Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149495.3 + phase: 0 
         (412 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV414925                                                               91  4e-19
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo...    82  2e-16
BP051299                                                               70  5e-13
BG662160                                                               64  5e-11
AW428730                                                               62  1e-10
TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (...    60  7e-10
TC19187                                                                56  1e-08
BI419994                                                               54  5e-08
BP052653                                                               53  8e-08
TC9055                                                                 50  5e-07
AI967342                                                               40  2e-06
CB826914                                                               49  2e-06
TC13380                                                                45  2e-05
TC12990                                                                44  5e-05
BP049904                                                               44  6e-05
AV413010                                                               43  8e-05
AV768566                                                               42  1e-04
BP076687                                                               42  2e-04
AW720409                                                               42  2e-04
BP072280                                                               42  2e-04

>AV414925 
          Length = 414

 Score = 90.9 bits (224), Expect = 4e-19
 Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
 Frame = +1

Query: 1   MASDRLPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHRKNSLNR------S 54
           + ++ +P + +A+I SRLPV SLLRFRS SKS +S+IDS +F+ LH  NSL        +
Sbjct: 82  LMAEEIPVEVIADILSRLPVTSLLRFRSISKSWRSLIDSKHFMKLHLNNSLTNPNPNLTN 261

Query: 55  FILRLRSNIYQIEDDFSNLTTAVPLNHPFTRNSTNIALIGSCNGLLAVSN 104
            ILR  +++Y+   DF ++  AV LNHP    S  I ++GSC+GLL + N
Sbjct: 262 LILRHNTDLYRA--DFPSIGAAVNLNHPLMCYSNRINILGSCHGLLCICN 405


>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5, TAC
           clone:K14B20, partial (7%)
          Length = 782

 Score = 82.0 bits (201), Expect = 2e-16
 Identities = 72/249 (28%), Positives = 118/249 (46%), Gaps = 12/249 (4%)
 Frame = +3

Query: 6   LPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHRKNSLN-RSFILRLRSNIY 64
           LP + + EI S LPVKSLL+FR  SK+ KS I    F+ LH  + L+ R+      S + 
Sbjct: 48  LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHLLHRLSFRNADFEHTSLLI 227

Query: 65  QIE-DDF-----SNLTTAVPLNHPFTRNSTNIAL-----IGSCNGLLAVSNGEIALRHPN 113
           +   DDF     S+ T +  L  P    ++   +     IG+CNGL+++        + N
Sbjct: 228 KCHTDDFGRPYISSRTVSSLLESPSAIVASRSCISGYDFIGTCNGLVSLRKLNYDESNTN 407

Query: 114 AANEITIWNPNIRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLTGDYKILRLSWLV 173
             +++  WNP  R            +P S S  N  L   GFG+D  +  YK++ +   +
Sbjct: 408 NFSQVRFWNPATRTMS-------QDSPPSWSPRNLHL---GFGYDCSSDTYKVVGMIPGL 557

Query: 174 SLQNPFYDPHVRLFSLKTNSWKIIPTMPYALVFAQTMGVLVEDSIHWIMAKKLDGLHPSL 233
           ++        V ++++  N W+ I   P+A +  Q   V V ++++W     L G +P  
Sbjct: 558 TM--------VNVYNMGDNCWRTIQISPHAPMHLQGSAVYVSNTLNW-----LAGTNPYF 698

Query: 234 IVAFNLTLE 242
           IV+F+L  E
Sbjct: 699 IVSFDLEKE 725


>BP051299 
          Length = 539

 Score = 70.5 bits (171), Expect = 5e-13
 Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 8/192 (4%)
 Frame = +2

Query: 6   LPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHRKNSLNRSFILRLRSN--- 62
           LP +  AEI  RLP K+L++  S  KS +S+I S +FI+LHR +S + S +L+L      
Sbjct: 5   LPQEIWAEILHRLPPKTLVKCTSVCKSWRSLITSTSFISLHRNHSPS-SLLLQLCDERAI 181

Query: 63  ----IYQIEDDFSNLTTAVPLNHPFTRNSTNIALIGSCNGLLAVSNGEIALRHPNAANEI 118
                Y +  D   L+ +  L  P + N    +++G C+GL+ +++ E          ++
Sbjct: 182 PNFIHYSLRRDDPFLSESSSLRLPSSFN-REFSVVGICHGLVCITSTE-------NCRDL 337

