BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149305.6 - phase: 0 /pseudo/partial
(543 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP033618 44 7e-05
TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, pa... 39 0.002
TC9364 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment... 33 0.15
TC10431 similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 protein, pa... 32 0.26
TC16608 weakly similar to UP|Q9FWS8 (Q9FWS8) F1B16.7 protein, pa... 30 1.00
TC16818 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, parti... 30 1.00
AV410494 30 1.00
BP037147 30 1.3
AV411427 28 3.8
AW163931 28 4.9
TC13335 28 4.9
TC10929 similar to UP|Q94AX6 (Q94AX6) AT3g23280/K14B15_17, parti... 28 4.9
BP077493 28 4.9
AV419683 27 6.5
BP045442 27 6.5
TC8813 weakly similar to UP|Q9XF65 (Q9XF65) RING-H2 zinc finger ... 27 8.4
AV406590 27 8.4
TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding ... 27 8.4
AW720496 27 8.4
>BP033618
Length = 467
Score = 43.9 bits (102), Expect = 7e-05
Identities = 19/47 (40%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Frame = +2
Query: 46 CCVCLGGRVENLFKCSG--CDRLFHADCLDVKENEVPNRNWYCLMCI 90
CC C G + L +C G C R +H C+D N VP WYC+ C+
Sbjct: 326 CCKCSRGGM--LMRCCGKRCQRSYHPSCVDPPFNYVPPXFWYCIQCV 460
>TC18788 weakly similar to UP|Q9SSA6 (Q9SSA6) F4P13.1 protein, partial (7%)
Length = 951
Score = 38.9 bits (89), Expect = 0.002
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 1/54 (1%)
Frame = +1
Query: 41 YPKDTCCVC-LGGRVENLFKCSGCDRLFHADCLDVKENEVPNRNWYCLMCICSK 93
+ + C VC L +++ C CD +H CL+ +P NWYC C+ K
Sbjct: 100 WDEGVCKVCGLDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGK 261
>TC9364 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment), partial
(20%)
Length = 565
Score = 32.7 bits (73), Expect = 0.15
Identities = 21/68 (30%), Positives = 29/68 (41%), Gaps = 3/68 (4%)
Frame = +2
Query: 57 LFKCSGCDRLFHADCLDVKENEVPN-RNWYCLMCIC--SKQLLVLQSYCNSQRKDDAKKN 113
+ +C GC FH C+D+ E ++YC C K L S S K D K+
Sbjct: 35 MVQCEGCSDWFHPACIDMTVEEAERLDHFYCEGCSAEGQKSLQNSHSATRSDTKVDTKRR 214
Query: 114 RKVSKDDS 121
R+ D S
Sbjct: 215 RRQ*CDSS 238
>TC10431 similar to UP|Q7XTF6 (Q7XTF6) OJ991214_12.11 protein, partial (38%)
Length = 582
Score = 32.0 bits (71), Expect = 0.26
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 416 CLTLDFLPQSAKASGVNPVSLVTVRKRCEL 445
CL L AK SGVNP +T+ KRC L
Sbjct: 269 CLCAVVLSNMAKMSGVNPKIAITIPKRCNL 358
>TC16608 weakly similar to UP|Q9FWS8 (Q9FWS8) F1B16.7 protein, partial (19%)
Length = 686
Score = 30.0 bits (66), Expect = 1.00
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Frame = +3
Query: 63 CDRLFHADCLDVKENEVPNRNWYCLMCICSKQLLVLQSYCNSQRKDDAK-KNRKVSKD 119
C +HA+CL+ EV + C +C+ + L + + + K KN K+SK+
Sbjct: 45 CGHAYHAECLETMTTEVDRYDPACPICMVGDKHLSKMFRKGLRAESEIKAKNHKISKN 218
>TC16818 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, partial (23%)
Length = 439
Score = 30.0 bits (66), Expect = 1.00
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = -1
Query: 21 SQEKFWVLQDLLSEDAAPQHYPKDTCCVCLGG 52
++ K W LSED+A + + + CC C GG
Sbjct: 172 TKPKRWKRTGFLSEDSAAEPWVSECCCCCGGG 77
>AV410494
Length = 398
Score = 30.0 bits (66), Expect = 1.00
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 3/54 (5%)
Frame = +2
Query: 43 KDTCCVCLGGRVENLFKCSGCDRLFHADCLDVKENEVPNRN---WYCLMCICSK 93
+D C +C G L GC + +H C VK +E R+ W C +C+K
Sbjct: 143 EDVCFICFDGGSLVLCDRRGCPKAYHPSC--VKRDEAFFRSKAKWNCGWHLCTK 298
>BP037147
Length = 585
Score = 29.6 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 38 PQHYPKDTCCVCLGGRVENLFKCSGCDRLFHADCLDVKENEVPNRNW 84
P+H CV L + GC+ L HA+ ++E+ PNR+W
Sbjct: 414 PKHTDFSEICV--------LLQSVGCNGLLHAEQFLIRESLQPNRDW 298
