BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149491.1 + phase: 0 /pseudo
(1441 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP054557 99 5e-21
AV409763 80 2e-15
BI418295 57 2e-08
AV780009 56 5e-08
BP081717 54 1e-07
BP080584 53 4e-07
AV779281 50 2e-06
BP058111 50 3e-06
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 44 2e-04
BP030995 43 4e-04
BP078157 41 0.001
BP063902 41 0.001
BP064269 40 0.002
BP033602 39 0.004
TC19735 similar to UP|Q8NJM5 (Q8NJM5) Probable ATP-dependent RNA... 39 0.004
AU088980 39 0.004
BP035453 39 0.008
AV780472 38 0.013
BP063694 37 0.017
AV766088 37 0.029
>BP054557
Length = 538
Score = 99.0 bits (245), Expect = 5e-21
Identities = 61/189 (32%), Positives = 95/189 (49%), Gaps = 1/189 (0%)
Frame = -2
Query: 374 LIDSGANEHICSSLHLFHSYYRIKPICVNLPNGSSVIVQYAGTVVFSPHFHITHVLYSPS 433
L+D+GA H+C +L +F + ++ P+ +++PNG I A +V FS F + VLY PS
Sbjct: 537 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 358
Query: 434 FKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLGNLCDGLYRLHPFAPASPQAH 493
F LISVS + +SL + ++Q+ T K IG GLY + PA H
Sbjct: 357 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKTIGAAEERGGLYAV--IDPAVKAKH 184
Query: 494 FISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQRLSMMHSLYSSITIDN-K 552
P + + + S+ N N +WH RLGH S+++L+++ + IT
Sbjct: 183 -------PPAEGNIKTQVSHFNFCQFDCN-LWHLRLGHTSSKKLAILQKNFPFITCKQIT 28
Query: 553 AVCDICHFA 561
+ CD CH A
Sbjct: 27 SPCDTCHMA 1
>AV409763
Length = 426
Score = 80.5 bits (197), Expect = 2e-15
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +2
Query: 3 YYVHPSEGPNSVTVTPLLTGPNYLAWNRSMKRALGTKNKFVFIDGSVPIPPMDDLNRTAW 62
+Y+HPS+ P V+ +LTG NY +W+R+M+ AL KNK F+D S+ +P D W
Sbjct: 182 FYLHPSDNPGISLVSQVLTGDNYRSWSRAMRMALIAKNKLGFVDASILVPDELDPLFHPW 361
Query: 63 ERCNNLILSWIINSVSPQIA 82
+R NN++ SWI+NSVS +A
Sbjct: 362 QRNNNIVASWILNSVSKDLA 421
>BI418295
Length = 523
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/84 (29%), Positives = 49/84 (57%)
Frame = +2
Query: 60 TAWERCNNLILSWIINSVSPQIAQTIVFHEYAIDVWIELQERFSKVDRIRVASLRSSINN 119
T W + ++++ +W++ ++SP + T++ E + VW E+ + F R + A LRS + N
Sbjct: 140 TTWIKQDSMVFTWLLTTLSPFVLPTVINCERSSQVWREILDFFENQCRAQSAKLRSELKN 319
Query: 120 LKQGDKSVLDYFTSIKSLWEELNS 143
+ +G KS+ +Y IK++ L S
Sbjct: 320 ITKGSKSITEYLRRIKTIVNTLVS 391
>AV780009
Length = 529
Score = 55.8 bits (133), Expect = 5e-08
Identities = 56/171 (32%), Positives = 81/171 (46%), Gaps = 1/171 (0%)
Frame = -3
Query: 1248 SCYS*SSKIPKRFTRQRNFLPTRFRITHSGIH*CRLGRL*RYKAFYLRTLFLSWTISYML 1307
SC S SS + +R T R+F + F + * LG L RY F +SW +S +
Sbjct: 527 SCNSCSS-LCQRSTCSRSFFLS*FSTEAPSL**F*LGWLPRYSTFCHWIFHISWHLSNFM 351
Query: 1308 ENQETTYSFQILF*S*V*SNGICYL*NAMVIILAQRFTSSMCS-TSCALL**SKCYAHCI 1366
++ET + F + * V* CY + V +L + CS T +LL* S C +HC
Sbjct: 350 AHEETNHCFSFIL*GRV*GP-CCYCV*SPVALLFVPVPQAQCSITGSSLL*QSVCASHCS 174
Query: 1367 KSCFS*KN*TS*N*LSHCKGKATSRHLQTPSSYHS*SNW*FFYKGFISSTF 1417
+S S ++ T LS C + S +P+ +HS S * FY+ S F