Query: 119 TIWNPNIRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLTGDYKILRLSWLVSLQN- 177
            I NP++R H     + LP     PS  + S+    FGFD    DYK++R++ +   +  
Sbjct: 338 IICNPSLRLH-----ITLPEPSDYPSLHSASV---AFGFDSRNNDYKVIRIACMHDDERY 493

Query: 178 PFYDPHVRLFSL 189
               P V ++SL
Sbjct: 494 GVSSPEVEVYSL 529


>BG662160 
          Length = 445

 Score = 63.9 bits (154), Expect = 5e-11
 Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
 Frame = +2

Query: 6   LPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFI--NLHRKNSLNRSF-ILRLRSN 62
           LP +   EI S LPVKSL+RFR  SKS KSII    FI  +LHR +S  R+     L+S 
Sbjct: 23  LPEELRLEILSWLPVKSLVRFRCVSKSWKSIISDSQFIKLHLHRSSSTTRNTDFAYLQSL 202

Query: 63  IYQIEDDFSNLTTAVPLNHPFTRNSTNIALIGSCNGLLAVSNGEIALRHPNAANEITIWN 122
           I       S  T A+P ++ F          G+CNGL+ + + +   R     + + +WN
Sbjct: 203 ITSPRKSRSASTIAIPDDYDF---------CGTCNGLVCLHSSKYD-RKDKYTSHVRLWN 352

Query: 123 PNIRK-HHIIPFLPLPI 138
           P +R      P L LPI
Sbjct: 353 PAMRSMSQRSPPLYLPI 403


>AW428730 
          Length = 405

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
 Frame = +3

Query: 141 RSPSDMNCSLCVHGFGFDPLTGDYKILRLSWLVSLQNPFYDPHVRLFSLKTNSWKIIP-- 198
           R   D N    + GFG+D  T DY ++R+  +     P + P V+ FSL+ N WK     
Sbjct: 6   RHEVDTNVFSHLFGFGYDSSTDDYLVVRVP-VTDCYQPTHLPDVQFFSLRANMWKYTEGV 182

Query: 199 TMPYALVFAQTMGVLVEDSIHWIMAKKLDGLHPSLIVAFNLTLEIFNEVPLP 250
            +P         G+L  ++IHW ++  +DG+    I+AF+L  +   E+P+P
Sbjct: 183 DLPPLTTIDLCHGLLFNEAIHWAVSNWVDGVTNMFIIAFDLMEKRLLEIPMP 338


>TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (SLF)-S4
           protein, partial (10%)
          Length = 551

 Score = 60.1 bits (144), Expect = 7e-10
 Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 2/236 (0%)
 Frame = +3

Query: 6   LPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHRKNSLN-RSFILRLRSNIY 64
           LP + + EI S LPVKSLL+FR  SK+ KS I    F+ LH  + L+ R+      S + 
Sbjct: 21  LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHLLHRLSFRNADFEHTSLLI 200

Query: 65  QIE-DDFSNLTTAVPLNHPFTRNSTNIALIGSCNGLLAVSNGEIALRHPNAANEITIWNP 123
           +   DDF           P+  + T                             +  WNP
Sbjct: 201 KCHTDDF---------GRPYISSRT-----------------------------VRFWNP 266

Query: 124 NIRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLTGDYKILRLSWLVSLQNPFYDPH 183
             R            +P S S  N  L   GFG+D  +  YK++ +   +++        
Sbjct: 267 ATRTMS-------QDSPPSWSPRNLHL---GFGYDCSSDTYKVVGMIPGLTM-------- 392

Query: 184 VRLFSLKTNSWKIIPTMPYALVFAQTMGVLVEDSIHWIMAKKLDGLHPSLIVAFNL 239
           V ++++  N W+ I   P+A +  Q   V V ++++W     L G +P  IV+F+L
Sbjct: 393 VNVYNMGDNCWRTIQISPHAPMHLQGSAVYVSNTLNW-----LAGTNPYFIVSFDL 545


>TC19187 
          Length = 632

 Score = 56.2 bits (134), Expect = 1e-08
 Identities = 30/96 (31%), Positives = 53/96 (54%)
 Frame = +1

Query: 211 GVLVEDSIHWIMAKKLDGLHPSLIVAFNLTLEIFNEVPLPDEIGEEEVNSNDSVEIDVAA 270
           G  V  +++W     +      +IV+ +L  E + E+ LP +  +EE ++       ++ 
Sbjct: 7   GKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEI-LPPDYEKEECSTPT-----LSV 168

