BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149471.17 - phase: 0 /pseudo
(1391 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 229 3e-60
BP075943 168 6e-42
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 131 6e-31
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 127 9e-30
AU088980 125 5e-29
BP066094 119 1e-28
BP054557 107 1e-23
AV424544 104 8e-23
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 101 7e-22
BP084332 91 2e-18
AV410378 89 6e-18
BP033602 86 4e-17
BP063694 81 1e-15
BP043850 81 1e-15
BP057233 74 2e-13
AV766088 73 4e-13
AV427921 67 3e-11
BP058111 66 4e-11
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 63 4e-10
AV766665 61 1e-09
>AV780009
Length = 529
Score = 229 bits (583), Expect = 3e-60
Identities = 106/162 (65%), Positives = 130/162 (79%)
Frame = -1
Query: 1208 AALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWR 1267
AA RVLRY+KG P +GLFF +S + LQ +SD+DWAGC DTRRS++G FLG SLISWR
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1268 TKKQITVSRSSSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANP 1327
TKKQ TVSRSSSEAEYRALA+ CE+QW+ YL Q + ++ P L+CDNQSALHIA NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 1328 VFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFFTK 1369
FHERTKH+E+DCH+VR K+QAG++ LLP+S+ Q+AD FTK
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK 41
>BP075943
Length = 547
Score = 168 bits (425), Expect = 6e-42
Identities = 89/168 (52%), Positives = 112/168 (65%), Gaps = 1/168 (0%)
Frame = -3
Query: 1065 TSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGIS 1124
+S SFT LL+YVDD+++AG+ + E +KS L F+IKDLG+ KYFLG+E+A S GI
Sbjct: 542 SSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 363
Query: 1125 LCQRKYCLDLLADSGTIDSKP-VSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYLNTT 1183
L QRKY L L++DSG +P + +S L ++ DI SYRR+VGRLLYLNTT
Sbjct: 362 LNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTT 183
Query: 1184 RPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSS 1231
RPDITF QLSQFLS PT H L+YL G PG GLF+P +SS
Sbjct: 182 RPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSS 39
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 131 bits (330), Expect = 6e-31
Identities = 58/98 (59%), Positives = 78/98 (79%)
Frame = +1
Query: 1294 QWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILK 1353
QW+ YLLQD+ + + ++YCDN SA HIAANPVFHERTKH+EIDCHIVRE++Q G++
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIH 180
Query: 1354 LLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
LLP+SS + +AD +TKAL P+ F+ + +K+GLINI P
Sbjct: 181 LLPISSSEPLADIYTKALSPQNFHQICAKLGLINICSP 294
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 127 bits (320), Expect = 9e-30
Identities = 59/99 (59%), Positives = 75/99 (75%)
Frame = +1
Query: 1291 CELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAG 1350
CEL W+ Y+LQD+ + +LYCD+QSA HIA N VFHERTKHL+IDCH+VREK+QA
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1351 ILKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIY 1389
+ LLP+SS DQ AD TK L PF+ L+SK+G++NIY
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNIY 297
>AU088980
Length = 360
Score = 125 bits (314), Expect = 5e-29
Identities = 59/115 (51%), Positives = 80/115 (69%)
Frame = +2
Query: 640 NGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQ 699
N VERKH+HILNV RAL+F S LP + W++A+ HA +LIN +P+P+L Q PY L++
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 700 LPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREI 754
P L KVFG LCY+STL + KL PRARK +FLG+K+G G+ + D+ + I
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDLPTTXI 346
>BP066094
Length = 532
Score = 119 bits (299), Expect(2) = 1e-28
Identities = 62/149 (41%), Positives = 94/149 (62%), Gaps = 1/149 (0%)
Frame = +2
Query: 968 AKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQEDVYMLIPPGIKSNK-PNQVCKLQK 1026
+K IRL+I+ S HN LHQ++V +AFL+G + E+VY+ PPG + K + + KL+K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 1027 SLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSL 1086
SLYGLKQA R WYE+L+S L + ++ D +LF K I+ +YVDDII +
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1087 TEFTYIKSVLDASFKIKDLGQLKYFLGIE 1115
+ ++ A F+++ +G+LKYFLGI+
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 25.0 bits (53), Expect(2) = 1e-28