Sbjct: 173 QSDISREDQTHRTGLSCCPCQVASWLDPSPAYFHSPSAS*HFYQTLPPSLF 21
>BP081717
Length = 291
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = -1
Query: 518 SIPSNAIWHFRLGHLSNQRLSMMHSLYSSITIDNKAVCDICHFAKQRKLPYNLS 571
S P +WHFRLGH S++ L + ++ + + + +CD CH AKQ KLP+ +S
Sbjct: 186 SHPQFDMWHFRLGHPSSKVLQHISKVFPYVKLHSNIICDFCHMAKQTKLPFPIS 25
>BP080584
Length = 507
Score = 52.8 bits (125), Expect = 4e-07
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Frame = -3
Query: 460 VIQDVKTQKMIGLGNLCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSS- 518
+I D K IG GLY L P S + +S VSP +CNSVS + + S
Sbjct: 328 LIMDYSAYKRIGTARAVKGLYLLMKGNPKSTTSVTCNS-VSP----ACNSVSVSGSDSPV 164
Query: 519 ---------IPS-NAIWHFRLGHLSNQRLSMMHSLYSSITIDNKAVCDICHFAK 562
IPS + +WHFRLGH S + + ++ I + + VCDIC AK
Sbjct: 163 VDTNLACNFIPSMHNLWHFRLGHPSFVKEQSIRDIFPYIVCNKEQVCDICPLAK 2
>AV779281
Length = 505
Score = 50.4 bits (119), Expect = 2e-06
Identities = 34/144 (23%), Positives = 68/144 (46%), Gaps = 11/144 (7%)
Frame = +1
Query: 5 VHPSEGPNSVTVTPLLTGPNYLAWNRSMKRALGTKNKFVFIDGSVPIPP--MDDLNRT-- 60
V PS +++ L N+L+W + ++ + T F+D +PP + D +R
Sbjct: 58 VQPSLSSSALVHNAYLEDTNFLSWKQHVEGIVRTHRWQSFLDHP-DVPPRFLSDEDRVNA 234
Query: 61 -------AWERCNNLILSWIINSVSPQIAQTIVFHEYAIDVWIELQERFSKVDRIRVASL 113
WE+ ++ + +W+++S+SP + T+V + V + + F + L
Sbjct: 235 VENPAYQLWEQQDSALFTWLLSSLSPTVLPTVVNCSQSWQVREAVLDFFKAHSFAQSTQL 414
Query: 114 RSSINNLKQGDKSVLDYFTSIKSL 137
RS + ++ +G K+ DY IKS+
Sbjct: 415 RSELRSIAKGSKTCSDYLKRIKSI 486
>BP058111
Length = 570
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/166 (27%), Positives = 75/166 (44%), Gaps = 1/166 (0%)
Frame = -1
Query: 410 IVQYAGTVVFSPHFHITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKM 469
I+Q+ G ++ + + LY F L+ + ++ + L +L + Q+ T KM
Sbjct: 483 IIQHRGLLLSNRRLYW---LYCLRFLPVLVRLHQVIRLLLL*QKMVLAIH--QERPTLKM 319
Query: 470 IGLGNLCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRL 529
IG LY L PA H P + + + S+ N N +WH RL
Sbjct: 318 IGAAEERGDLYAL--IDPAVKVKH-------PPVEDNIKTQVSHFNFCQFDCN-LWHLRL 169
Query: 530 GHLSNQRLSMMHSLYSSITIDN-KAVCDICHFAKQRKLPYNLSTLL 574
GH S+++L+++ + IT + CD CH AKQ+KL + S L
Sbjct: 168 GHTSSKKLAILQKNFPFITCKKITSPCDTCHMAKQKKLSFPNSVTL 31
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/86 (41%), Positives = 46/86 (52%)
Frame = +3
Query: 1354 ALL**SKCYAHCIKSCFS*KN*TS*N*LSHCKGKATSRHLQTPSSYHS*SNW*FFYKGFI 1413
ALL *S C +C C S* *TS +*L C GK S+ L + S + *SN F +
Sbjct: 66 ALLR*SVC*TYCN*CCVS*TY*TSRH*LPCCSGKVASQALSSTSYFKC*SNSRHFDQAP* 245
Query: 1414 SSTF*PLAFQVGDVRHLPPSNLWGDI 1439
TF L+FQ G +++ S LWG I
Sbjct: 246 IWTFFTLSFQAGSSQYILLS-LWGGI 320
>BP030995
Length = 458
Score = 42.7 bits (99), Expect = 4e-04
Identities = 33/123 (26%), Positives = 57/123 (45%), Gaps = 9/123 (7%)
Frame = -3
Query: 425 ITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLGNLCDGL----- 479
+ ++L+ P L SVS C+ F ++ +++ +T++ + G L +GL
Sbjct: 420 LNNLLHVPGVCKNLSSVSXFCKQNNVFFEFHSDSCLVKSQETEETLLQGTLRNGLCAFDN 241
