BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149471.8 + phase: 0
(229 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17069 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), parti... 217 2e-57
TC17917 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {Ar... 167 1e-42
TC8116 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partia... 166 4e-42
TC8117 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partia... 151 1e-37
TC16853 similar to UP|Q93ZP3 (Q93ZP3) At1g32359/F27G20.10, parti... 46 5e-06
BI417981 45 1e-05
TC16084 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H... 45 1e-05
AV407717 35 0.011
AV776901 34 0.024
TC12272 34 0.024
TC14620 33 0.041
TC13404 similar to GB|AAP68215.1|31711718|BT008776 At1g51580 {Ar... 33 0.054
TC17221 weakly similar to UP|Q84ZX0 (Q84ZX0) HEN4, partial (9%) 32 0.092
AV772854 32 0.12
BP063686 32 0.12
TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization ... 31 0.16
TC18011 30 0.27
TC17101 similar to UP|PIN4_MOUSE (Q9CWW6) Peptidyl-prolyl cis-tr... 30 0.45
TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor,... 29 0.78
TC10891 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein HU... 28 1.0
>TC17069 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partial (33%)
Length = 577
Score = 217 bits (552), Expect = 2e-57
Identities = 103/122 (84%), Positives = 113/122 (92%)
Frame = +2
Query: 108 VSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMV 167
+SINA+LAGAIIGKN VNSKQIC +TGAKLSIREHDSDPNL+NIELEGSFDQI QASAMV
Sbjct: 2 ISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMV 181
Query: 168 HDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
H+LIL+VSSVSGPP KN +SQ SAP +N KTKLCENF +GSCTFGERCHFAHGTDELR+P
Sbjct: 182 HELILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAQGSCTFGERCHFAHGTDELRRP 361
Query: 228 GM 229
GM
Sbjct: 362 GM 367
Score = 42.0 bits (97), Expect = 9e-05
Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2
Query: 33 KTRLCNKFNTAEG-CKFGDKCHFAHGEWELGRP 64
KT+LC F A+G C FG++CHFAHG EL RP
Sbjct: 269 KTKLCENF--AQGSCTFGERCHFAHGTDELRRP 361
>TC17917 similar to GB|AAO63324.1|28950801|BT005260 At5g06770 {Arabidopsis
thaliana;}, partial (35%)
Length = 587
Score = 167 bits (424), Expect = 1e-42
Identities = 73/95 (76%), Positives = 81/95 (84%)
Frame = +1
Query: 1 MINVGSSPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWE 60
MINVGSSP IP +GRNP P SFPDGSSPPV KTR+CNK+N++EGCKFGD+CHFAHGEWE
Sbjct: 301 MINVGSSPTIPQMGRNPVPPPSFPDGSSPPVVKTRMCNKYNSSEGCKFGDRCHFAHGEWE 480
Query: 61 LGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPAHG 95
LGRPT+P YED R GQMQS+ GGRIEPPPP G
Sbjct: 481 LGRPTLPPYEDPRGFGQMQSNRGGGRIEPPPPGRG 585
Score = 41.6 bits (96), Expect = 1e-04
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +1
Query: 171 ILNVSSVSGPP--GKNITSQTSAPANN----FKTKLCENFTKGS-CTFGERCHFAHGTDE 223
++NV S P G+N S P + KT++C + C FG+RCHFAHG E
Sbjct: 301 MINVGSSPTIPQMGRNPVPPPSFPDGSSPPVVKTRMCNKYNSSEGCKFGDRCHFAHGEWE 480
Query: 224 LRKP 227
L +P
Sbjct: 481 LGRP 492
Score = 37.0 bits (84), Expect = 0.003
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH 56
