TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149307.10 + phase: 0 /pseudo
         (114 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP056651                                                               46  8e-07
CN825682                                                               34  0.003
AV768875                                                               32  0.015
AV771945                                                               29  0.13
AV408185                                                               26  0.82
BP048060                                                               26  0.82
AV764826                                                               26  1.1
TC19275 similar to UP|Q94C19 (Q94C19) At1g26850/T2P11_4, partial...    25  1.4
BP059386                                                               25  1.4
TC11065 weakly similar to UP|Q8RDP8 (Q8RDP8) Histidinol-phosphat...    25  1.8
TC10653 similar to UP|O24517 (O24517) Unconventional myosin, par...    25  1.8
BF177506                                                               25  1.8
TC8091 homologue to UP|ACT3_SOLTU (P30167) Actin 58, partial (39%)     25  2.4
AV772546                                                               24  3.1
BP069580                                                               24  4.1
BP061768                                                               24  4.1
BP059885                                                               24  4.1
CB828089                                                               24  4.1
BP043359                                                               23  5.3
TC15790 similar to UP|Q9STE0 (Q9STE0) MAP3K epsilon 1 protein ki...    23  5.3

>BP056651 
          Length = 564

 Score = 46.2 bits (108), Expect = 8e-07
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +3

Query: 28  LVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQ 69
           L D P+ GR +TW R +G + S+LDRFL+S    ++W +C Q
Sbjct: 432 LDDIPLVGRKYTWVRSNGKARSRLDRFLVSHQWNTSWXDCAQ 557


>CN825682 
          Length = 626

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
 Frame = -3

Query: 18  IFNKFIDDSFLVDFPICGRLFTW---YRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQS 74
           +F  F+D + L+D  + G  FTW    R    +  +LDR L++      +PN   +AL  
Sbjct: 216 VFRDFLDGANLMDLELKGCRFTWLSNLRNGLVTKERLDRVLVNWTWRLDYPNATAMALPI 37

Query: 75  GLSDH 79
             SDH
Sbjct: 36  ISSDH 22


>AV768875 
          Length = 232

 Score = 32.0 bits (71), Expect = 0.015
 Identities = 14/36 (38%), Positives = 19/36 (51%)
 Frame = +1

Query: 7   RGSSFRQHDADIFNKFIDDSFLVDFPICGRLFTWYR 42
           RG  F  + A  F   +DD  L+D  + G  FTW+R
Sbjct: 106 RGGEFHPNRAQRFATVLDDCNLIDLGMVGGKFTWFR 213


>AV771945 
          Length = 400

 Score = 28.9 bits (63), Expect = 0.13
 Identities = 19/68 (27%), Positives = 30/68 (43%), Gaps = 2/68 (2%)
 Frame = +1

Query: 34  CGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQ-IALQSGLSDHVHMVLRVDEENW 91
           C +LF      G S   +L ++   D CYS W  CI+ I + S   D ++       ++ 
Sbjct: 190 CAKLFLCLVSQGVSNQQQLVKWKDWDGCYSFWATCIRHIPIYSATQDKMYQSEYTTSQSG 369

Query: 92  GPRPLRML 99
            P   R+L
Sbjct: 370 DPTYFRVL 393


>AV408185 
          Length = 352

 Score = 26.2 bits (56), Expect = 0.82
 Identities = 12/38 (31%), Positives = 21/38 (54%)
 Frame = +3

Query: 59 NCYSTWPNCIQIALQSGLSDHVHMVLRVDEENWGPRPL 96
          +C++   + I + L+S LSDH  +    +  N  PRP+
Sbjct: 15 SCFNDHQHHITVELRSDLSDHRDVHGGAEGRNTNPRPI 128


>BP048060 
          Length = 479

 Score = 26.2 bits (56), Expect = 0.82
 Identities = 16/70 (22%), Positives = 31/70 (43%)
 Frame = -2

Query: 27  FLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSDHVHMVLRV 86
           ++V    CGR+F W +  G  +  ++      NC  + P+ + +A  SG+   + +    
Sbjct: 373 YVVSGSDCGRIFIWKKKGGQLVRVMEADKHVVNCIESHPHTMVLA-SSGIEHDIQI---- 209

Query: 87  DEENWGPRPL 96
               W P+ L
Sbjct: 208 ----WTPKAL 191


>AV764826 
          Length = 578

 Score = 25.8 bits (55), Expect = 1.1
 Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
 Frame = +1

Query: 40  WYRGDGYSMSKLDR--FLLSDNCYSTWPNCIQIALQSGLSDHVHMVLR 85
           +YRG  YS+S  DR  F  SD  ++     I+ A+++G     HM  R
Sbjct: 424 YYRGSEYSLSSSDRADFCTSDPNHNVVAQ-IRHAMRTGACGRCHMCTR 564


>TC19275 similar to UP|Q94C19 (Q94C19) At1g26850/T2P11_4, partial (18%)
          Length = 664

