TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149305.4 - phase: 0 /partial
         (542 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14143 similar to UP|Q9ZP04 (Q9ZP04) Alpha-D-xylosidase precurs...    28  3.8
TC14142 weakly similar to UP|Q9S7Y7 (Q9S7Y7) Alpha-xylosidase pr...    28  4.9
AV422095                                                               27  6.4
TC14141 weakly similar to UP|Q9S7Y7 (Q9S7Y7) Alpha-xylosidase pr...    27  8.4

>TC14143 similar to UP|Q9ZP04 (Q9ZP04) Alpha-D-xylosidase precursor, partial
           (22%)
          Length = 1245

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = -2

Query: 274 PYLIALETDPLESNSKMAHHLLMNMH 299
           P L  ++T PLE  +K++HHL+  +H
Sbjct: 596 PNLYPMQTYPLEHLTKLSHHLV*QLH 519


>TC14142 weakly similar to UP|Q9S7Y7 (Q9S7Y7) Alpha-xylosidase precursor
           (AT1G68560/F24J5_10), partial (9%)
          Length = 771

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = -2

Query: 274 PYLIALETDPLESNSKMAHHLLMNMH 299
           P L  ++T PLE  +K++HHL+  +H
Sbjct: 182 PNLCPMQTYPLELLTKLSHHLV*QLH 105


>AV422095 
          Length = 462

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 272 CVPYLIALETDPLESNSKMAHHLLMN 297
           C+ +L ALE  P   +S   HHLL N
Sbjct: 385 CLTHLRALELHPSRLSSSFFHHLLQN 308


>TC14141 weakly similar to UP|Q9S7Y7 (Q9S7Y7) Alpha-xylosidase precursor
           (AT1G68560/F24J5_10), partial (8%)
          Length = 643

 Score = 26.9 bits (58), Expect = 8.4
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = -3

Query: 274 PYLIALETDPLESNSKMAHHLLMNMH 299
           P L  ++T PLE  +K++HHL+  +H
Sbjct: 158 PNLDPMQTYPLELLTKLSHHLV*QLH 81


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,548,495
Number of Sequences: 28460
Number of extensions: 113591
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of query: 542
length of database: 4,897,600
effective HSP length: 95
effective length of query: 447
effective length of database: 2,193,900
effective search space: 980673300
effective search space used: 980673300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)