BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149494.9 + phase: 0
(441 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV416576 148 2e-36
AV768808 124 3e-29
AV406990 109 8e-25
AV417757 76 1e-14
AV424056 68 3e-12
AV427942 65 2e-11
AV779982 50 1e-06
TC12717 similar to UP|Q93ZH7 (Q93ZH7) AT5g03040/F15A17_70, parti... 49 2e-06
BP050651 49 2e-06
TC18405 46 1e-05
TC17900 similar to UP|BAD10560 (BAD10560) Calmodulin-binding pro... 35 0.019
AV418628 35 0.025
BP041245 33 0.12
BP043442 32 0.16
AV420698 32 0.21
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin... 32 0.21
AV406431 32 0.27
TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%) 31 0.36
AU088998 31 0.46
BF177722 31 0.46
>AV416576
Length = 424
Score = 148 bits (373), Expect = 2e-36
Identities = 82/126 (65%), Positives = 94/126 (74%), Gaps = 11/126 (8%)
Frame = +1
Query: 282 LNKNENNVNSMSNESPSKHSTKAQNQSLS----------VKFHKAKEEVAASRTADNSPQ 331
L+ + NN N ++ ESPSK STKA NQSLS ++FHK +EE AASRTADNSPQ
Sbjct: 58 LSSDYNNDNFIAYESPSKRSTKAPNQSLSSREALPPLNSLRFHKGREE-AASRTADNSPQ 234
Query: 332 -TFSASSRNGSGVRRNTPFTPTRSECSWSFLGGYSGYPNYMANTESSRAKVRSQSAPRQR 390
FSASSR+G+ R PFTPTRSECSW F GYSG+PNYM+NTES RAK+RSQSAPRQR
Sbjct: 235 LAFSASSRSGA---RRGPFTPTRSECSWGFFSGYSGHPNYMSNTESYRAKIRSQSAPRQR 405
Query: 391 HEFEEY 396
EFE Y
Sbjct: 406 VEFERY 423
>AV768808
Length = 537
Score = 124 bits (311), Expect = 3e-29
Identities = 71/108 (65%), Positives = 80/108 (73%), Gaps = 4/108 (3%)
Frame = -1
Query: 338 RNGSGVRRNTPFTPTRSECSWSFLGGYSGYPNYMANTESSRAKVRSQSAPRQRHEFEEY- 396
R GS RR PFTPT+SECS+SF GY+G+PNYMANTESS+AKVRSQSAPRQR EFE Y
Sbjct: 537 RLGSSARRG-PFTPTKSECSFSFFSGYAGHPNYMANTESSKAKVRSQSAPRQRLEFERYG 361
Query: 397 -SSTRRPF-QGLWDVGSTNSDNDSDSRSNKVS-PALSRFNRIGSSNLR 441
++TRR QGLW+ G NSD DSD R S S FNRIGS+NLR
Sbjct: 360 GATTRRSLVQGLWEAG-PNSDRDSDFRIKGYSVSTTSSFNRIGSTNLR 220
>AV406990
Length = 392
Score = 109 bits (273), Expect = 8e-25
Identities = 68/107 (63%), Positives = 74/107 (68%), Gaps = 11/107 (10%)
Frame = +3
Query: 1 MGFLRRLFGAKKPIPP---SDGSGKKSD-KDNKRRWSFGKQSSKTKSLPQPPPSAFNQFD 56
MGF RRLFG KK PP SDGSG KS KD +R WSF K S++ S + +QFD
Sbjct: 33 MGFFRRLFGGKKHPPPPALSDGSGSKSGPKDRRRSWSFAKNSTRGTSSNKSLSPLNHQFD 212
Query: 57 SSTP-------LERNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS 96
SST L+ NKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS
Sbjct: 213 SSTSSSPFTDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTS 353
>AV417757
Length = 253
Score = 75.9 bits (185), Expect = 1e-14
Identities = 37/64 (57%), Positives = 52/64 (80%)
