BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149490.13 + phase: 0
(227 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP032958 110 2e-25
BP033992 71 1e-13
BP053381 67 3e-12
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p... 64 2e-11
TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, part... 51 1e-07
TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-resp... 50 4e-07
AV415674 48 2e-06
AV422058 47 2e-06
BP031533 47 3e-06
TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-respon... 45 1e-05
BP080979 35 0.008
TC18159 homologue to UP|COLA_ARATH (O82256) Zinc finger protein ... 35 0.011
AV406605 32 0.090
TC17696 similar to UP|Q9FUK8 (Q9FUK8) CONSTANS-like protein, par... 30 0.26
TC12462 weakly similar to UP|Q8TW78 (Q8TW78) Uncharacterized mem... 30 0.26
TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-ac... 30 0.26
TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%) 29 0.59
TC14884 homologue to UP|Q93XV7 (Q93XV7) Hydroxypyruvate reductas... 29 0.76
AV775197 29 0.76
BP065897 28 1.00
>BP032958
Length = 526
Score = 110 bits (275), Expect = 2e-25
Identities = 53/72 (73%), Positives = 59/72 (81%)
Frame = -1
Query: 156 RKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEEDEKWNNIFNSIVAANLVHD 215
RKTLAD RPR+RGRFARNDE D+KP V+WSHIG EEEDEEDE W +IF+SIVAA +
Sbjct: 526 RKTLADSRPRVRGRFARNDETDQKPTVQWSHIGAAEEEDEEDESWVSIFDSIVAAANLTQ 347
Query: 216 EFQGSSSFGLLY 227
E Q SSSFGLLY
Sbjct: 346 ESQASSSFGLLY 311
>BP033992
Length = 506
Score = 71.2 bits (173), Expect = 1e-13
Identities = 39/59 (66%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Frame = -1
Query: 142 RNQRNFNKKIKYVCRKTLADRRPRIRGRFARND---EIDKKPIVEWSHIGGGEEEDEED 197
RNQRNFNK IKY CRKTLAD RPRIRGRFARND EI K P V +EDE D
Sbjct: 506 RNQRNFNKTIKYACRKTLADNRPRIRGRFARNDETCEITKAPCVT-------RDEDEAD 351
>BP053381
Length = 524
Score = 66.6 bits (161), Expect = 3e-12
Identities = 29/51 (56%), Positives = 39/51 (75%)
Frame = -2
Query: 129 EEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKK 179
EE+ ++ RYR K+ +RNF +KIKY CRK LAD +PRIRGRFA+ +E + K
Sbjct: 418 EERLQKLSRYRNKKTKRNFGRKIKYACRKALADSQPRIRGRFAKTEESEVK 266
>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(57%)
Length = 1185
Score = 64.3 bits (155), Expect = 2e-11
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 19/205 (9%)
Frame = +1
Query: 4 NNSIPDFTELDSFQDTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQYNNGTH 63
N+S ++E+D+ + +++++ E +S ++ G P+ Q I++ Y+N +
Sbjct: 490 NSSHYSYSEIDTVELDFTKIDSPEHNSAATADG-----VVPVQSQSKITTIEHHYDNDAN 654
Query: 64 H---YPLSAFFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEG- 119
+ +P S FA N +H+H V SP S E ++ +G
Sbjct: 655 NQIDFPTSKPFAH---------------------NYNAKSHYHAVSSP-SMEVGVVPDGN 768
Query: 120 -MSRV--CPY------------SPEEKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRP 164
MS + C Y S +++ R+ RYR KR R F K I+Y RK A+ RP
Sbjct: 769 AMSEISYCCYGTPAPAVEAVQFSAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRP 948
Query: 165 RIRGRFARNDEIDKKPIVEWSHIGG 189
RI+GRFA+ +++ + E G
Sbjct: 949 RIKGRFAKRSDVNVNLLTEEDPFSG 1023
>TC14920 similar to UP|BAC92733 (BAC92733) Hd1-like protein, partial (15%)
Length = 645
