Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149494.2 - phase: 0 
         (268 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9588                                                                138  1e-33
TC12466 similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, partial (18%)   130  2e-31
TC16345 weakly similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, par...    70  5e-13
TC8720 weakly similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, part...    68  1e-12
AV772355                                                               57  4e-09
AV426390                                                               31  0.19
AV415704                                                               30  0.33
AV419178                                                               30  0.56
TC19839 weakly similar to UP|Q8VYI1 (Q8VYI1) At1g69640/F24J1.22,...    30  0.56
TC16761 similar to GB|AAL32703.1|17065098|AY062625 nucleotide su...    29  0.95
TC15402 UP|CAE45587 (CAE45587) Vacuolar proton-ATPase subunit-li...    28  2.1
TC16426 weakly similar to UP|Q9LIP0 (Q9LIP0) Genomic DNA, chromo...    27  2.8
TC8069 similar to UP|MSRA_LACSA (Q9SEC2) Peptide methionine sulf...    27  2.8
TC18806 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A lig...    27  3.6
BP043924                                                               27  3.6
BP062620                                                               27  3.6
TC13594 homologue to GB|AAP47511.1|32331967|AY164937 RTNLB18w {M...    27  3.6
AV420704                                                               27  4.7
AV413234                                                               27  4.7
TC10240                                                                27  4.7

>TC9588 
          Length = 644

 Score =  138 bits (347), Expect = 1e-33
 Identities = 83/138 (60%), Positives = 96/138 (69%), Gaps = 12/138 (8%)
 Frame = +1

Query: 143 RVQKYVETLDMLKIKNS----NGGHVPKKKPQQK----VKLPPIDEQLEGMSIGNHKLQP 194
           RVQKYVETLD+LK+KNS    NGGH  + KPQQK     +L  I EQ + +S G+H+LQ 
Sbjct: 1   RVQKYVETLDILKVKNSMAKTNGGHA-QMKPQQKHLNGKRLATIQEQPQSVSNGHHRLQQ 177

Query: 195 SLEQQSQRNSNGNSQVFQQLQHKPSTNSTSEVVVTTKWETFDSLPPLIPVTSASSSSSS- 253
           ++EQQ QR+SNGNS               SEVVVTTKWETFDSLPPLIPVTS SSSS+S 
Sbjct: 178 NVEQQ-QRDSNGNSN--------------SEVVVTTKWETFDSLPPLIPVTSTSSSSTSS 312

Query: 254 ---TNNSVHPKFKWEHFE 268
              TNNSVHPKF WE F+
Sbjct: 313 SVMTNNSVHPKFNWEFFD 366


>TC12466 similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, partial (18%)
          Length = 886

 Score =  130 bits (328), Expect = 2e-31
 Identities = 65/145 (44%), Positives = 104/145 (70%)
 Frame = +3

Query: 16  TGLHHQDQKIFYKNKERDSKAFLDIVGVKDKSKLVVMEDPIAQEKRYLEMRKNIKMERAA 75
           TGL  ++Q++F++ +E++++    + GVKDKS+L+++ED  ++E++  E+RK+ KM +A 
Sbjct: 102 TGLKPEEQRLFFRGEEKENEEHFPVEGVKDKSELLLLEDGASKERKLEELRKHNKMLKAT 281

Query: 76  KSISEISLEVDRLAGQVSALETIISKGGKVVETDVLSLIEKLMNQLLKLDGIVADGDVKL 135
           ++I+ +  EVD L+ +VSALE  +  G KV + + +   E LM QLL LDGI A+G+ KL
Sbjct: 282 EAIAGVRAEVDMLSERVSALEVAVDGGTKVSDKEFVVSTELLMRQLLTLDGIEAEGEAKL 461

Query: 136 QRKMQVKRVQKYVETLDMLKIKNSN 160
           QRK +V+RVQ  V+TLD LK +NSN
Sbjct: 462 QRKAEVRRVQNLVDTLDSLKARNSN 536



 Score = 25.8 bits (55), Expect = 8.1
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 227 VVTTKWETFDS-LPPLIPVTSASSS 250
           +VTT WETFDS +  L   TS SSS
Sbjct: 565 LVTTPWETFDSGMGSLNAPTSNSSS 639


>TC16345 weakly similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, partial (25%)
          Length = 567

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 33/81 (40%), Positives = 57/81 (69%)
 Frame = +2

Query: 6   GELKKMLTGPTGLHHQDQKIFYKNKERDSKAFLDIVGVKDKSKLVVMEDPIAQEKRYLEM 65
           G++KK+L   TGL  ++Q++F++  E+D K  L + GVKDKSKL+++E   ++E++  E 
Sbjct: 245 GDIKKLLVHKTGLEPEEQRLFFRGIEKDDKENLHLGGVKDKSKLLLLEGNTSKERKLEET 424

Query: 66  RKNIKMERAAKSISEISLEVD 86
           RK  +M +A+++IS +  EVD
Sbjct: 425 RKLNEMIKASEAISRVKAEVD 487


>TC8720 weakly similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, partial (24%)
          Length = 667

