TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149305.10 + phase: 0 /pseudo
         (55 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12666 homologue to UP|Q9LF33 (Q9LF33) UDP-glucose dehydrogenas...    69  1e-13
TC14350 similar to UP|PSAL_SPIOL (Q41385) Photosystem I reaction...    26  1.8
TC14933 homologue to UP|TCMO_GLYEC (Q96423) Trans-cinnamate 4-mo...    24  7.0

>TC12666 homologue to UP|Q9LF33 (Q9LF33) UDP-glucose dehydrogenase-like
           protein, partial (38%)
          Length = 675

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 33/55 (60%), Positives = 39/55 (70%)
 Frame = +1

Query: 1   MAAIALKFTSTDVTVVDITKSRIVAWYNDQIPIYQPGFDGLVKQCRIKNLFFGTN 55
           MA IALK    +V VVDI   RI AW +D +PIY+PG D +VKQCR KNLFF T+
Sbjct: 181 MAVIALKCPEIEVVVVDIATPRINAWNSDHLPIYEPGLDDVVKQCRGKNLFFSTD 345


>TC14350 similar to UP|PSAL_SPIOL (Q41385) Photosystem I reaction center
           subunit XI, chloroplast precursor (PSI-L) (PSI subunit
           V), partial (94%)
          Length = 1035

 Score = 25.8 bits (55), Expect = 1.8
 Identities = 9/26 (34%), Positives = 16/26 (60%)
 Frame = +2

Query: 18  ITKSRIVAWYNDQIPIYQPGFDGLVK 43
           +T S +VAWY   +P Y+   + L++
Sbjct: 260 VTSSPLVAWYLSNLPAYRTAVNPLLR 337


>TC14933 homologue to UP|TCMO_GLYEC (Q96423) Trans-cinnamate 4-monooxygenase
            (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H)
           (Cytochrome P450 73) , partial (57%)
          Length = 917

 Score = 23.9 bits (50), Expect = 7.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 27  YNDQIPIYQPGFDGLVKQCR 46
           Y D IPI +P  +G +K C+
Sbjct: 727 YGDFIPILRPFLNGYLKVCK 786


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 835,816
Number of Sequences: 28460
Number of extensions: 6911
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of query: 55
length of database: 4,897,600
effective HSP length: 31
effective length of query: 24
effective length of database: 4,015,340
effective search space: 96368160
effective search space used: 96368160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)