Query: 271 LGGCLCMTVNYETTKIDVWVMKQYGLKDSWCKLFTM 306
           L GCLCM  +++ T   VW+MK YG+++SW KL T+
Sbjct: 169 LKGCLCMNYDHKRTDFVVWMMKDYGVRESWVKLVTI 276


>BI419994 
          Length = 549

 Score = 53.9 bits (128), Expect = 5e-08
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
 Frame = +2

Query: 6   LPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLH--------RKNSLNRS--F 55
           LP + + +I  RLPV+SLLRF++  KS + +I    F   H         +  LN +  F
Sbjct: 47  LPDELILQILLRLPVRSLLRFKTVCKSWRYLISDPQFTKSHFNLAASPTHRIFLNNTNGF 226

Query: 56  ILRLRSNIYQIEDDFSNLTTAVPL------NHPFTRNSTNIALIGSCNGLLAVSNGEIAL 109
            +        + D+ S +    PL      NH F  + T + ++GSC G + ++N +   
Sbjct: 227 *IESLDTDSSLHDESSLVHLKFPLAPPHPDNHRFGSSVTGLKVLGSCRGFVLLANHQ--- 397

Query: 110 RHPNAANEITIWNPNIRKHHIIPFLPLPITPRSPSDMNCSLCVHGFGFDPLTGDYKIL 167
                   + +WNP+      +P     +  +      C   ++G G+D    DY ++
Sbjct: 398 ------GNVVVWNPSTGVRRRVPEWCSYLASQ------CEF-LYGIGYDESNDDYLVV 532


>BP052653 
          Length = 552

 Score = 53.1 bits (126), Expect = 8e-08
 Identities = 41/128 (32%), Positives = 64/128 (49%), Gaps = 6/128 (4%)
 Frame = +1

Query: 3   SDRLPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHRKNSLNRSFILRLRSN 62
           S  LP D + +I  RLPV+SLLRF+S  KS  S+I    F   H   +   +    ++ N
Sbjct: 178 SSILPHDLIVQILLRLPVRSLLRFKSVCKSWLSLISDPQFGKSHFDLAAAPTHRCLVKIN 357

Query: 63  IYQIED---DFSNL--TTAVPLNHPFTRNST-NIALIGSCNGLLAVSNGEIALRHPNAAN 116
            +++E    D S L  ++ V L  P+T     +I ++GSC G +A+  G  A+       
Sbjct: 358 NFKLESLDVDASVLDQSSEVNLKFPYTGYVIFHIQILGSCRGFIALVRGGDAI------- 516

Query: 117 EITIWNPN 124
              +WNP+
Sbjct: 517 ---VWNPS 531


>TC9055 
          Length = 577

 Score = 50.4 bits (119), Expect = 5e-07
 Identities = 42/163 (25%), Positives = 71/163 (42%), Gaps = 3/163 (1%)
 Frame = +2

Query: 218 IHWIMAKKLDGLHPSLIVAFNLTLEIFNEVPLPDEIGEEEVNSNDSVEIDVAALGGCLCM 277
           ++W+ A K +     +IV+ ++  E +  + LP   G  E+ S      ++  LG CLC+
Sbjct: 8   VNWL-ANKFEPFEQLVIVSLDMRQEAYRLLSLPQ--GTSELPS-----AEIQVLGNCLCL 163

Query: 278 TVNYETTKIDVWVMKQYGLKDSWCKLFTMMKSCVTSHLKSSSPLCYSSDGSKVLIEGIEV 337
             +++ T    W M +YGL +SW  L T+       HL+       +     +  +G   
Sbjct: 164 FYDFKRTHFVAWKMSEYGLPESWTPLLTIS----YEHLRWDHRFYLNQWLICLCGDGHIF 331

Query: 338 LLEVHHKKLFWYDLKTEQVSYEEIPD---FNGAKICVGSLVPP 377
           +L    K +  Y+L    V Y E+     +  A   V SLV P
Sbjct: 332 MLAKKQKLVIIYNLSDNSVKYVELASNKLWLDANDYVESLVSP 460


>AI967342 
          Length = 450

 Score = 40.4 bits (93), Expect(2) = 2e-06
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = -3