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 54/167 (32%), Positives = 73/167 (43%)
 Frame = +3

Query: 102 GGKVVETDVLSLIEKLMNQLLKLDGIVADGDVKLQRKMQVKRVQKYVETLDMLKIKNSNG 161
           G +  E + L L E LM+QLLKLDGI A+G+ +LQRK +V+RVQ  V+ +D LK +NSN 
Sbjct: 3   GNEASEKEFLELSELLMSQLLKLDGIEAEGEARLQRKAEVRRVQNIVDAIDSLKARNSN- 179

Query: 162 GHVPKKKPQQKVKLPPIDEQLEGMSIGNHKLQPSLEQQSQRNSNGNSQVFQQLQHKPSTN 221
                         P ID+                         GN+             
Sbjct: 180 --------------PFIDK-------------------------GNA------------- 203

Query: 222 STSEVVVTTKWETFDSLPPLIPVTSASSSSSSTNNSVHPKFKWEHFE 268
               V VTT+WE FDS       T +S  +S+T +S      WE F+
Sbjct: 204 ----VTVTTQWEAFDS------GTESSKDTSTTLSSTKITEDWERFD 314


>AV772355 
          Length = 115

 Score = 56.6 bits (135), Expect = 4e-09
 Identities = 27/34 (79%), Positives = 30/34 (87%)
 Frame = +1

Query: 107 ETDVLSLIEKLMNQLLKLDGIVADGDVKLQRKMQ 140
           ETD+LSL+E LMNQLL+LDGI  DGDVK QRKMQ
Sbjct: 13  ETDLLSLVELLMNQLLRLDGIAGDGDVKWQRKMQ 114


>AV426390 
          Length = 399

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/43 (34%), Positives = 21/43 (47%)
 Frame = +3

Query: 177 PIDEQLEGMSIGNHKLQPSLEQQSQRNSNGNSQVFQQLQHKPS 219
           P   Q  GMS+ N + QP  +QQ Q +S+ +        H PS
Sbjct: 30  PDHHQFPGMSLSNQQQQPQQQQQQQHHSHPDCASLIANSHSPS 158


>AV415704 
          Length = 355

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +1

Query: 225 EVVVTTKWETFDSLPPLIPVTSASSSSSSTNNSVHPKFKWEHF 267
           E +V T+W     L  L P +S+SSSSS++  S +PK KW  F
Sbjct: 124 ESLVRTRWP----LLALAPSSSSSSSSSTSATSPNPK-KWRKF 237


>AV419178 
          Length = 401

 Score = 29.6 bits (65), Expect = 0.56
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 211 FQQLQHKPSTNSTSEVVVTTKWETFDSLPPLIPVTSASS 249
           ++   H PS+N +S V   +  +T  + PPL+P +  SS
Sbjct: 339 YRSFSHSPSSNFSSSVSKISGMKTISTKPPLLPSSIFSS 223


>TC19839 weakly similar to UP|Q8VYI1 (Q8VYI1) At1g69640/F24J1.22, partial
           (13%)
          Length = 412

 Score = 29.6 bits (65), Expect = 0.56
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 211 FQQLQHKPSTNSTSEVVVTTKWETFDSL 238
           F+Q Q  P TNS S+  +TTK   FD L
Sbjct: 229 FKQKQPNPETNSASQSCITTKDLNFDKL 146


>TC16761 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
           epimerase-like protein {Arabidopsis thaliana;}, partial
           (40%)
          Length = 794

 Score = 28.9 bits (63), Expect = 0.95
 Identities = 21/56 (37%), Positives = 31/56 (54%), Gaps = 5/56 (8%)
 Frame = +1

Query: 210 VFQQLQHKP-STNSTSEVVVTTKWETFDSLPP----LIPVTSASSSSSSTNNSVHP 260
           +  Q Q KP S N T+   V +  ++F +LPP      P +S SSSSSS+ ++  P
Sbjct: 175 LLHQTQAKP*SWNVTTATSVKSTAQSFSTLPPNSSSAPPSSSHSSSSSSSPSTTLP 342


>TC15402 UP|CAE45587 (CAE45587) Vacuolar proton-ATPase subunit-like protein,
           complete
          Length = 2423

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 21/81 (25%), Positives = 33/81 (39%), Gaps = 8/81 (9%)
 Frame = +1

Query: 126 GIVADGDVKLQRKMQVKRVQKYVETLDMLKIKNSNGGHVPKKKPQQ--------KVKLPP 177
           G++   DV   +  ++KR  +    L   K +    G  PK    Q        +VKL  
Sbjct: 133 GLLQFKDVSNSKPFKIKRCGEMARKLRFFKEQMLKAGVSPKLSTTQVDVNIDNLEVKLSE 312