+K++ C KF + GC FGD CHF H
Sbjct: 193 SKSKPCTKFFSTSGCPFGDGCHFLH 267
Score = 27.7 bits (60), Expect = 1.7
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 197 KTKLCENFTKGS-CTFGERCHFAH 219
K+K C F S C FG+ CHF H
Sbjct: 196 KSKPCTKFFSTSGCPFGDGCHFLH 267
>TC8116 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partial (31%)
Length = 595
Score = 166 bits (419), Expect = 4e-42
Identities = 87/129 (67%), Positives = 98/129 (75%), Gaps = 7/129 (5%)
Frame = +2
Query: 108 VSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMV 167
+S+ A+LAGAIIGK VNSKQIC TGAKLSIREH+SDPNLRNIELEGSFDQIK+AS MV
Sbjct: 2 ISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMV 181
Query: 168 HDLILNVSSVSGPPGKNITSQTSAP-------ANNFKTKLCENFTKGSCTFGERCHFAHG 220
DL+L + +S PP N P +NNFKTKLCENF KG+CTFGERCHFAHG
Sbjct: 182 KDLLLTL-QMSAPPKSN-QGGAGGPGGHGHHGSNNFKTKLCENFAKGTCTFGERCHFAHG 355
Query: 221 TDELRKPGM 229
ELRK G+
Sbjct: 356 PAELRK*GV 382
Score = 38.1 bits (87), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 33 KTRLCNKFNTAEG-CKFGDKCHFAHGEWEL 61
KT+LC F A+G C FG++CHFAHG EL
Sbjct: 284 KTKLCENF--AKGTCTFGERCHFAHGPAEL 367
>TC8117 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partial (41%)
Length = 766
Score = 151 bits (381), Expect = 1e-37
Identities = 76/129 (58%), Positives = 93/129 (71%), Gaps = 1/129 (0%)
Frame = +3
Query: 1 MINVGSSPAIPPIGRNPNVPQS-FPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEW 59
M+N+ S PP RN P P+GS+P V KTR+CNKFNTAEGCKFGDKCHFAHGEW
Sbjct: 396 MMNLAPSAQAPP--RNVAAPPPPVPNGSTPAV-KTRICNKFNTAEGCKFGDKCHFAHGEW 566
Query: 60 ELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAII 119
ELG+ P+++D R +G + +GGR+EPPP G A GFG +ATA +S+ A+LAGAII
Sbjct: 567 ELGKHIAPSFDDHRPIGHAPAGRIGGRMEPPP---GPATGFGANATAKISVEASLAGAII 737
Query: 120 GKNDVNSKQ 128
GK VNSKQ
Sbjct: 738 GKGGVNSKQ 764
Score = 42.4 bits (98), Expect = 7e-05
Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 5/68 (7%)
Frame = +3
Query: 164 SAMVHDLILNVSSVSGPPGKNITSQTSAPANN----FKTKLCENF-TKGSCTFGERCHFA 218
+A+ H ++N++ + P +N+ + N KT++C F T C FG++CHFA
Sbjct: 381 NAVAH--MMNLAPSAQAPPRNVAAPPPPVPNGSTPAVKTRICNKFNTAEGCKFGDKCHFA 554
Query: 219 HGTDELRK 226
HG EL K
Sbjct: 555 HGEWELGK 578
Score = 36.2 bits (82), Expect = 0.005
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +3
Query: 27 SSPPVAKTRLCNKFNTAEGCKFGDKCHFAH 56
SS +K++ C KF + GC FG+ CHF H
Sbjct: 273 SSGVGSKSKPCTKFFSTAGCPFGESCHFLH 362
Score = 29.3 bits (64), Expect = 0.59
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 197 KTKLCENF-TKGSCTFGERCHFAH 219
K+K C F + C FGE CHF H
Sbjct: 291 KSKPCTKFFSTAGCPFGESCHFLH 362
>TC16853 similar to UP|Q93ZP3 (Q93ZP3) At1g32359/F27G20.10, partial (20%)
Length = 722
Score = 46.2 bits (108), Expect = 5e-06
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +1
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGR 63
KTR+CNK+ C FG+KCHFAHG EL R
Sbjct: 58 KTRICNKWEMTGYCPFGNKCHFAHGATELHR 150
Score = 42.4 bits (98), Expect = 7e-05
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 194 NNFKTKLCENFTK-GSCTFGERCHFAHGTDELRKPG 228
+N+KT++C + G C FG +CHFAHG EL + G
Sbjct: 49 SNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYG 156