Query: 173 VSLQNPFYDPHVRLFSLKTNSWKIIPTMPYALVFAQT---MGVLVEDSIHWIMAKKLDGL 229
           +   +P +  H   FS KTNSW  I    +      T    G+L+  ++HW++       
Sbjct: 430 IRADSPDFVTHNETFSFKTNSWDQIEGFKFPKFACGTRIEAGLLLNGALHWLVY----DA 263

Query: 230 HPSLIVAFNLTLEIFNEVPLPDEIGEEEVNSNDS 263
              +I+AF+L      E+PLP  I  E++  + S
Sbjct: 262 DNFVIIAFDLIGRSLFEIPLPYGIHTEDIEGSSS 161



 Score = 27.7 bits (60), Expect(2) = 2e-06
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = -1

Query: 263 SVEIDVAALGGCLCMTV--NYETTKIDVWVMKQY-----GLKDSWCKLFTM 306
           S E+ +  +G CLC+    + +    ++W+MK+Y     GL   +C +  +
Sbjct: 177 SKEVHLRVMGDCLCLCNPNSSDRAMAEIWMMKEYKGTHLGLSHLFCPIMIL 25


>CB826914 
          Length = 575

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 37/133 (27%), Positives = 62/133 (45%), Gaps = 9/133 (6%)
 Frame = +1

Query: 9   DTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLH-RKNSLNRSFILRLRSNIYQIE 67
           D + EI   LPVKS++RF++  K  +S+I    F +LH ++ + +  F          +E
Sbjct: 175 DLIIEILLMLPVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLE 354

Query: 68  DDFSNLTTAVPLNHPFTRNSTN-------IALIGSCNGLLAVS-NGEIALRHPNAANEIT 119
               +   + P+N  F  N  +       I++ GSC G L ++    I   HP   + + 
Sbjct: 355 GPLQSHRVSQPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWISNIGYGHP-WNDSLY 531

Query: 120 IWNPNIRKHHIIP 132
           +WNP+   H  IP
Sbjct: 532 LWNPSTHVHKPIP 570


>TC13380 
          Length = 593

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 33/125 (26%), Positives = 59/125 (46%), Gaps = 4/125 (3%)
 Frame = +1

Query: 217 SIHWIMAKKLDGLHPSLIVAFNLTLEIFNEVPLP--DEI--GEEEVNSNDSVEIDVAALG 272
           +IHW+    + G     I+AF+L  +   E+P P  D++    +++     +   +   G
Sbjct: 1   AIHWVAQNFVAGRVTHFIIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWVHG 180

Query: 273 GCLCMTVNYETTKIDVWVMKQYGLKDSWCKLFTMMKSCVTSHLKSSSPLCYSSDGSKVLI 332
               +T   + T I++WVMK+Y ++ SW K   ++ S      K   PLC +  G  V+ 
Sbjct: 181 RFFSLTAFQQDT-IEIWVMKKYKVQSSWTKTLVVLSS------KLLYPLCSTKGGDIVMC 339

Query: 333 EGIEV 337
            GI +
Sbjct: 340 SGINL 354


>TC12990 
          Length = 518

 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 23/62 (37%), Positives = 36/62 (57%), Gaps = 1/62 (1%)
 Frame = +1

Query: 271 LGGCLCMTVNY-ETTKIDVWVMKQYGLKDSWCKLFTMMKSCVTSHLKSSSPLCYSSDGSK 329
           LGGCLC++ N  ET    VW MK++G+ +SW +LF ++      H    + +C S +G  
Sbjct: 7   LGGCLCISQNNKETHSFVVWQMKEFGVHESWTQLFNIIVHERILHTPCFA-MCMSENGDA 183

Query: 330 VL 331
           +L
Sbjct: 184 LL 189


>BP049904 
          Length = 541

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
 Frame = -3

Query: 240 TLEIFNEVPLPDEIGEEEVNSNDSVEIDVAALG---GCLCMTVNYETTKIDVWVMKQYGL 296
           T  IF+ + L  E  EE +  +  +E+D   L     CLC+  N      D+WVMK+YG 
Sbjct: 530 TAGIFS-LDLGKETYEEFLQPDYGIEVDYKILDVTRDCLCILANS-----DIWVMKEYGN 369

Query: 297 KDSWCKLFTMMKSCVTS------HLKSSSPLCYSSDGSKVLIEGIEVLLEVHHK 344
            +SW KLF+   + ++         K    LC   +   ++  G   +    HK
Sbjct: 368 SESWTKLFSFSSNFLSRLPLDWYQFKKHHLLCVLENDESLVYPGCRNVYVYSHK 207