Score = 51.2 bits (121), Expect = 1e-07
Identities = 21/46 (45%), Positives = 31/46 (66%)
Frame = +3
Query: 130 EKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDE 175
+++ ++ RYR KR R F K I+Y RK A+ RPRI+GRFA+ +
Sbjct: 129 DREAKVMRYREKRKNRRFEKTIRYASRKAYAESRPRIKGRFAKRSD 266
>TC8495 similar to UP|Q9LVG4 (Q9LVG4) Emb|CAB86035.1 (Pseudo-response
regulator 3), partial (9%)
Length = 783
Score = 49.7 bits (117), Expect = 4e-07
Identities = 20/42 (47%), Positives = 32/42 (75%)
Frame = +1
Query: 131 KKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR 172
++ + ++R+KR +R F KK++Y RK LA++RPRIRG+F R
Sbjct: 76 REAALAKFRLKRKERCFEKKVRYHSRKKLAEQRPRIRGQFVR 201
>AV415674
Length = 319
Score = 47.8 bits (112), Expect = 2e-06
Identities = 19/42 (45%), Positives = 31/42 (73%)
Frame = +2
Query: 131 KKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR 172
++ + ++R+KR +R F K++Y RK LA++RPRIRG+F R
Sbjct: 131 REAALAKFRLKRKERCFENKVRYHSRKKLAEQRPRIRGQFVR 256
>AV422058
Length = 442
Score = 47.4 bits (111), Expect = 2e-06
Identities = 19/45 (42%), Positives = 32/45 (70%)
Frame = -1
Query: 130 EKKVRIERYRIKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARND 174
+++ ++RY+ KR R F KKI+Y RK A++RPR++GRF + +
Sbjct: 361 QREASVQRYKEKRQNRLFAKKIRYEVRKLNAEKRPRMKGRFVKRE 227
>BP031533
Length = 529
Score = 47.0 bits (110), Expect = 3e-06
Identities = 27/79 (34%), Positives = 42/79 (52%), Gaps = 2/79 (2%)
Frame = -1
Query: 96 GMQHNHHHHVDSPLSSESSMIIEGMSRVCPY--SPEEKKVRIERYRIKRNQRNFNKKIKY 153
G H + ++ P +S S + R PY + +E+ + RY+ K+ R + K I+Y
Sbjct: 529 GEAHAYGNNEGQPSNSIKSETLPTTPRPVPYELASQERDSALLRYKQKKKTRRYEKHIRY 350
Query: 154 VCRKTLADRRPRIRGRFAR 172
RK A+ R RIRGRFA+
Sbjct: 349 ESRKARAESRIRIRGRFAQ 293
>TC12008 similar to GB|BAB13743.1|10281006|AB046955 pseudo-response
regulator 5 {Arabidopsis thaliana;} , partial (7%)
Length = 496
Score = 44.7 bits (104), Expect = 1e-05
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +3
Query: 121 SRVCPYSPEEKKVRIERYRIKRNQRN---FNKKIKYVCRKTLADRRPRIRGRFAR 172
+RV +++ + ++R KR +R F+KK++Y RK LA++RPR RG+F R
Sbjct: 72 NRVDQNKASQRQAALTKFRQKRKEREERCFHKKVRYQSRKRLAEQRPRFRGQFVR 236
>BP080979
Length = 352
Score = 35.4 bits (80), Expect = 0.008
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 1/53 (1%)
Frame = +1
Query: 53 SHSLQYNNGTHHYPL-SAFFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHH 104
+HSL THH+ + S+ + LD ++ KV G + + QH+HHHH
Sbjct: 82 THSLSLKPITHHHHMDSSTMVEELDLNNLKALKVLGKGAMGTVFLXQHHHHHH 240
>TC18159 homologue to UP|COLA_ARATH (O82256) Zinc finger protein
constans-like 10, partial (9%)
Length = 468
Score = 35.0 bits (79), Expect = 0.011
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 141 KRNQRNFNKKIKYVCRKTLADRRPRIRGRFAR 172
K+ R + K I+Y RK A+ R RIRGRFA+
Sbjct: 144 KKKTRRYEKHIRYESRKARAESRIRIRGRFAQ 239
>AV406605
Length = 427
Score = 32.0 bits (71), Expect = 0.090
Identities = 32/121 (26%), Positives = 44/121 (35%), Gaps = 4/121 (3%)
Frame = +3
Query: 13 LDSFQDTLSQLNNSELSSGYSSYGGSPS----PSTPILMQRSISSHSLQYNNGTHHYPLS 68
L +F + S ++ E SG GSPS S P R H N +H +P S
Sbjct: 27 LPTFGPSTSNGSSIETLSGPQFLWGSPSLHSEQSKPTAWSRPSVGHPFTSNGKSHAFPFS 206