Query: 480 ----YRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQ 535
LH + S A SS SP + +S + SSN + + +WH RLGH S +
Sbjct: 240 LLHKVNLHSASTLSNSALLSSS--SPASALSVSVFSSNKCAQADIDSRLWHSRLGHASQK 67
Query: 536 RLS 538
+S
Sbjct: 66 IVS 58
>BP078157
Length = 395
Score = 41.2 bits (95), Expect = 0.001
Identities = 39/128 (30%), Positives = 59/128 (45%), Gaps = 7/128 (5%)
Frame = -2
Query: 448 LPYHVHFLLNTYVIQDVKTQKMIGLGNLCDGLYRLHPF-----APASPQAHFISSAVSPT 502
LP H LL + D KMIG GNL + LY A SPQ +SS S
Sbjct: 367 LPQRNHHLL---IQLDPVRLKMIGRGNLHNKLYLFEAQSQVFEANGSPQVS-VSSVFSSI 200
Query: 503 NKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQRLSMMHSL--YSSITIDNKAVCDICHF 560
+ C + I +WH RLGHLS++ L ++ +L ++ + + C++C
Sbjct: 199 LCVFCFH*FKHK----IKLPRLWHSRLGHLSDKVLKVVSNLVPFTVLPDFHSHNCNVCPL 32
Query: 561 AKQRKLPY 568
+K R+L +
Sbjct: 31 SKMRRLSF 8
>BP063902
Length = 494
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/85 (31%), Positives = 46/85 (53%), Gaps = 7/85 (8%)
Frame = -3
Query: 505 MSCNSVSSNNNVS-SIP----SNAIWHFRLGHLSNQRLSMMHS--LYSSITIDNKAVCDI 557
+ CNS+ V+ S P ++++WH RLGH ++ L+ + + L + +VCD
Sbjct: 255 LRCNSLGDLYPVTRSSPFAGLASSVWHHRLGHPASSALNHLRNNKLIFCEPSRSSSVCDS 76
Query: 558 CHFAKQRKLPYNLSTLLLHLNLNYC 582
C K +LP++ S LLL +L +C
Sbjct: 75 CVLGKHVRLPFSSSALLL*DHLIFC 1
>BP064269
Length = 506
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -2
Query: 462 QDVKTQKMIGLGNLCDGLYRLHPFAPA-SPQAHFISSAVSPTNKMSCNSVSSNNNVSSIP 520
QD T +MIG N GLY L A S + +SS S +SV S
Sbjct: 301 QDSLTLRMIGKANPQSGLYYLDSRTMAKSCTLNSVSSFTSAVTSPETSSVFSTFTPCPKV 122
Query: 521 SNAIWHFRLGHLSNQRLSMM 540
+ +WH+RLGHLS Q +++
Sbjct: 121 AXCLWHYRLGHLSFQYQALL 62
>BP033602
Length = 533
Score = 39.3 bits (90), Expect = 0.004
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +3
Query: 467 QKMIGLGNLCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWH 526
QKMIG + DGLY + F + A MSC SV +WH
Sbjct: 153 QKMIGSAKMKDGLYYF--------EDTFRNKAAQGLCGMSCTSVRD--------QIMLWH 284
Query: 527 FRLGHLSNQRL-SMMHSLYSSITIDNKAVCDICHFAKQRKLPY 568
RLGH + Q L + L+ ++ + C+ C AK ++ PY
Sbjct: 285 NRLGHPNFQYLRHLFPDLFKNVNC-SSLECESCVLAKNQRAPY 410
>TC19735 similar to UP|Q8NJM5 (Q8NJM5) Probable ATP-dependent RNA helicase,
partial (5%)
Length = 565
Score = 39.3 bits (90), Expect = 0.004
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = -3
Query: 698 LNFQIFFGHMLLFMLFS**IKCLPLFLNKNLLINFFMILYLT*IPSKFLVVYVLLLLFLL 757
L +F H +L +L * +P+ + NLL+ FF +L ++ I FLVV VLLLL L
Sbjct: 353 LLLSLFHFHFMLLLLLLL*RFSIPVTVIPNLLLFFFCVLLVSNISRSFLVVLVLLLLLLF 174
Query: 758 KGPNFN 763
FN
Sbjct: 173 VVLCFN 156
>AU088980
Length = 360
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/97 (38%), Positives = 50/97 (51%)
Frame = +3
Query: 680 LKESINISLMLLELYFSNLNFQIFFGHMLLFMLFS**IKCLPLFLNKNLLINFFMILYLT 739
L+E+I IS ML E L G +LL ML * I F + LIN ++ L
Sbjct: 12 LRENIGIS*MLQEP*CFILICLKICGLLLLNMLPI*SIXYHHRF*RASALINSLIMTLLL 191
Query: 740 *IPSKFLVVYVLLLLFLLKGPNFNLEQESLFSLQVRI 776