>BI417981
Length = 477
Score = 45.1 bits (105), Expect = 1e-05
Identities = 26/64 (40%), Positives = 34/64 (52%), Gaps = 12/64 (18%)
Frame = +3
Query: 176 SVSGPPGKNI--TSQTSAPANN----------FKTKLCENFTKGSCTFGERCHFAHGTDE 223
S S PP K +S TS+ A+ FKTKLC F G+C + C+FAH +E
Sbjct: 132 SGSEPPSKKARGSSATSSSASQERSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIEE 311
Query: 224 LRKP 227
LR+P
Sbjct: 312 LRRP 323
>TC16084 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;}, partial (29%)
Length = 889
Score = 44.7 bits (104), Expect = 1e-05
Identities = 32/105 (30%), Positives = 56/105 (52%), Gaps = 4/105 (3%)
Frame = +1
Query: 103 SATATVSINATLAGAIIGKNDVNSKQICHITGAKLSI-REHDSDPNLRN--IELEGSFDQ 159
+++ + I + G IIGK K + +GAK+ + R+ D+DPN N +EL GS +
Sbjct: 310 TSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEA 489
Query: 160 IKQASAMVHDLILNV-SSVSGPPGKNITSQTSAPANNFKTKLCEN 203
I A ++++++ S SG G+ +T Q S A+ F ++ N
Sbjct: 490 IADAEKLINEVLAEAESGGSGMIGRRLTGQ-SGSADEFSMQIPNN 621
>AV407717
Length = 406
Score = 35.0 bits (79), Expect = 0.011
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 196 FKTKLCENFTK--GSCTFGERCHFAHGTDELR 225
+KT LC F GSC+ G C FAH +ELR
Sbjct: 205 WKTSLCSYFRSHNGSCSHGTTCRFAHSEEELR 300
Score = 33.5 bits (75), Expect = 0.031
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 30 PVAKTRLCNKFNTAEG-CKFGDKCHFAHGEWEL 61
P+ KT LC+ F + G C G C FAH E EL
Sbjct: 199 PLWKTSLCSYFRSHNGSCSHGTTCRFAHSEEEL 297
>AV776901
Length = 588
Score = 33.9 bits (76), Expect = 0.024
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +1
Query: 196 FKTKLCENFTKGSCTFGERCHFAHGTDELRK 226
FKT+LC + +G C C FAHG ELR+
Sbjct: 259 FKTRLCVLYQRGRCN-RHNCSFAHGNAELRR 348
>TC12272
Length = 627
Score = 33.9 bits (76), Expect = 0.024
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +1
Query: 196 FKTKLCENFTKGSCTFGERCHFAHGTDELRK 226
FKT+LC + +G C C FAHG ELR+
Sbjct: 280 FKTRLCVLYQRGRCN-RHNCSFAHGNAELRR 369
>TC14620
Length = 1260
Score = 33.1 bits (74), Expect = 0.041
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 194 NNFKTKLCENFTKGSCTFGERCHFAHGTDE 223
+++ C + KG C G+ CHFAHG E
Sbjct: 288 HHYSATPCPDLRKGYCNRGDSCHFAHGVFE 377
Score = 28.9 bits (63), Expect = 0.78
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = +3
Query: 46 CKFGDKCHFAHGEWE 60
C GD CHFAHG +E
Sbjct: 333 CNRGDSCHFAHGVFE 377
>TC13404 similar to GB|AAP68215.1|31711718|BT008776 At1g51580 {Arabidopsis
thaliana;}, partial (11%)
Length = 592
Score = 32.7 bits (73), Expect = 0.054
Identities = 23/97 (23%), Positives = 43/97 (43%)
Frame = +1
Query: 76 GQMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGA 135
G +SS+ R P +G +S+T ++I + G+N+ N I I+GA
Sbjct: 121 GTADTSSLSSRTGTPGN-NGNPFQNAISSTVEITIPHMYLSHVYGENNSNLIDIRQISGA 297
Query: 136 KLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLIL 172
+ + + + + + G+ DQI A ++ IL
Sbjct: 298 NVVVHDPKAGATEGLVSVSGAPDQINAAQCLIQAFIL 408
>TC17221 weakly similar to UP|Q84ZX0 (Q84ZX0) HEN4, partial (9%)
Length = 481
Score = 32.0 bits (71), Expect = 0.092
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 103 SATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQ 162
