLNDYVILPTAFEMERHKEKGLEVASLKEEWEIISKDQDGQSNTGDNKMTLSSI 496
PDPF NPLNDYVILPTAFE+ERH+EKGLEV SL++EWEIISKD D Q NT D +M+LSSI
Sbjct: 2 PDPFSNPLNDYVILPTAFEVERHQEKGLEVISLRDEWEIISKDPDAQGNTAD-EMSLSSI 178
Query: 497 SVSQEGA-NKSHSEAHATVFVHTDNDGKQHIELNAVAVSVDA 537
SVS EG N+S SEAHATV VH N+GKQH+ LNA+AVSVDA
Sbjct: 179 SVSHEGTNNQSWSEAHATVTVHHGNEGKQHVHLNALAVSVDA 304
>AU251720
Length = 374
Score = 30.8 bits (68), Expect = 0.58
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +2
Query: 395 VESAKADGFNAEERVGIPGEHR 416
VE KADG NA RVGI EHR
Sbjct: 308 VELDKADGLNAVARVGISDEHR 373
>TC12246 similar to UP|HAP2_YEAST (P06774) Transcriptional activator HAP2,
partial (15%)
Length = 558
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +3
Query: 17 RLIKKPQPQAYVNPNLDPVLLVPGVGGSILNAVNESDGS 55
+LIK+ +P + + +L + G GG LN N SDG+
Sbjct: 69 KLIKRSKPYMHESRHLHAMRRPRGCGGRFLNTRNSSDGN 185
>TC9372 weakly similar to UP|AAR87711 (AAR87711) Salicylic acid-binding
protein 2, partial (65%)
Length = 968
Score = 28.5 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
Frame = +2
Query: 156 ETMDRFAEKL-ELIYNAAGGKKIDLISHSMGGLLVKCFM 193
+T+ +++E L +L+ + KK+ L+ HS+GGL + M
Sbjct: 164 DTISQYSEPLLQLMASIPSNKKVILVGHSLGGLNISLAM 280
>BP075761
Length = 512
Score = 28.1 bits (61), Expect = 3.7
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 312 NHEGEELPLPFNSHIFEWAN----KTREILSSAK 341
N GE L LPFNSHI W N KT+ + S +K
Sbjct: 359 NISGEGL-LPFNSHISFWMNGDKSKTQVVFSQSK 457
>TC9221 similar to UP|O81875 (O81875) Carbonate dehydratase - like protein
(Carbonate dehydratase-like protein), partial (68%)
Length = 571
Score = 28.1 bits (61), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (49%)
Frame = +1
Query: 165 LELIYNAAGGKKIDLISHSMGGLLVKCFMTLHSDIFEKYVKNWIAI 210
LE N + I +I HS G ++ M++ D ++KNW+ I
Sbjct: 7 LEFAVNTLQLENIFVIGHSCCGG-IRALMSMQDDASASFIKNWVVI 141
>TC13991 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (15%)
Length = 722
Score = 27.7 bits (60), Expect = 4.9
Identities = 21/83 (25%), Positives = 32/83 (38%)
Frame = +2
Query: 277 RERLHEDGKSHVILESYPPRDSIEIFKQALVNNKVNHEGEELPLPFNSHIFEWANKTREI 336
+ R+H +S++I K L + K NHE + P + + NK R I
Sbjct: 296 KNRIHSSSESNLIK------------KPTLSSKKQNHESDAPHHPLDPLTIQEFNKVRTI 439
Query: 337 LSSAKLPSGVKFYNIYGTNLATP 359
LS+ L Y + L P
Sbjct: 440 LSTHPLFKSTSSYTLNSIVLEEP 508
>TC16668 similar to UP|CHLD_PEA (O22437) Magnesium-chelatase subunit chlD,
chloroplast precursor (Mg-protoporphyrin IX chelatase)
(Mg-chelatase subunit D) , partial (16%)
Length = 615
Score = 27.3 bits (59), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = -2
Query: 113 LVIGSEAVYYFHDMIVQMQKWGYQEGKTLFG 143
L I S+ + FH I+ ++ WG+Q+ + L G
Sbjct: 221 LYISSQPLQEFHPSILSLKVWGHQQRQQLQG 129
>BP038008
Length = 509
Score = 26.9 bits (58), Expect = 8.3
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 417 GILCEPHLFRILKHWLKAGDPDPFYNPLNDYVILPTAFEMERHKEKGLEVASLKEEWE 474
G+L P + KHW D NP++ ++LP A R +++G +V L +EW+
Sbjct: 20 GVLRMPRKL-VSKHW------DGISNPIS--LLLPGATWEVRWEKRGYDVIMLGDEWK 166
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,133
Number of Sequences: 28460
Number of extensions: 156010
Number of successful extensions: 704
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of query: 538
length of database: 4,897,600
effective HSP length: 95
effective length of query: 443
effective length of database: 2,193,900
effective search space: 971897700
effective search space used: 971897700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149576.2