 Score = 25.4 bits (54), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 37  LFTWYRGDGYSMSKLDRFLLSDNCYSTW 64
           LFT++   GY M +    LLS NC+S W
Sbjct: 476 LFTYFFERGY-MQRQVLCLLSANCHSNW 556


>BP059386 
          Length = 410

 Score = 25.4 bits (54), Expect = 1.4
 Identities = 14/38 (36%), Positives = 18/38 (46%)
 Frame = -3

Query: 33  ICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQI 70
           I G ++ W      SM KL   L SD+   TW  CI +
Sbjct: 219 IKGGIYIWLHLICLSM*KLKSALYSDSESVTWHTCIHV 106


>TC11065 weakly similar to UP|Q8RDP8 (Q8RDP8) Histidinol-phosphatase  ,
          partial (4%)
          Length = 508

 Score = 25.0 bits (53), Expect = 1.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 60 CYSTWPNCIQIALQ 73
          CY TWP+C+   LQ
Sbjct: 6  CYPTWPHCVSH*LQ 47


>TC10653 similar to UP|O24517 (O24517) Unconventional myosin, partial (15%)
          Length = 1173

 Score = 25.0 bits (53), Expect = 1.8
 Identities = 10/35 (28%), Positives = 18/35 (50%), Gaps = 5/35 (14%)
 Frame = +3

Query: 36  RLFTWYRGDGYSMSKLDRFLLSDNC-----YSTWP 65
           ++F +  G GY   ++   +L D+C     +S WP
Sbjct: 921 KIFHFKEGQGYFFFRISELVLHDHCHLSLSWSIWP 1025


>BF177506 
          Length = 447

 Score = 25.0 bits (53), Expect = 1.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 52  DRFLLSDNCYSTW 64
           D F  SD CYSTW
Sbjct: 241 DPFSYSDGCYSTW 279


>TC8091 homologue to UP|ACT3_SOLTU (P30167) Actin 58, partial (39%)
          Length = 640

 Score = 24.6 bits (52), Expect = 2.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 53  RFLLSDNCYSTWPNCIQIALQSGLSDHVHMVLRVD 87
           R +  DNC+  W   + + L   L   VH++L  D
Sbjct: 462 RVVEEDNCFIPWEEVLLVTLSF*LLLSVHVILLSD 566


>AV772546 
          Length = 526

 Score = 24.3 bits (51), Expect = 3.1
 Identities = 11/32 (34%), Positives = 18/32 (55%)
 Frame = -2

Query: 52  DRFLLSDNCYSTWPNCIQIALQSGLSDHVHMV 83
           +R   S+ C+  W N I +   +G +DHV +V
Sbjct: 420 NRMSFSNRCF--WTNAISLWTSTGDADHVMIV 331


>BP069580 
          Length = 483

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 13/41 (31%), Positives = 22/41 (52%)
 Frame = +1

Query: 55 LLSDNCYSTWPNCIQIALQSGLSDHVHMVLRVDEENWGPRP 95
          LLS   Y  WP+C+ + + +  +DH    L  +E  + P+P
Sbjct: 19 LLSHRLYP-WPSCLFLPINTQSNDH*RKYLN-NECTYDPQP 135


>BP061768 
          Length = 364

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 58  DNCYSTWP 65
           DNCYS WP
Sbjct: 281 DNCYSXWP 258


>BP059885 
          Length = 399

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (49%), Gaps = 7/32 (21%)
 Frame = -1

Query: 80  VHMVLRVDEENWGPRPLR-------MLKCWAN 104
           V M+  + E  WG  PLR       M++CW +
Sbjct: 321 VEMLCLLVEHGWGGGPLRIVA*LWLMIECWVD 226


>CB828089 
          Length = 511

 Score = 23.9 bits (50), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (53%)
 Frame = -3

Query: 9   SSFRQHDADIFNKFIDDSFLVDFP 32
           +SF   D  +F KFI  S+   FP
Sbjct: 371 TSFPNSDPSLFIKFIGSSYSTSFP 300


>BP043359 
          Length = 479

 Score = 23.5 bits (49), Expect = 5.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 27  FLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTW 64
           F V FPI       Y G GY +S  + F +     S+W
Sbjct: 225 FKVMFPILS-----YTGSGYDLSNANPFSIKPFTSSSW 323


>TC15790 similar to UP|Q9STE0 (Q9STE0) MAP3K epsilon 1 protein kinase,
           partial (7%)
          Length = 579

 Score = 23.5 bits (49), Expect = 5.3
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = +3

Query: 18  IFNKFIDDSFLVDFPICGRLFTWYRGDGYS 47
           IF   + + FL+ +P C  L  W RG  +S
Sbjct: 465 IFPA*VAEMFLLFWPNCIVLLVWMRGGKFS 554


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.142    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,328,399
Number of Sequences: 28460
Number of extensions: 32804
Number of successful extensions: 225
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of query: 114
length of database: 4,897,600
effective HSP length: 90
effective length of query: 24
effective length of database: 2,336,200
effective search space: 56068800
effective search space used: 56068800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)