KFLV +V+LLL L G N LE ++FSL +++
Sbjct: 192 Y*T*KFLVPFVILLLLLTXGRNLILEPANVFSLVLKL 302
>BP035453
Length = 550
Score = 38.5 bits (88), Expect = 0.008
Identities = 25/68 (36%), Positives = 34/68 (49%), Gaps = 2/68 (2%)
Frame = -3
Query: 285 SSNAVTSEHAVDSHTSSEGTSSSSQT--GLTQEQYVHLVSLLQQSSLVPSATPPNPASTN 342
S+N V H D S+G SS T G T +QY HL++LL S S++ + AS N
Sbjct: 545 SANCV---HIADEDQESQGGSSGQDTRFGFTADQYQHLLALLPTSESKSSSSSQHTASVN 375
Query: 343 HVATSFPS 350
A P+
Sbjct: 374 SCAQVLPT 351
Score = 30.0 bits (66), Expect = 2.7
Identities = 25/87 (28%), Positives = 42/87 (47%)
Frame = -1
Query: 463 DVKTQKMIGLGNLCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSN 522
D + IG GLY L+ + +P +H +S S N S +VSS+ + S +
Sbjct: 307 DSSAWRTIGTVKAVKGLYILNK-SSVTPLSH-CNSVHSTVNIPSSVNVSSHFDPSV---H 143
Query: 523 AIWHFRLGHLSNQRLSMMHSLYSSITI 549
+WH+RLGH S + + L+ + +
Sbjct: 142 NLWHYRLGHPSFVKGQSIRDLFPYVHV 62
>AV780472
Length = 511
Score = 37.7 bits (86), Expect = 0.013
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = -1
Query: 462 QDVKTQKMIGLGN-LCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIP 520
+D+K+ +MIGLG + +GLY LH +++ TN SS N
Sbjct: 373 EDLKSSRMIGLGKPIEEGLYYLH------------DASIFKTN------YSSTFNT---- 260
Query: 521 SNAIWHFRLGHLSNQRLSMMHSLYSSITIDNKAVCDICHFAKQRKLPYN 569
F G R+ ++ YSSI + VCDIC AK + LP++
Sbjct: 259 ------FT*GIYL--RMQVLSQFYSSIPVYQTGVCDICQVAKPKCLPFS 137
>BP063694
Length = 511
Score = 37.4 bits (85), Expect = 0.017
Identities = 31/119 (26%), Positives = 50/119 (41%), Gaps = 3/119 (2%)
Frame = -2
Query: 454 FLLNTYVIQDVKTQKMIGLGNLCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSN 513
FL +++VIQ+ KT ++G GLY L+ QA +S+ P
Sbjct: 507 FLDDSFVIQNRKTGAVLGRXRCDQGLYVLN----QDSQALLTTSSPLPR----------- 373
Query: 514 NNVSSIPSNAIWHFRLGHLSNQRLSMMHS---LYSSITIDNKAVCDICHFAKQRKLPYN 569
S +WH RLGH++ + +H L S + C C AK ++L ++
Sbjct: 372 ------ASFELWHSRLGHVNFDIIKQLHKHGCLDVSSILPKPICCTSCQMAKSKRLVFH 214
>AV766088
Length = 501
Score = 36.6 bits (83), Expect = 0.029
Identities = 24/71 (33%), Positives = 35/71 (48%), Gaps = 7/71 (9%)
Frame = -3
Query: 505 MSCNSVSSNNNVS-SIP----SNAIWHFRLGHLSNQRLSMMHS--LYSSITIDNKAVCDI 557
M CNS V+ S P + ++WH RLGH S+ L + S S ++ VC+
Sbjct: 379 MRCNSPGDLYPVTLSFPFAGIAQSLWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCES 200
Query: 558 CHFAKQRKLPY 568
C F K +LP+
Sbjct: 199 CVFGKHVRLPF 167
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.356 0.156 0.555
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,391,040
Number of Sequences: 28460
Number of extensions: 493974
Number of successful extensions: 6962
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 5215
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 5793
length of query: 1441
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1339
effective length of database: 1,994,680
effective search space: 2670876520
effective search space used: 2670876520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149491.1