Query: 178 IDEQLEGMSIGNHKLQPSLEQ 198
           I+ +L  M+    KLQ S  +
Sbjct: 313 IESELTEMNANGEKLQRSYNE 375


>TC16426 weakly similar to UP|Q9LIP0 (Q9LIP0) Genomic DNA, chromosome 3, BAC
           clone:F20C19, partial (82%)
          Length = 518

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
 Frame = +2

Query: 83  LEVDRLAGQVSALETIISKGGKVVETDVLSLIEKLMNQLLKLDGI---VADGDVK----- 134
           LE++ +A ++S+L      G     T+ L+     + QL +  GI   V +G+++     
Sbjct: 143 LEMNSIARRLSSLF-----GKSACATEPLNSGRHQLQQLQQCRGIRVRVFNGNLESALAL 307

Query: 135 LQRKMQVKRVQKYVETLDMLKIKNSNGGHVPKKKPQQKVKLPPIDEQLEGMSI 187
           +QRKM    +++ ++      IKNS    + +K  +++++   +  +L+ + I
Sbjct: 308 MQRKMTSSGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMI 466


>TC8069 similar to UP|MSRA_LACSA (Q9SEC2) Peptide methionine sulfoxide
           reductase  (Protein-methionine-S-oxide reductase)
           (Peptide Met(O) reductase) , partial (71%)
          Length = 1267

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = +1

Query: 238 LPPLIPVTSASSSSSST------NNSVHPKFKW 264
           LPP +P+ + S SSSST      N+S+ P   W
Sbjct: 19  LPPRLPLFAVSESSSSTTIEAFSNSSLTPTLTW 117


>TC18806 similar to UP|Q8S564 (Q8S564) 4-coumarate:coenzyme A ligase  ,
           partial (26%)
          Length = 529

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 234 TFDSLPPLIPVTSASSSSSSTNNSVHPKFKWEHF 267
           TF +L PL+ ++    S    + S++P+F   HF
Sbjct: 466 TFHNLVPLMQISPGVVSLEGKHRSLYPRFSSRHF 365


>BP043924 
          Length = 546

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 200 SQRNSNGNSQVFQQLQHKPSTNSTSEVVVTTKW 232
           S RNS+  S +  +L  KP+  S S V  +T+W
Sbjct: 100 SPRNSSSPSSISSKLILKPANRSRSHVNGSTRW 198


>BP062620 
          Length = 555

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
 Frame = +2

Query: 151 LDMLKIKNSNGGHVPKKKPQQKVKLPPIDEQLE--GMSIGNHKLQPSLEQQSQRNSNGNS 208
           ++ +K K    G  P + P      PP D +    G+++G H L   + +  QRN N +S
Sbjct: 254 VEWMKNKPDLKGGNPDRSP------PPADLKHSD*GINLGKHGLHHQIIRHHQRNXNLSS 415

Query: 209 ------QVFQQ--LQHKPS 219
                 Q+FQ+    HKP+
Sbjct: 416 *XSPYTQIFQKNTNNHKPT 472


>TC13594 homologue to GB|AAP47511.1|32331967|AY164937 RTNLB18w {Medicago
           truncatula;} , partial (41%)
          Length = 556

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 201 QRNSNGNSQVFQQLQHKPSTNSTSEVVVTTKW 232
           Q++SN  +  F+  +HK +   +S  + TTKW
Sbjct: 554 QKSSNSVNSQFRSAEHKTAAAVSSSNI*TTKW 459


>AV420704 
          Length = 245

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +3

Query: 218 PSTNSTSEVVVTTKWETFDSLPPLIPVTSASSSSSSTNNSVHPKF 262
           PST+S     V+T W    S P L   TS++SSS S+     P+F
Sbjct: 108 PSTSS-----VSTWWRASTSSPTLSASTSSTSSSVSSPLRSIPRF 227


>AV413234 
          Length = 378

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 18/54 (33%), Positives = 26/54 (47%)
 Frame = -1

Query: 214 LQHKPSTNSTSEVVVTTKWETFDSLPPLIPVTSASSSSSSTNNSVHPKFKWEHF 267
           L H PS +S+S ++       F +LPPL   T  +S+ +ST       F   HF
Sbjct: 219 LLHHPSLSSSSVLIN*AFTFFFMALPPLQVETLEASTPTSTTTGFFKIFFMFHF 58


>TC10240 
          Length = 575

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 18/51 (35%), Positives = 22/51 (42%)
 Frame = -3

Query: 194 PSLEQQSQRNSNGNSQVFQQLQHKPSTNSTSEVVVTTKWETFDSLPPLIPV 244
           PSL  Q +  +     VF    HKPS     +VV    W    S PPL P+
Sbjct: 297 PSLSHQWRMVARSCGSVFLGHLHKPSPEHHWKVVDLPLWLC*CSNPPLSPL 145


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.311    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,755,201
Number of Sequences: 28460
Number of extensions: 45890
Number of successful extensions: 477
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of query: 268
length of database: 4,897,600
effective HSP length: 89
effective length of query: 179
effective length of database: 2,364,660
effective search space: 423274140
effective search space used: 423274140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)


Medicago: description of AC149494.2