>AV413010 
          Length = 416

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 16/110 (14%)
 Frame = +3

Query: 3   SDRLPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLHRKNSLNRSFILRLRSN 62
           S  LP + + +I  +LPV SLLRF+S SKS  S I +  F   H   + + +  L L+S 
Sbjct: 87  SSILPDELIIQILLQLPVTSLLRFKSVSKSWFSQISNPQFAKSHFNLAASPTHYLFLKST 266

Query: 63  ---IYQIEDDFSN--LTTAVPLNHP-----------FTRNSTNIALIGSC 96
               +Q  D  S+   TTAV LN+P           F  + T++ ++GSC
Sbjct: 267 DEFQFQTLDIESSPPFTTAV-LNYPHEQPRSGSNSIFCPSITDLEVLGSC 413


>AV768566 
          Length = 201

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -1

Query: 361 IPDFNGAKICVGSLVPPSFPVDNSSKKENHTCKS--KKRYL 399
           +P+ N   ICVGSLVPPS PV+N  ++    C++  K RYL
Sbjct: 201 MPNLNEGMICVGSLVPPSLPVENCRRQRKLGCENARKTRYL 79


>BP076687 
          Length = 389

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
 Frame = -3

Query: 6   LPPDTLAEIFSRLPVKSLLRFRSTSKSLKSIIDSHNFINLH---RKNSLNRSFILRLRSN 62
           LP + + +I  RLPV+SLLRF+S  KS  S+I    F   H     +   R   +   S 
Sbjct: 381 LPEELIPQILLRLPVRSLLRFKSVCKSWLSLISDPKFGKSHYDLAASPTYRCLTIANDSE 202

Query: 63  IYQIEDDFSNL---TTAVPLNHPFTR-------NSTNIALIGSCNGLLAVSNGEIALRHP 112
           I  I+ D   L   ++ V L +P          +   +  +G C G + V   +      
Sbjct: 201 IGSIDVDAPLLNYESSVVKLKYPLPPPCKLSLFSGNTVWFLGYCRGFVIVVYEQ------ 40

Query: 113 NAANEITIWNPNIRKH 128
               ++ +WNP+   H
Sbjct: 39  ---GDVFLWNPSTGVH 1


>AW720409 
          Length = 575

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 37/116 (31%), Positives = 50/116 (42%), Gaps = 19/116 (16%)
 Frame = +3

Query: 6   LPPDTLAEIFSRLPVKSLLRFRSTSKSLKSII-DSHNFINLH--RKNSLNRSFILRLRSN 62
           LP +   EI S LPVK+L+RF   SKS KS+I    +F  LH  R    N   IL L+  
Sbjct: 93  LPFELWIEILSWLPVKTLMRFSCVSKSWKSLIYQDRDFKKLHLDRSPKNNNQVILTLQKP 272

Query: 63  IY---------------QIEDDFSNLTTAVPLNHPFTRNSTNI-ALIGSCNGLLAV 102
           ++                 E   S++   +P          N    IGSCNGL+ +
Sbjct: 273 LFSGRTFFPFPVRRLLQDQEPSSSSIIDDIPFEEEDEDEEDNYHDTIGSCNGLVCL 440


>BP072280 
          Length = 431

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 42/73 (56%), Gaps = 3/73 (4%)
 Frame = +1

Query: 184 VRLFSLKTNSWKIIPTM--PYALVFAQT-MGVLVEDSIHWIMAKKLDGLHPSLIVAFNLT 240
           + +FSLKT SW+ I  +  PY      T  G+L+  ++HW++  +   +H  +I+AF++ 
Sbjct: 181 IAIFSLKTKSWEQIKRVKFPYRSCHPITDAGLLLNGALHWLVYSR--DVHGVVIIAFDMI 354

Query: 241 LEIFNEVPLPDEI 253
            +   E+PLP  I
Sbjct: 355 EKSLLEIPLPSGI 393


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,652,603
Number of Sequences: 28460
Number of extensions: 136856
Number of successful extensions: 765
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of query: 412
length of database: 4,897,600
effective HSP length: 92
effective length of query: 320
effective length of database: 2,279,280
effective search space: 729369600
effective search space used: 729369600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)


Medicago: description of AC149495.3