
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149496.4 - phase: 0
(475 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP036716 33 0.13
TC16890 30 0.66
TC18263 similar to GB|AAM55302.1|28624758|AY115841 auxin influx ... 30 1.1
TC9012 25 2.8
TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-l... 28 4.3
TC13225 28 4.3
TC15019 UP|Q9FY16 (Q9FY16) Ferredoxin-nitrite reductase precurso... 27 7.3
TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial ... 27 9.5
BP055907 27 9.5
>BP036716
Length = 514
Score = 32.7 bits (73), Expect = 0.13
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -2
Query: 394 ERLAEAEREIHMWKRECQKKDKDYETVMGLLEQE 427
+R+AEAERE + K E ++ K +ET++ L+ +E
Sbjct: 462 DRVAEAEREYNELKAESEQATKTFETIVKLMNEE 361
>TC16890
Length = 965
Score = 30.4 bits (67), Expect = 0.66
Identities = 14/57 (24%), Positives = 31/57 (53%)
Frame = +2
Query: 393 QERLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVIIAKLNERIKEKD 449
++R+ +E+ CQKK+K+Y+ + ++ +R+K +I +L E + E +
Sbjct: 431 RKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEK---NREKVQLITRLMELVSESE 592
>TC18263 similar to GB|AAM55302.1|28624758|AY115841 auxin influx carrier
protein {Medicago truncatula;} , partial (18%)
Length = 528
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 152 NAFESIFTLLI-YGLFLFPNMDNFV-DLNAIKIFLAKNPVPTLLANTYHSIHHRNIREGG 209
NAF ++ ++ +G + +M NF+ ++ +F P L+ + H++HH I
Sbjct: 104 NAFVVVWVTVVGFGFGGWASMTNFIKQVDTFGLFAKCYQCPPKLSASNHTLHH*KIMFFC 283
Query: 210 LIVCCAPLLY 219
L++CC ++
Sbjct: 284 LLLCCLRCIF 313
>TC9012
Length = 598
Score = 25.4 bits (54), Expect(2) = 2.8
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = -1
Query: 123 HFTIKNNLQGLTAKFLYQKASDFVKAKKTNAFESIFTLL 161
+FT NN + F +Q + F K NAF + FTL+
Sbjct: 253 YFTDDNNSN---SSFCFQDRNPFAKTIPCNAFSNNFTLI 146
Score = 21.2 bits (43), Expect(2) = 2.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 65 CHCFTFPDYQLVPTLEEYSFWVG 87
C + FP YQ V EY++ G
Sbjct: 411 CIVYNFPTYQGVLKYIEYNYMSG 343
>TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-like
protein, partial (57%)
Length = 1141
Score = 27.7 bits (60), Expect = 4.3
Identities = 10/34 (29%), Positives = 17/34 (49%)
Frame = -2
Query: 192 LLANTYHSIHHRNIREGGLIVCCAPLLYRWYASH 225
+ N HS HH+ + + ++ CC+ Y W H
Sbjct: 225 IFCNQSHS-HHQKVHQWSMMFCCSQSQYLWAYPH 127
>TC13225
Length = 513
Score = 27.7 bits (60), Expect = 4.3
Identities = 27/108 (25%), Positives = 38/108 (35%)
Frame = +3
Query: 143 SDFVKAKKTNAFESIFTLLIYGLFLFPNMDNFVDLNAIKIFLAKNPVPTLLANTYHSIHH 202
S ++ KK N E LIY + L +F+ +I + + LAN Y
Sbjct: 24 STILEKKKENGEEDAVATLIYTIIL-----HFIGDPSI----FRERASSQLANLY----- 161
Query: 203 RNIREGGLIVCCAPLLYRWYASHLTKSVFSKENSGKASWSERIMPLTP 250
C YRWY V +E+ A W ER + P
Sbjct: 162 ----------CPTMSDYRWYKDTFFSKVTLREDGNSAFWKERFIAGLP 275
>TC15019 UP|Q9FY16 (Q9FY16) Ferredoxin-nitrite reductase precursor ,
complete
Length = 2098
Score = 26.9 bits (58), Expect = 7.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -3
Query: 167 LFPNMDNFVDLNAIKIFLAKNPVPTLLANTYHSIHHRNI-----REGG 209
LF + F+ +NA + +NPVP L ++ HR I R GG
Sbjct: 230 LFLQLHLFLRINATPVLFLQNPVPISLLHSGLQPRHRRIGWSHSRRGG 87
>TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial (51%)
Length = 549
Score = 26.6 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = +1
Query: 14 KKPDLTRLRELASHVTNPRDFRERHGRL 41
++PD RLR L SH R R R G +
Sbjct: 238 RRPDQCRLRHLTSHHRQSRRLRPRPGEI 321
>BP055907
Length = 451
Score = 26.6 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 3/46 (6%)
Frame = -2
Query: 12 TFKKPDLTRLRELA---SHVTNPRDFRERHGRLLDLLKVKVEDGIL 54
TFK +T L L ++ N + +RE G L ++KV+ +DG++
Sbjct: 369 TFKLHPVTELHILCPRRNYTMNKKLYREDGGDLNCIIKVETDDGVI 232
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,754,729
Number of Sequences: 28460
Number of extensions: 131031
Number of successful extensions: 635
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of query: 475
length of database: 4,897,600
effective HSP length: 94
effective length of query: 381
effective length of database: 2,222,360
effective search space: 846719160
effective search space used: 846719160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149496.4