TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149496.4 - phase: 0 
         (475 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP036716                                                               33  0.13
TC16890                                                                30  0.66
TC18263 similar to GB|AAM55302.1|28624758|AY115841 auxin influx ...    30  1.1
TC9012                                                                 25  2.8
TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-l...    28  4.3
TC13225                                                                28  4.3
TC15019 UP|Q9FY16 (Q9FY16) Ferredoxin-nitrite reductase precurso...    27  7.3
TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial ...    27  9.5
BP055907                                                               27  9.5

>BP036716 
          Length = 514

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = -2

Query: 394 ERLAEAEREIHMWKRECQKKDKDYETVMGLLEQE 427
           +R+AEAERE +  K E ++  K +ET++ L+ +E
Sbjct: 462 DRVAEAEREYNELKAESEQATKTFETIVKLMNEE 361


>TC16890 
          Length = 965

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 14/57 (24%), Positives = 31/57 (53%)
 Frame = +2

Query: 393 QERLAEAEREIHMWKRECQKKDKDYETVMGLLEQEAYDSRQKDVIIAKLNERIKEKD 449
           ++R+    +E+      CQKK+K+Y+  +    ++   +R+K  +I +L E + E +
Sbjct: 431 RKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEK---NREKVQLITRLMELVSESE 592


>TC18263 similar to GB|AAM55302.1|28624758|AY115841 auxin influx carrier
           protein {Medicago truncatula;} , partial (18%)
          Length = 528

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 152 NAFESIFTLLI-YGLFLFPNMDNFV-DLNAIKIFLAKNPVPTLLANTYHSIHHRNIREGG 209
           NAF  ++  ++ +G   + +M NF+  ++   +F      P  L+ + H++HH  I    
Sbjct: 104 NAFVVVWVTVVGFGFGGWASMTNFIKQVDTFGLFAKCYQCPPKLSASNHTLHH*KIMFFC 283

Query: 210 LIVCCAPLLY 219
           L++CC   ++
Sbjct: 284 LLLCCLRCIF 313


>TC9012 
          Length = 598

 Score = 25.4 bits (54), Expect(2) = 2.8
 Identities = 14/39 (35%), Positives = 20/39 (50%)
 Frame = -1

Query: 123 HFTIKNNLQGLTAKFLYQKASDFVKAKKTNAFESIFTLL 161
           +FT  NN     + F +Q  + F K    NAF + FTL+
Sbjct: 253 YFTDDNNSN---SSFCFQDRNPFAKTIPCNAFSNNFTLI 146



 Score = 21.2 bits (43), Expect(2) = 2.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 65  CHCFTFPDYQLVPTLEEYSFWVG 87
           C  + FP YQ V    EY++  G
Sbjct: 411 CIVYNFPTYQGVLKYIEYNYMSG 343


>TC14184 similar to UP|Q93WZ6 (Q93WZ6) Abscisic stress ripening-like
           protein, partial (57%)
          Length = 1141

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 10/34 (29%), Positives = 17/34 (49%)
 Frame = -2

Query: 192 LLANTYHSIHHRNIREGGLIVCCAPLLYRWYASH 225
           +  N  HS HH+ + +  ++ CC+   Y W   H
Sbjct: 225 IFCNQSHS-HHQKVHQWSMMFCCSQSQYLWAYPH 127


>TC13225 
          Length = 513

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 27/108 (25%), Positives = 38/108 (35%)
 Frame = +3

Query: 143 SDFVKAKKTNAFESIFTLLIYGLFLFPNMDNFVDLNAIKIFLAKNPVPTLLANTYHSIHH 202
           S  ++ KK N  E     LIY + L     +F+   +I     +    + LAN Y     
Sbjct: 24  STILEKKKENGEEDAVATLIYTIIL-----HFIGDPSI----FRERASSQLANLY----- 161

Query: 203 RNIREGGLIVCCAPLLYRWYASHLTKSVFSKENSGKASWSERIMPLTP 250
                     C     YRWY       V  +E+   A W ER +   P
Sbjct: 162 ----------CPTMSDYRWYKDTFFSKVTLREDGNSAFWKERFIAGLP 275


>TC15019 UP|Q9FY16 (Q9FY16) Ferredoxin-nitrite reductase precursor  ,
           complete
          Length = 2098

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -3

Query: 167 LFPNMDNFVDLNAIKIFLAKNPVPTLLANTYHSIHHRNI-----REGG 209
           LF  +  F+ +NA  +   +NPVP  L ++     HR I     R GG
Sbjct: 230 LFLQLHLFLRINATPVLFLQNPVPISLLHSGLQPRHRRIGWSHSRRGG 87


>TC9483 similar to UP|Q9FK50 (Q9FK50) Brn1-like protein, partial (51%)
          Length = 549

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 15/28 (52%)
 Frame = +1

Query: 14  KKPDLTRLRELASHVTNPRDFRERHGRL 41
           ++PD  RLR L SH    R  R R G +
Sbjct: 238 RRPDQCRLRHLTSHHRQSRRLRPRPGEI 321


>BP055907 
          Length = 451

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 3/46 (6%)
 Frame = -2

Query: 12  TFKKPDLTRLRELA---SHVTNPRDFRERHGRLLDLLKVKVEDGIL 54
           TFK   +T L  L    ++  N + +RE  G L  ++KV+ +DG++
Sbjct: 369 TFKLHPVTELHILCPRRNYTMNKKLYREDGGDLNCIIKVETDDGVI 232


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,754,729
Number of Sequences: 28460
Number of extensions: 131031
Number of successful extensions: 635
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of query: 475
length of database: 4,897,600
effective HSP length: 94
effective length of query: 381
effective length of database: 2,222,360
effective search space: 846719160
effective search space used: 846719160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)