Frame = +1
Query: 112 LPEETAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKKTADMLRRMQTLVRLQT 171
+ +E AA++IQ+ FRG+LARRALRAL+A+V+LQA+ RG +VRK+ A LR MQ LVR+Q
Sbjct: 10 IKQEWAAIRIQTLFRGFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQA 189
Query: 172 KARA 175
+ +A
Sbjct: 190 RVKA 201
>AV424056
Length = 193
Score = 68.2 bits (165), Expect = 3e-12
Identities = 45/69 (65%), Positives = 50/69 (72%)
Frame = +1
Query: 70 VAAATAAVAEAALAAAHAAAEVVRLTSSGVAGSSNKTRGQLRLPEETAAVKIQSAFRGYL 129
VAAATAA A+AA+AAA AAA VVRLTS G + G RL AAVKIQ+ FRGYL
Sbjct: 1 VAAATAAAADAAVAAAQAAAAVVRLTSHG--RDTMFGGGHQRL----AAVKIQTVFRGYL 162
Query: 130 ARRALRALK 138
AR+ALRALK
Sbjct: 163 ARKALRALK 189
Score = 26.6 bits (57), Expect = 8.8
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = -3
Query: 47 PPPSAFNQFDSSTPLERNKHAIAVAAATAAVAEAALAAA 85
PPP N + R A A AAATAA A AA+AAA
Sbjct: 110 PPP---NMVSLPWLVSRTTAAAA*AAATAASAAAAVAAA 3
>AV427942
Length = 140
Score = 65.5 bits (158), Expect = 2e-11
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +2
Query: 195 YPVPEEYEQPHHVYSTKFGGSSILKRCSSNSNFRKIESEKPRFGSN 240
YP PEEYE P Y T SSILKRCSSN+NFR I S++ RFG+N
Sbjct: 2 YPAPEEYEHPLRAYGTNLDRSSILKRCSSNANFRNINSDRTRFGTN 139
>AV779982
Length = 516
Score = 49.7 bits (117), Expect = 1e-06
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +2
Query: 128 YLARRALRALKALVKLQALVRGHIVRKKTADMLRRMQTLVRLQTKA 173
YLARRA RALK +++ QAL+RGH+VR++ L M +V+LQ A
Sbjct: 377 YLARRAFRALKGIIRSQALMRGHLVRRQAVSTLCCMYGMVKLQALA 514
>TC12717 similar to UP|Q93ZH7 (Q93ZH7) AT5g03040/F15A17_70, partial (20%)
Length = 390
Score = 48.5 bits (114), Expect = 2e-06
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +3
Query: 74 TAAVAEAALAAAHAAAEVVRLTSSGVAGSSNKTRGQLRLPEETAAVKIQSAFRGYLARRA 133
T+A E + AA VVR+ + A + K + +E AA+KIQ+AFRG+LARRA
Sbjct: 12 TSAAPEEPAPSVQAA--VVRIGAGTNAQFAGKPK------DEVAAIKIQTAFRGHLARRA 167
Query: 134 LRALKALVKLQ 144
LRAL+ LV+ +
Sbjct: 168 LRALRGLVRFE 200
>BP050651
Length = 553
Score = 48.5 bits (114), Expect = 2e-06
Identities = 26/34 (76%), Positives = 27/34 (78%), Gaps = 1/34 (2%)
Frame = -3
Query: 370 YMANTESSRAKVRSQSAPRQRHE-FEEYSSTRRP 402
YMANTESSRAKVRS SAPRQR + FE S RRP
Sbjct: 551 YMANTESSRAKVRSHSAPRQRPDSFERQPSRRRP 450
>TC18405
Length = 542
Score = 46.2 bits (108), Expect = 1e-05
Identities = 30/80 (37%), Positives = 45/80 (55%), Gaps = 2/80 (2%)
Frame = +2
Query: 78 AEAALAAAHAAAEVVRLTSSGVAGSSNK--TRGQLRLPEETAAVKIQSAFRGYLARRALR 135
A+ ALA A+A + + +G T L E AA++IQ+AFR Y AR+ALR
