TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149574.8 + phase: 0 /pseudo
         (868 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8124 weakly similar to UP|IF5Z_ARATH (Q9S825) Probable eukaryo...    32  0.56
BP063282                                                               32  0.56

>TC8124 weakly similar to UP|IF5Z_ARATH (Q9S825) Probable eukaryotic
           translation initiation factor 5-2 (eIF-5 2), partial
           (5%)
          Length = 884

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 601 LHGQISSIA--YSNGC*ITRCGERSFQTSRRR 630
           LHG I+ I   + N C +T+C  RSF TSR R
Sbjct: 690 LHGPIAFIVLVHFNCCKVTKCESRSFHTSRNR 785


>BP063282 
          Length = 519

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 601 LHGQISSIA--YSNGC*ITRCGERSFQTSRRR 630
           LHG I+ I   + N C +T+C  RSF TSR R
Sbjct: 205 LHGPIAFIVLVHFNCCKVTKCESRSFHTSRNR 110


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.372    0.163    0.676 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,967,608
Number of Sequences: 28460
Number of extensions: 289285
Number of successful extensions: 3558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 1595
Number of HSP's gapped (non-prelim): 2129
length of query: 868
length of database: 4,897,600
effective HSP length: 98
effective length of query: 770
effective length of database: 2,108,520
effective search space: 1623560400
effective search space used: 1623560400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (22.0 bits)
S2: 59 (27.3 bits)