+ T + + ++ G+N N ++ I+GAK+ + + + R I + GS D+ +
Sbjct: 14 NTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVISGSPDETQA 193
Query: 163 ASAMVHDLILNVS 175
A +++ IL+ S
Sbjct: 194 AQSLLQSFILSGS 232
>AV772854
Length = 494
Score = 31.6 bits (70), Expect = 0.12
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Frame = -1
Query: 196 FKTKLCENFTKGS-CTFGERCHFAHGTDELRK 226
+KT++C G C +G RCHF H E K
Sbjct: 461 YKTEVCRMVLSGVVCPYGHRCHFRHALTEQEK 366
Score = 28.1 bits (61), Expect = 1.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 30 PVAKTRLCNKFNTAEGCKFGDKCHFAH 56
P KT +C + C +G +CHF H
Sbjct: 467 PRYKTEVCRMVLSGVVCPYGHRCHFRH 387
>BP063686
Length = 514
Score = 31.6 bits (70), Expect = 0.12
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = -2
Query: 201 CENFTKGSCTFGERCHFAHGTDE 223
C +F KG+C G+ C +AHG E
Sbjct: 207 CPDFRKGACRRGDMCEYAHGVFE 139
>TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization 1 homolog a
{Mus musculus;}, partial (3%)
Length = 2631
Score = 31.2 bits (69), Expect = 0.16
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 201 CENFTKGSCTFGERCHFAHGTDE 223
C F KG+C G+ C +AHG E
Sbjct: 905 CPEFRKGACQKGDSCEYAHGVFE 973
Score = 25.8 bits (55), Expect = 6.6
Identities = 13/41 (31%), Positives = 19/41 (45%)
Frame = +2
Query: 20 PQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWE 60
P+ +P P C +F C+ GD C +AHG +E
Sbjct: 875 PRKYPYSCVP-------CPEFRKG-ACQKGDSCEYAHGVFE 973
>TC18011
Length = 542
Score = 30.4 bits (67), Expect = 0.27
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 201 CENFTKGSCTFGERCHFAHGTDE 223
C +F KGSC + C +AHG E
Sbjct: 426 CPDFRKGSCKKADACEYAHGVFE 494
>TC17101 similar to UP|PIN4_MOUSE (Q9CWW6) Peptidyl-prolyl cis-trans
isomerase NIMA-interacting 4 (Rotamase Pin4) (PPIase
Pin4) , partial (50%)
Length = 828
Score = 29.6 bits (65), Expect = 0.45
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 6 SSPAIPPIGRNPNVPQSFPDGSS 28
+ PAI P+G +P P FPDG S
Sbjct: 481 NGPAIFPLGNHPRSPPFFPDGHS 413
>TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (81%)
Length = 1263
Score = 28.9 bits (63), Expect = 0.78
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 182 GKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAH----GTDELRK 226
G+ I ++ S P +F+ C + + SC G C+F H G D RK
Sbjct: 485 GRPIIAEFS-PVTDFREATCRQYEENSCNRGGYCNFMHVKLIGRDLRRK 628
>TC10891 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein HUA1, partial
(15%)
Length = 581
Score = 28.5 bits (62), Expect = 1.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 201 CENFTK-GSCTFGERCHFAHGTD 222
C+ + K G C FGERC F H D
Sbjct: 111 CDFYMKNGECKFGERCKFHHPID 179
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,577,419
Number of Sequences: 28460
Number of extensions: 70687
Number of successful extensions: 424
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of query: 229
length of database: 4,897,600
effective HSP length: 87
effective length of query: 142
effective length of database: 2,421,580
effective search space: 343864360
effective search space used: 343864360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC149471.8