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 952 YNQIEGLDYFDTYSPVAK 969
Y+Q G+DY +T++PVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>BP054557
Length = 538
Score = 107 bits (267), Expect = 1e-23
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 9/194 (4%)
Frame = -2
Query: 340 LLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPA 399
LLD+GA H+ NL F + ++ PV +S+PN + A +V F+ F+L+ VLY P+
Sbjct: 537 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 358
Query: 400 FTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLY---------KYTP 450
F NLISV+ L +SL+ L C++Q+ +LK IG A++ GLY K+ P
Sbjct: 357 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKTIGAAEERGGLYAVIDPAVKAKHPP 178
Query: 451 SSCSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNII 510
+ ++ + VSH + CN LWH RLGH S ++L + +P I
Sbjct: 177 ---AEGNIKTQVSHFN---FCQFDCN---------LWHLRLGHTSSKKLAILQKNFPFIT 43
Query: 511 SSNNKDVCDLCHFA 524
CD CH A
Sbjct: 42 CKQITSPCDTCHMA 1
>AV424544
Length = 276
Score = 104 bits (260), Expect = 8e-23
Identities = 52/90 (57%), Positives = 66/90 (72%)
Frame = +3
Query: 1041 KLTSVLSHHHYIQASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF 1100
KL+S L YIQ++ DHSLF K +SFT++LVYVDD+I+AG+ L E +K+ LD F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 1101 KIKDLGQLKYFLGIEVAHSKLGISLCQRKY 1130
+IKDLG LKYFLG+EVA S G+ L QRKY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 101 bits (252), Expect = 7e-22
Identities = 50/84 (59%), Positives = 61/84 (72%)
Frame = +3
Query: 1288 SATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKV 1347
S CE W+ Y L D+ I+ L V+YCDN+SALH+AAN VFH+RT+++EIDCHIV KV
Sbjct: 9 SHPCEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKV 188
Query: 1348 QAGILKLLPVSSQDQVADFFTKAL 1371
GIL LL V S DQVAD FTK +
Sbjct: 189 LFGILHLLHVPSSDQVADVFTKTI 260
>BP084332
Length = 368
Score = 90.5 bits (223), Expect = 2e-18
Identities = 43/113 (38%), Positives = 69/113 (61%)
Frame = +2
Query: 1271 QITVSRSSSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFH 1330
Q T++ S++EAEY + A + ++ W+ + L+D I +P+ YCDN +A+ ++ NP+ H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPI-YCDNTAAISLSKNPILH 208
Query: 1331 ERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSKM 1383
R KH+E+ H +R+ VQ G+L L V + Q AD FTK L FN +L +
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>AV410378
Length = 358
Score = 88.6 bits (218), Expect = 6e-18
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 11/107 (10%)
Frame = +1
Query: 823 PVVSPASRTSTRQTTTPSYLQDYVCNNIHTSP-----------YPINNYISHHNLSNNYS 871
P R S R PSYLQDY C ++ YP++ IS+H L+ +Y
Sbjct: 28 PEEGNVQRISNRVRRPPSYLQDYHCTLAASTTVSKVPSSAGISYPLSKVISYHKLTPSYR 207
Query: 872 SFVMSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLP 918
+F+M++ T +EP Y+EA KH+CW++AM E++ALE+ TW LVD P
Sbjct: 208 AFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKP 348
>BP033602
Length = 533
Score = 85.9 bits (211), Expect = 4e-17
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Frame = +3
Query: 412 ESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVA 471
+S+ +L F + C T KMIG AK DGLY + + +K+ +
Sbjct: 93 DSVIINLSFIQS*CCYSGT*Q-KMIGSAKMKDGLYYFE----------DTFRNKAAQGLC 239
Query: 472 TISCNSSSSIPSNALWHFRLGHLSHQRL-HSMSLLYPNIISSNNKDVCDLCHFAKHKHLP 530
+SC S LWH RLGH + Q L H L+ N+ S+ + C+ C AK++ P
Sbjct: 240 GMSCTSVRD--QIMLWHNRLGHPNFQYLRHLFPDLFKNVNCSSLE--CESCVLAKNQRAP 407
Query: 531 FNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHS 572
+ S HAS F L+H D+WGP I + G R+F+T +DDH+
Sbjct: 408 YYSQPYHASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>BP063694
Length = 511
Score = 81.3 bits (199), Expect = 1e-15
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Frame = -2
Query: 477 SSSSIP--SNALWHFRLGHLSH---QRLHSMSLLYPNIISSNNKDVC-DLCHFAKHKHLP 530
+SS +P S LWH RLGH++ ++LH L ++ S K +C C AK K L
Sbjct: 393 TSSPLPRASFELWHSRLGHVNFDIIKQLHKHGCL--DVSSILPKPICCTSCQMAKSKRLV 220
Query: 531 FNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHV 590
F+ + AS +L+H D+ GP +AS+ G YF+ VDD SRF W LK K++ S +
Sbjct: 219 FHDNNKRASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVL 40
Query: 591 INFITMIQTQFHI 603
+ F ++ +F +
Sbjct: 39 LRFKVFMENRFSV 1
>BP043850
Length = 515
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/95 (42%), Positives = 60/95 (63%)