Sbjct: 266 AKGALAPEKASALKLSDYTGKESGDLENGITNENLVSVETIAAIRIQTAFRAYKARKALR 445
Query: 136 ALKALVKLQALVRGHIVRKK 155
LK KL+ ++G+ V+K+
Sbjct: 446 RLKRFTKLKVQIQGYSVKKQ 505
>TC17900 similar to UP|BAD10560 (BAD10560) Calmodulin-binding protein
family-like, partial (4%)
Length = 629
Score = 35.4 bits (80), Expect = 0.019
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +2
Query: 368 PNYMANTESSRAKVRSQSAPRQRHEFEEYSSTRRPFQGLWDVGSTNSDNDSDSRSNKVSP 427
P+YMA TES++AK+R+Q +PR FE+ S R G + S ++D+ S S
Sbjct: 5 PSYMAATESAKAKLRAQDSPR----FEQDVSERNSPAGRHSIPS-STDHPISSHSPGTRR 169
Query: 428 ALSRFNRIGSSNLR 441
++ R G N R
Sbjct: 170 SVPTDGRGGHRNER 211
>AV418628
Length = 309
Score = 35.0 bits (79), Expect = 0.025
Identities = 34/83 (40%), Positives = 37/83 (43%)
Frame = +3
Query: 57 SSTPLERNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGVAGSSNKTRGQLRLPEET 116
SS P R A A A AA AAL AA AAA L SS +A +TR + T
Sbjct: 78 SSAPARRR--AAARRARRAATRTAALTAAAAAATATALASSALA--RRRTRARTAAAVAT 245
Query: 117 AAVKIQSAFRGYLARRALRALKA 139
A SA LARR RA A
Sbjct: 246 ATALASSA----LARRRTRARTA 302
Score = 32.0 bits (71), Expect = 0.21
Identities = 32/94 (34%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Frame = +3
Query: 72 AATAAVAEAALAAAHAAAEVVRLTSSGVAGSSNKTRGQLRLPEETAAVKIQSA------- 124
A AA AAL AA AAA L SS A R R TAA+ +A
Sbjct: 6 ARRAATRTAALTAAAAAATATALASSAPARRRAAARRARRAATRTAALTAAAAAATATAL 185
Query: 125 FRGYLARRALRA--LKALVKLQALVRGHIVRKKT 156
LARR RA A+ AL + R++T
Sbjct: 186 ASSALARRRTRARTAAAVATATALASSALARRRT 287
>BP041245
Length = 516
Score = 32.7 bits (73), Expect = 0.12
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = +3
Query: 28 NKRRWSFGKQSSKTKSLPQPPPSAFN 53
N RRW+ KQ SK L Q PP A N
Sbjct: 132 NSRRWNLAKQQSKQHRLSQVPPMAIN 209
>BP043442
Length = 564
Score = 32.3 bits (72), Expect = 0.16
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -1
Query: 368 PNYMANTESSRAKVRSQSAPRQRHEFEEYSSTRR 401
P+YMA TES++A++R Q +PR + + +S R
Sbjct: 558 PSYMAPTESAKARLRGQGSPRFATDLADKNSMTR 457
>AV420698
Length = 250
Score = 32.0 bits (71), Expect = 0.21
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +3
Query: 198 PEEYEQPHHVYSTKFGGSSILKRCSSNSNFRKIESEKPRFGSNWLDHWMQENSISQTKNA 257
PE++E P S K+ S LKR S S R I + + G D+ + E S + K +
Sbjct: 9 PEKFESPISSESVKYSQSPALKRNISKSCGR-INGNQEKCGGTRSDNRVDEQSWTHRK-S 182
Query: 258 SSKNRHPDEHKSDKILEVDTWK 279
+ D+ S +IL++D+ K
Sbjct: 183 WMRTCSMDDETSFRILDIDSGK 248
>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
(At5g24020), partial (45%)
Length = 470
Score = 32.0 bits (71), Expect = 0.21
