BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149305.1 + phase: 0 /pseudo
(146 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 25 0.79
TC19521 similar to UP|O22526 (O22526) Cation-chloride co-transpo... 28 0.82
TC11976 similar to GB|AAP12856.1|30017245|BT006207 At3g02340 {Ar... 28 0.82
BI417786 27 1.4
TC8230 homologue to UP|Q9FLF0 (Q9FLF0) 40S ribosomal protein S9,... 27 1.4
TC8844 similar to UP|Q9FNI7 (Q9FNI7) Glucosyltransferase-like pr... 27 1.8
TC8231 homologue to UP|Q9FLF0 (Q9FLF0) 40S ribosomal protein S9,... 27 1.8
TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete 27 1.8
TC17426 similar to UP|Q9SX30 (Q9SX30) F24J5.9, partial (29%) 26 2.4
TC13638 26 2.4
BP043144 26 3.1
TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partia... 26 3.1
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 22 4.6
TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich... 25 5.3
TC15735 similar to UP|Q9SI52 (Q9SI52) Expressed protein (At2g038... 25 5.3
AV779190 25 5.3
AU251662 25 5.3
AV777955 25 7.0
AV426363 25 7.0
BP042644 25 7.0
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 25.0 bits (53), Expect(2) = 0.79
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +2
Query: 97 RPTQTPRKVRKSGPPMVGGDNDEDDDED 124
R ++ PR VR + + D DED+DED
Sbjct: 191 RRSRRPRNVRYNIDYLDEEDEDEDEDED 274
Score = 21.2 bits (43), Expect(2) = 0.79
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 116 DNDEDDDEDWAGGSRNISFSG 136
D DED+D+D G + + +G
Sbjct: 254 DEDEDEDDDERGREKEEAQAG 316
>TC19521 similar to UP|O22526 (O22526) Cation-chloride co-transporter,
partial (5%)
Length = 556
Score = 27.7 bits (60), Expect = 0.82
Identities = 14/43 (32%), Positives = 19/43 (43%), Gaps = 7/43 (16%)
Frame = -2
Query: 89 YTANIKRKRPTQTPRKVRKSGPPMVG-------GDNDEDDDED 124
Y I ++P P S P+ G GD D+DDD+D
Sbjct: 198 YLRPIGERKPPSAPAASTSSSAPISGFDDMVWIGDRDDDDDDD 70
>TC11976 similar to GB|AAP12856.1|30017245|BT006207 At3g02340 {Arabidopsis
thaliana;}, partial (11%)
Length = 530
Score = 27.7 bits (60), Expect = 0.82
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 52 FNIGESQFSLPTS---PQELIQRYQEFKNALKEDTVDYSLYTANIKRKRPTQTPRKVRKS 108
F +GE LP S P + I + +N ++ A+ +R+R V++S
Sbjct: 9 FVVGEEVKPLPCSHRYPGDCIVPWLGIRNTCPVCRYEFPTDDADYERRR-------VQRS 167
Query: 109 GPPMVGGDNDEDDDEDWAGGS 129
+ D+D+DDD+D G S
Sbjct: 168 AQSL*SDDDDDDDDDDDDGVS 230
>BI417786
Length = 513
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -2
Query: 104 KVRKSGPPMVGGDNDEDDDEDWAGGSR 130
+VR G D+D+DDD+D GG R
Sbjct: 176 RVRDGGGHDDDDDDDDDDDDDEKGGKR 96
>TC8230 homologue to UP|Q9FLF0 (Q9FLF0) 40S ribosomal protein S9, complete
Length = 846
Score = 26.9 bits (58), Expect = 1.4
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 84 VDYSLYTANIKRKRPTQTPRKVRKSGPPMV-GGDNDEDDDE 123
+D+SL T+ + RP + RK +K+ GGD DE+D++
Sbjct: 532 IDFSL-TSPLGGGRPGRVKRKNQKAAAKKASGGDGDEEDED 651
>TC8844 similar to UP|Q9FNI7 (Q9FNI7) Glucosyltransferase-like protein
(AT5g22740/MDJ22_16), partial (55%)
Length = 1300