Frame = -1
Query: 1292 ELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGI 1351
E+ W+ LL ++ + L+ DN SA+ IAANPV+HE T+H+E+DCH VRE +
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1352 LKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLI 1386
+ L VS+ Q+AD TK+L + N L+SK+ L+
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLV 228
>BP057233
Length = 473
Score = 73.9 bits (180), Expect = 2e-13
Identities = 35/80 (43%), Positives = 53/80 (65%)
Frame = -2
Query: 1308 PKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFF 1367
P+ P+L+CDN SA +A+NPV H R+KH+EID H +R++V + + V + DQ+AD
Sbjct: 460 PRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCL 281
Query: 1368 TKALLPKPFNILLSKMGLIN 1387
TK L F+ L K+G+I+
Sbjct: 280 TKPLSHTRFSQLRDKLGVIH 221
>AV766088
Length = 501
Score = 72.8 bits (177), Expect = 4e-13
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = -3
Query: 483 SNALWHFRLGHLSHQRLHSM-SLLYPNIISSNNKDVCDLCHFAKHKHLPFNSSISHASTN 541
+ +LWH RLGH S L + S + + N VC+ C F KH LPF SS +
Sbjct: 316 AQSLWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMP 137
Query: 542 FELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEV 586
F++LH D+W ++S GHR+++ +DD + FLW L +K++V
Sbjct: 136 FDILHSDLWTSPVLSSA-GHRFYVLFLDDFTDFLWTFPLSNKSQV 5
>AV427921
Length = 284
Score = 66.6 bits (161), Expect = 3e-11
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +1
Query: 636 TPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFV 695
TPQQNG ERK++ ILN+ R+LL S LP SF A++ ++ ++NR PT ++ N P
Sbjct: 22 TPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEA 201
Query: 696 LHHQLPALNLFKVFGCLCYA 715
+ PA++ F++ CL YA
Sbjct: 202 WSGRQPAVDHFRISRCLAYA 261
>BP058111
Length = 570
Score = 65.9 bits (159), Expect = 4e-11
Identities = 52/196 (26%), Positives = 87/196 (43%), Gaps = 14/196 (7%)
Frame = -1
Query: 365 VYVSLPNKTCVL-----VQYAGTVSFTSNFYLSHVL-YSPAFT--HNLISVAKLCESLSY 416
V + +PN+ +L +Q+ G + Y + L + P H +I + L + +
Sbjct: 531 VMILMPNRLVLLSLKSIIQHRGLLLSNRRLYWLYCLRFLPVLVRLHQVIRLLLL*QKMVL 352
Query: 417 SLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCS------SNSVFSSVSHKSCNVV 470
++H Q+ +LKMIG A++ LY + +++ + VSH +
Sbjct: 351 AIH--------QERPTLKMIGAAEERGDLYALIDPAVKVKHPPVEDNIKTQVSHFN---F 205
Query: 471 ATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDVCDLCHFAKHKHLP 530
CN LWH RLGH S ++L + +P I CD CH AK K L
Sbjct: 204 CQFDCN---------LWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAKQKKLS 52
Query: 531 FNSSISHASTNFELLH 546
F +S++ +S F+L+H
Sbjct: 51 FPNSVTLSSEIFDLIH 4
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 62.8 bits (151), Expect = 4e-10
Identities = 44/139 (31%), Positives = 67/139 (47%), Gaps = 10/139 (7%)
Frame = +2
Query: 1051 YIQASSDHSLFVKK-TSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLK 1109
Y + SSDH + K+ + F ILL+YVDD+++ G + +K+ L F +KDLG
Sbjct: 29 YNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 208
Query: 1110 YFLGIEVAHSKLG--ISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPS---- 1163
LG+++ + I L Q+ Y +L D P+STP + KL PS
Sbjct: 209 KILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSMIPSSEAE 388
Query: 1164 ---YADIPSYRRLVGRLLY 1179
+ +P Y VG L+Y
Sbjct: 389 RMEMSRVP-YASAVGSLMY 442
>AV766665
Length = 601
Score = 60.8 bits (146), Expect = 1e-09
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +3
Query: 1207 TAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISW 1266
T R+ YLK RG F + ++ GF+ AD+ G + R S G FL +L++W
Sbjct: 360 TFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTW 539
Query: 1267 RTKKQITVSRSSSEAEYRA 1285
R+K+Q ++RSS EAE RA
Sbjct: 540 RSKQQNIIARSSGEAELRA 596
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.133 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,380,958
Number of Sequences: 28460
Number of extensions: 543333
Number of successful extensions: 9996
Number of sequences better than 10.0: 531
Number of HSP's better than 10.0 without gapping: 5538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7603
length of query: 1391
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1289
effective length of database: 1,994,680
effective search space: 2571142520
effective search space used: 2571142520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC149471.17