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 15/148 (10%)
Frame = +3
Query: 11 KKPIPPSDGSGKKSDKDNKRRWSFGKQSSKTKSLPQPP-------PSAFNQFDSSTPLER 63
++P P +G+ ++ R W PQPP P++ ++ STP+
Sbjct: 12 EQPKPSFNGTASRNSPAKPRAWWSSPPVKAASERPQPPPTWASPSPASASRSSPSTPMSA 191
Query: 64 NKHAIAVAAATAAVAEAALAAAHAAAEVVR---LTSSG-VAGSSNKTRGQLRLP----EE 115
+ + + + A +L + A A R +TS+G ++ SS + +LP +
Sbjct: 192 CATSTSSSVSRIASTTPSLRFSTAIAASTRHSCVTSAGPISSSSASPSPRSKLPMGFGGK 371
Query: 116 TAAVKIQSAFRGYLARRALRALKALVKL 143
+++ RG A R +L AL+ L
Sbjct: 372 ALTWLVEALKRGLRAHRISSSLTALLGL 455
>AV406431
Length = 416
Score = 31.6 bits (70), Expect = 0.27
Identities = 13/17 (76%), Positives = 17/17 (99%)
Frame = +3
Query: 374 TESSRAKVRSQSAPRQR 390
TES++A++RSQSAPRQR
Sbjct: 6 TESAKARIRSQSAPRQR 56
>TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%)
Length = 1073
Score = 31.2 bits (69), Expect = 0.36
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 44 LPQPPPSAFNQFDSSTPLERNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGVAGSS 103
LP+P S + S+ L R A A +A+AA AAA A + +SS + S
Sbjct: 175 LPEPTSSRSPRTKSTASLRRRMRAATPTTTAAKLADAASAAASAGSSASSSSSSSSSASP 354
Query: 104 NKTRGQLRLPE 114
+ +P+
Sbjct: 355 PASSTSFSVPK 387
>AU088998
Length = 564
Score = 30.8 bits (68), Expect = 0.46
Identities = 20/74 (27%), Positives = 37/74 (49%), Gaps = 1/74 (1%)
Frame = +1
Query: 218 LKRCSSNSNFRKIESEK-PRFGSNWLDHWMQENSISQTKNASSKNRHPDEHKSDKILEVD 276
L+ + NS+F + + PR SNW+ E ASS + P+++K +K++
Sbjct: 172 LRLDAENSHFGVWQKQAGPRSESNWIMMVELERKNKNDHRASSDSELPEKNKQEKVI--- 342
Query: 277 TWKPQLNKNENNVN 290
KP+ + N N ++
Sbjct: 343 --KPEESTNNNGMD 378
>BF177722
Length = 399
Score = 30.8 bits (68), Expect = 0.46
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 8 FGAKKPIPPSDGSGKK-SDKDNKRRWSFGKQSSKTKSLPQPPPSAFNQFDSSTPLERNKH 66
F A +P PPS G++ S + W+ ++ +L +PP + + + R K
Sbjct: 107 FPATRPSPPSSSGGRRDSPPMSSPAWTLVPVGRRSATLKRPPATTTSPANLDNSYLRQKL 286
Query: 67 AIAVAAATAA 76
+ AAA AA
Sbjct: 287 SAFAAAAAAA 316
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.123 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,102,204
Number of Sequences: 28460
Number of extensions: 102366
Number of successful extensions: 817
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of query: 441
length of database: 4,897,600
effective HSP length: 93
effective length of query: 348
effective length of database: 2,250,820
effective search space: 783285360
effective search space used: 783285360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149494.9