Query: 69 AFFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGMSRVCPYSP 128
+ + + S Q +HHHHV S+ S + E P SP
Sbjct: 207 SQNSSFVSSS-------------------QPHHHHHVG---SAPSGLPFERHFGFLPESP 320
Query: 129 E 129
E
Sbjct: 321 E 323
>TC17696 similar to UP|Q9FUK8 (Q9FUK8) CONSTANS-like protein, partial (5%)
Length = 528
Score = 30.4 bits (67), Expect = 0.26
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 160 ADRRPRIRGRFARNDEIDKK 179
A+ RPRI+GRFA+ EID +
Sbjct: 1 AETRPRIKGRFAKRSEIDSE 60
>TC12462 weakly similar to UP|Q8TW78 (Q8TW78) Uncharacterized membrane
protein specific for M.kandleri, MK-9 family, partial
(6%)
Length = 812
Score = 30.4 bits (67), Expect = 0.26
Identities = 34/109 (31%), Positives = 47/109 (42%), Gaps = 3/109 (2%)
Frame = +1
Query: 13 LDSFQ-DTLSQLNNSELSSGYSSYGGSPSPSTPILMQRSISSHSLQY--NNGTHHYPLSA 69
L SFQ T+ ++ LSS ++ SP PSTP+L+ S SL + H+PLS
Sbjct: 37 LFSFQASTILLTTHAHLSSLTTTDPSSPPPSTPLLLPGFHDSLSLSHAVTQAQRHHPLS- 213
Query: 70 FFADLLDSDDAPVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIE 118
L S + +TG G H H PLS S+ +E
Sbjct: 214 -----LSSTSCSLHNT-TTG------GRPHTAQRH--HPLSHSLSLSVE 318
>TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
glucosamine transferase {Arabidopsis thaliana;} ,
partial (16%)
Length = 833
Score = 30.4 bits (67), Expect = 0.26
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 80 APVRKVCSTGDLQRINGMQHNHHHHVDSPLSSESSMIIEGMSRVCPYSPEEK 131
+P + GD R H +HHH+ P SS++S + RV P+S +++
Sbjct: 173 SPATMISVQGDHHR-----HQYHHHLQIPGSSDTSRLQFTADRVEPFSVKQE 313
>TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%)
Length = 539
Score = 29.3 bits (64), Expect = 0.59
Identities = 17/42 (40%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = -2
Query: 38 SPSPSTPILMQRSIS-SHSLQYNNGTHHYPLSAFFADLLDSD 78
SP PS P L I SH+ +YN + AF ADL S+
Sbjct: 169 SPPPSPPSLSHTKIDLSHAPEYNTDPSSFSAKAFTADLCFSN 44
>TC14884 homologue to UP|Q93XV7 (Q93XV7) Hydroxypyruvate reductase ,
partial (66%)
Length = 921
Score = 28.9 bits (63), Expect = 0.76
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 44 PILMQRSISSHSLQYNNGTHHYPLSAFFADLLDSDDAPV 82
P+L + +ISS + YNN T H+ F++L+ S PV
Sbjct: 62 PVLRRYTISSSPISYNNKTRHH----HFSELVHSMAKPV 166
>AV775197
Length = 439
Score = 28.9 bits (63), Expect = 0.76
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -1
Query: 153 YVCRKTLADRRPRIRGRFARNDEIDKKP 180
Y RK A+ RPRI+ RFA + + P
Sbjct: 439 YASRKAYAESRPRIKARFALRSDDNNNP 356
>BP065897
Length = 499
Score = 28.5 bits (62), Expect = 1.00
Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 6/31 (19%)
Frame = +1
Query: 94 INGMQHNHHHHVDSPL------SSESSMIIE 118
+ + H+HHHH SP SS+ +MI+E
Sbjct: 28 VTNLHHHHHHHHQSPAINGSCGSSDRTMILE 120
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,409,586
Number of Sequences: 28460
Number of extensions: 69483
Number of successful extensions: 843
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of query: 227
length of database: 4,897,600
effective HSP length: 87
effective length of query: 140
effective length of database: 2,421,580
effective search space: 339021200
effective search space used: 339021200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)
Medicago: description of AC149490.13