>AV411427
Length = 425
Score = 28.1 bits (61), Expect = 3.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 46 CCVCLGGRVEN-LFKCSGCDRLFHADCLD 73
CC+CL N + C LFH DC+D
Sbjct: 334 CCICLAKYENNDELRELPCSHLFHKDCVD 420
>AW163931
Length = 392
Score = 27.7 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = +2
Query: 416 CLTLDFLPQSAKASGVNPVSLVTVRKRC 443
CL +AK SG++P +T+ KRC
Sbjct: 251 CLCAVLXSNTAKMSGIDPXIAITIPKRC 334
>TC13335
Length = 517
Score = 27.7 bits (60), Expect = 4.9
Identities = 14/44 (31%), Positives = 21/44 (46%)
Frame = -2
Query: 109 DAKKNRKVSKDDSTFSNHEIVQQLLLNYFQDVTSADDLHHFICW 152
D +KN+ +S D S Q L++ F + D HHF+ W
Sbjct: 261 DEEKNKIMSYDH*VSSQQL*PQPLMVESFSGLHLQ*DFHHFLAW 130
>TC10929 similar to UP|Q94AX6 (Q94AX6) AT3g23280/K14B15_17, partial (16%)
Length = 783
Score = 27.7 bits (60), Expect = 4.9
Identities = 19/69 (27%), Positives = 29/69 (41%), Gaps = 9/69 (13%)
Frame = +2
Query: 30 DLLSEDAAPQHYPKD---------TCCVCLGGRVENLFKCSGCDRLFHADCLDVKENEVP 80
D+ S +A + P++ TC +CL E C C + A C+ NEV
Sbjct: 194 DISSSSSAVEKLPEEGQSAGEIGSTCVICLDAPAEGA--CIPCGHV--AGCMSCL-NEVK 358
Query: 81 NRNWYCLMC 89
+ W C +C
Sbjct: 359 TKKWGCPVC 385
>BP077493
Length = 375
Score = 27.7 bits (60), Expect = 4.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 470 LPYVLVLHAFCLVDPTLCAPASNPSQF 496
+PY+L+L + C + LC P SN S F
Sbjct: 255 IPYLLLLTSPCKLHENLCIPTSNCSIF 335
>AV419683
Length = 399
Score = 27.3 bits (59), Expect = 6.5
Identities = 11/45 (24%), Positives = 18/45 (39%)
Frame = +3
Query: 19 ICSQEKFWVLQDLLSEDAAPQHYPKDTCCVCLGGRVENLFKCSGC 63
+C + F +D + Y D C +C G ++ F C C
Sbjct: 132 VCMGKYFCATCKFFDDDISKNQYHCDECGICRIGGKDHFFHCKRC 266
>BP045442
Length = 488
Score = 27.3 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 42 PKDTCCVCLGG-RVENLFKCSGCDRLFHADCLD 73
P+ C VCL E+ C C LFH CL+
Sbjct: 449 PEHECSVCLTKFEPESEINCLPCGHLFHKACLE 351
>TC8813 weakly similar to UP|Q9XF65 (Q9XF65) RING-H2 zinc finger protein
ATL6, partial (24%)
Length = 495
Score = 26.9 bits (58), Expect = 8.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +1
Query: 46 CCVCLGG--RVENLFKCSGCDRLFHADCLD 73
C VCL E L CD +FH +C+D
Sbjct: 376 CAVCLSEFEDAETLRLIPKCDHVFHTECID 465
>AV406590
Length = 406
Score = 26.9 bits (58), Expect = 8.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 459 EMNSNELEKHALPY---VLVLHAFCLVDPTLCAPA 490
E NS E+ KH L + + +LH+ C+ LC PA
Sbjct: 29 ESNSGEIIKHYLGHKRLIGILHSACVHRANLCDPA 133
>TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding protein A,
partial (9%)
Length = 562
Score = 26.9 bits (58), Expect = 8.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 449 CLLEKILQVDEMNSNELEKHALP----YVLVLHAFCLVDPTLCAPASNPS 494
CL L + + L++H L + L LHA CL D + C+ +S+ S
Sbjct: 404 CLHGLCLHAHPLQEHPLQEHPLHGLCLHGLCLHALCLHDLSSCSSSSSDS 255
>AW720496
Length = 583
Score = 26.9 bits (58), Expect = 8.4
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = +3
Query: 67 FHADCLDVKENEVP-----NRNWYCLMCICSKQLLVLQSYCNSQRKDDAKK--NRKVSKD 119
F A L EN VP N+N++ L ++++ + + +A+K N+K K
Sbjct: 198 FTALTLHTPEN*VPSLSLTNQNFFFLW*KAKVTVILVAASSRETSEQEAEKHQNKKQRKQ 377
Query: 120 DSTFSNHEIVQQLLLNYFQDVTSADDLHHFICWF 153
+ S+H LL + T++ H F+ +F
Sbjct: 378 TCSSSSHTHTPHLLPTQDHNQTTSKTFHLFLYFF 479
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,764,116
Number of Sequences: 28460
Number of extensions: 166623
Number of successful extensions: 1253
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of query: 543
length of database: 4,897,600
effective HSP length: 95
effective length of query: 448
effective length of database: 2,193,900
effective search space: 982867200
effective search space used: 982867200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149305.6