Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149490.11 + phase: 0 
         (304 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV428731                                                               42  2e-04
TC16223 weakly similar to PIR|T04762|T04762 chitinase homolog T1...    38  0.002
AV423361                                                               33  0.078
AI967677                                                               29  0.86
BP049058                                                               29  0.86
BP083871                                                               28  1.9
TC17033                                                                28  1.9
BP056650                                                               27  4.3
TC17082                                                                27  4.3
AV779952                                                               26  9.5

>AV428731 
          Length = 151

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 23/28 (81%)
 Frame = -2

Query: 276 GIFVYSADDSKADGFRYEKEAQEVLASP 303
           GIFV+SADDS  +GF YEK++Q +LA P
Sbjct: 150 GIFVWSADDSMGNGFPYEKQSQALLAXP 67


>TC16223 weakly similar to PIR|T04762|T04762 chitinase homolog T16H5.170 -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (35%)
          Length = 570

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
 Frame = +2

Query: 11  ILLILTTSLFASTILAANSNLFREYIGAQFKGVKFSDVPINPNVNFHFILSFA-IDYDTS 69
           + L++   L+ S+  AA         G  + G   S   INP+   H   +FA +D  T+
Sbjct: 41  LTLLVVLQLYFSSAEAAIKG------GYWYSGSGLSVSDINPSHFTHLFCAFADLDLQTN 202

Query: 70  SPP-SPTNG-NFNIFWDTQNLSPSEVSFIKNQNPNVKVALSLGGDTVQGDPVNFIPSSID 127
           +   SP N   F+ F  T          ++ +NP+VK  LS+GG        NF  S + 
Sbjct: 203 TLTISPANAAQFSTFTQT----------LQAKNPSVKTLLSIGGGGGHDLAANF--SKMA 346

Query: 128 SWVSNA---VSSLTSIIKTYNLDGIDVDYEH 155
           S  S+    + S   + +  N  G+D+D+E+
Sbjct: 347 SQASSRKTFIDSSIQLARKNNFHGLDLDWEY 439


>AV423361 
          Length = 454

 Score = 32.7 bits (73), Expect = 0.078
 Identities = 15/49 (30%), Positives = 30/49 (60%), Gaps = 3/49 (6%)
 Frame = -2

Query: 62  FAIDYDTS---SPPSPTNGNFNIFWDTQNLSPSEVSFIKNQNPNVKVAL 107
           FA+ +D     S P+P+N N+N+  + Q+ +P ++  I ++N NV + +
Sbjct: 183 FAVYWDRFGDFSNPNPSNPNWNLSMEPQSTNPMQIQ*ISHKNSNVLITI 37


>AI967677 
          Length = 407

 Score = 29.3 bits (64), Expect = 0.86
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 92  EVSFIKNQNPNVKVALSLGGDTV-QGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLDGID 150
           ++  +K +  ++K  LS GG T  Q    NF  ++     +  V S   +++    DG+D
Sbjct: 190 QLYLLKQRKRSLKTILSFGGWTYSQAGHFNFATNATSR--ATFVKSAIQLLEDNGFDGLD 363

Query: 151 VDYEH 155
           +D+E+
Sbjct: 364 IDWEY 378


>BP049058 
          Length = 534

 Score = 29.3 bits (64), Expect = 0.86
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 43  VKFSDVPINP--NVNFHFILSFAIDYDTSSPPSPTNGNFNIFWD-TQNLSPSEVSFIKNQ 99
           V+FSD P     N +   +++  + YD +        +FN FWD   + +PS +S + NQ
Sbjct: 316 VQFSDHPTIYFYNTSLTLVITGKLMYDMALLSKEAITDFNFFWDGNHSYNPSSLSNLGNQ 495

Query: 100 NPNVKVAL 107
           +  + +++
Sbjct: 496 SIAMSISI 519


>BP083871 
          Length = 373

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 15  LTTSLFASTILAANSNLFREYIGAQF-KGVKFSDVPINPNVNFHFIL 60
           L + +F STIL ++  L+     A   KGV   D+PIN  V+  F++
Sbjct: 154 LYSRIFGSTILESSITLYFFLTPALCCKGVSIMDIPINWKVHLRFLV 14


>TC17033 
          Length = 950

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
 Frame = +2

Query: 48  VPINPNVNFHFILSFAIDYD----TSSPPSPTNGNFNIFWDTQNLSPSEVS 94
           V  NP  NF   LS   DYD     + P  P+ G F++F D   ++  ++S
Sbjct: 569 VAFNPQGNFDLSLS---DYDDAPEVTPPMPPSEGRFDVFIDNDAITRLDLS 712


>BP056650 
          Length = 496

 Score = 26.9 bits (58), Expect = 4.3
 Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
 Frame = +3

Query: 99  QNPNVK---VALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSLTSIIKTYNLD 147
           +NP ++   +AL    D +  DP+NF      +WV + V +   I  T  LD
Sbjct: 312 ENPRIRNAYIALQAWKDAILSDPLNF----TTNWVGSNVCNYNGIYCTQALD 455


>TC17082 
          Length = 554

 Score = 26.9 bits (58), Expect = 4.3
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +1

Query: 98  NQNPNVKVALSLGGDTVQGDPVNFIPSSIDSWVSNAVSSL-----TSIIKTYNLDGIDVD 152
           +Q  +V   +S  GD      +  IPS+   W+   VSSL      S+ +   + GID D
Sbjct: 31  SQKLSVIKVVSFAGDGFVPTCLGNIPSTGKLWMVTGVSSLPGSNYPSVARVRVISGIDGD 210

Query: 153 YEHFI-GDPN 161
            E  + GD N
Sbjct: 211 QEPVVLGDDN 240


>AV779952 
          Length = 557

 Score = 25.8 bits (55), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 94  SFIKNQNPNVKVALSLGGDTVQGDPV 119
           S I N + N+++ LSLGGD ++G  V
Sbjct: 20  SGITN*DCNLRIGLSLGGDFIKGRQV 97


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,275,874
Number of Sequences: 28460
Number of extensions: 70011
Number of successful extensions: 373
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of query: 304
length of database: 4,897,600
effective HSP length: 90
effective length of query: 214
effective length of database: 2,336,200
effective search space: 499946800
effective search space used: 499946800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)


Medicago: description of AC149490.11