TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149576.1 - phase: 1 
         (110 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15239 UP|Q852R1 (Q852R1) Serine palmitoyltransferase, partial ...    28  0.17
TC20215 similar to AAS10104 (AAS10104) MYB transcription factor,...    27  0.66
TC12123 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {Ar...    24  3.3
BP028509                                                               24  4.3
TC8235 similar to UP|Q9LMR0 (Q9LMR0) F7H2.8 protein, partial (27%)     23  9.5
AV779188                                                               23  9.5
TC11730                                                                23  9.5
TC11406                                                                23  9.5
TC8645 similar to UP|Q9FKS5 (Q9FKS5) Cytochrome c1, partial (47%)      23  9.5
TC8644 similar to UP|Q9FKS5 (Q9FKS5) Cytochrome c1, partial (45%)      23  9.5

>TC15239 UP|Q852R1 (Q852R1) Serine palmitoyltransferase, partial (81%)
          Length = 1896

 Score = 28.5 bits (62), Expect = 0.17
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 30  IQPGSTLFTKDLQRNGV----DTEEEIYRVTYYGKGRMPGFGKECM 71
           I+  S  F  +LQ+ G     D +  +  +  Y   ++P F +EC+
Sbjct: 842 IRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL 979


>TC20215 similar to AAS10104 (AAS10104) MYB transcription factor, partial
           (35%)
          Length = 464

 Score = 26.6 bits (57), Expect = 0.66
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 61  GRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGWPSI 105
           GR P   K  + RG      R  +E+ KIL +F+K   +  W S+
Sbjct: 32  GRAPCCEKVGLKRG------RWSEEEDKILTDFIKQNGEGSWKSL 148


>TC12123 similar to GB|AAO39931.1|28372898|BT003703 At4g28730 {Arabidopsis
           thaliana;}, partial (47%)
          Length = 511

 Score = 24.3 bits (51), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 77  TFGARLEDEDIKILAEFVKLQADKGWPSIETEQK 110
           +FG+RLED   K +A+   +   K W S  +E K
Sbjct: 280 SFGSRLEDTIKKTVADNPVVVYSKTWCSYSSEVK 381


>BP028509 
          Length = 551

 Score = 23.9 bits (50), Expect = 4.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 3   AQTIDIQRGATLFSQTCIGCHDAGGNII 30
           A TID + G      +CIG H + G+ I
Sbjct: 271 ANTIDAESGVFPGKNSCIGIHSSFGHNI 354


>TC8235 similar to UP|Q9LMR0 (Q9LMR0) F7H2.8 protein, partial (27%)
          Length = 847

 Score = 22.7 bits (47), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (56%)
 Frame = +2

Query: 78  FGARLEDEDIKILAEFVKLQA 98
           FGAR+ D     L  F KLQ+
Sbjct: 83  FGARISDSGTAYLRSFKKLQS 145


>AV779188 
          Length = 350

 Score = 22.7 bits (47), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (50%), Gaps = 1/29 (3%)
 Frame = +2

Query: 54  RVTYY-GKGRMPGFGKECMPRGQCTFGAR 81
           R+ Y+  + R+PG       RGQC  G R
Sbjct: 155 RLRYHRSRNRLPGERGVVAARGQCLLGVR 241


>TC11730 
          Length = 914

 Score = 22.7 bits (47), Expect = 9.5
 Identities = 10/24 (41%), Positives = 12/24 (49%)
 Frame = +2

Query: 7   DIQRGATLFSQTCIGCHDAGGNII 30
           D+   A L S  C GC D   NI+
Sbjct: 623 DVATKAILRSGICYGCKDTISNIV 694


>TC11406 
          Length = 447

 Score = 22.7 bits (47), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (53%)
 Frame = -3

Query: 73  RGQCTFGARLEDEDIKILAEFVKL 96
           RG   F   L   +IKI A F+KL
Sbjct: 409 RGLLNFNKLLSTSNIKITAYFIKL 338


>TC8645 similar to UP|Q9FKS5 (Q9FKS5) Cytochrome c1, partial (47%)
          Length = 622

 Score = 22.7 bits (47), Expect = 9.5
 Identities = 7/16 (43%), Positives = 10/16 (61%)
 Frame = +1

Query: 8   IQRGATLFSQTCIGCH 23
           I+RG  ++ Q C  CH
Sbjct: 397 IRRGHQVYQQVCASCH 444


>TC8644 similar to UP|Q9FKS5 (Q9FKS5) Cytochrome c1, partial (45%)
          Length = 564

 Score = 22.7 bits (47), Expect = 9.5
 Identities = 7/16 (43%), Positives = 10/16 (61%)
 Frame = +3

Query: 8   IQRGATLFSQTCIGCH 23
           I+RG  ++ Q C  CH
Sbjct: 354 IRRGHQVYQQVCASCH 401


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,704,118
Number of Sequences: 28460
Number of extensions: 18281
Number of successful extensions: 56
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of query: 110
length of database: 4,897,600
effective HSP length: 86
effective length of query: 24
effective length of database: 2,450,040
effective search space: 58800960
effective search space used: 58800960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)