Score = 26.6 bits (57), Expect = 1.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 25 KSCIVSMMLDVSEPPKPGDVFSRQSIPFNIGESQFSLPTSPQELIQRYQEFKNALKEDTV 84
K C + D P+P F R++IPF +G + +L + + + ++E ++
Sbjct: 910 KHCEYVAIFDADFRPEPD--FLRRAIPFLVGNPELALVQARWRFVNSDECLLTRMQEMSL 1083
Query: 85 DY 86
DY
Sbjct: 1084DY 1089
>TC8231 homologue to UP|Q9FLF0 (Q9FLF0) 40S ribosomal protein S9, complete
Length = 872
Score = 26.6 bits (57), Expect = 1.8
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 84 VDYSLYTANIKRKRPTQTPRK-VRKSGPPMVGGDNDEDDDE 123
+D+SL T+ + RP + RK ++ + GGD DE+D++
Sbjct: 512 IDFSL-TSPLGGGRPGRVKRKNMKAAAKKAAGGDGDEEDED 631
>TC17927 UP|Q8GRY7 (Q8GRY7) bZIP with a Ring-finger motif, complete
Length = 1793
Score = 26.6 bits (57), Expect = 1.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 100 QTPRKVRKSGPPMVGGDNDEDDDEDWAGGSRNISFSGGRRSSLR 143
+T + K M G D+D+DD++D + + G R R
Sbjct: 706 KTRYESHKESSQMEGDDDDDDDEDDVDDLENEVKYGQGNRMKAR 837
>TC17426 similar to UP|Q9SX30 (Q9SX30) F24J5.9, partial (29%)
Length = 999
Score = 26.2 bits (56), Expect = 2.4
Identities = 20/73 (27%), Positives = 30/73 (40%), Gaps = 10/73 (13%)
Frame = +1
Query: 61 LPTSPQELIQRYQEFKNALKEDTVDYSLYTANIKRKRPTQT----------PRKVRKSGP 110
LP S + + Q + + L T DY+L + T T P K +++ P
Sbjct: 397 LPLSLELVTQAIEACRQQLSGTTTDYNLNNGQSECSGQTSTEDGPVFEEFFPMK-KRAAP 573
Query: 111 PMVGGDNDEDDDE 123
D D+DDDE
Sbjct: 574 DCDEKDEDDDDDE 612
>TC13638
Length = 546
Score = 26.2 bits (56), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 89 YTANIKRKRPTQTPRKVRKSGPPMV 113
++ NI R PT P +V +GPP+V
Sbjct: 212 FSLNIYRCFPTPEPNRVVTAGPPLV 286
>BP043144
Length = 439
Score = 25.8 bits (55), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (50%)
Frame = +1
Query: 93 IKRKRPTQTPRKVRKSGPPMVGGDNDEDDDEDWAGGSRNIS 133
IKR+R ++ PR V + D D + +AGG + +S
Sbjct: 73 IKRRRKSRNPRSEHWRWLVFVAAELDGGDHKAFAGGCKKLS 195
>TC18701 similar to UP|Q8GSW2 (Q8GSW2) Cellulose synthase, partial (28%)
Length = 969
Score = 25.8 bits (55), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 98 PTQTPRKVRKSGPPMVGGDNDEDDDED 124
P R R G P V GD+DE+D +D
Sbjct: 251 PQCKTRYKRLKGSPRVEGDDDEEDVDD 331
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 21.9 bits (45), Expect(2) = 4.6
Identities = 24/83 (28%), Positives = 35/83 (41%), Gaps = 2/83 (2%)
Frame = +3
Query: 44 VFSRQSIPFNIGESQFSLPTSPQEL-IQRYQEFKNALKEDTV-DYSLYTANIKRKRPTQT 101
V + +S P S + SP +L + R E N L+ V D +Y +P QT
Sbjct: 72 VAAMKSAPIITFSSDDVVVKSPNDLRLYRLIELHNGLQAWLVHDPEIYPDG--PPKPVQT 245
Query: 102 PRKVRKSGPPMVGGDNDEDDDED 124
+ + D DEDDD+D
Sbjct: 246 DNEEEEDDDEEED-DEDEDDDDD 311
Score = 21.6 bits (44), Expect(2) = 4.6
Identities = 7/21 (33%), Positives = 12/21 (56%)
Frame = +3
Query: 116 DNDEDDDEDWAGGSRNISFSG 136
+ D+DDD++ GS + G
Sbjct: 339 EEDDDDDDEEEEGSEEVEVEG 401
>TC17661 weakly similar to UP|Q09085 (Q09085) Hydroxyproline-rich
glycoprotein (HRGP) (Fragment), partial (8%)
Length = 417
Score = 25.0 bits (53), Expect = 5.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 111 PMVGGDNDEDDDEDWAGGSRNISFSGG 137
P +GG++D ++ D +GG SGG
Sbjct: 273 PAIGGNDDNNNGGDGSGGGGGDEGSGG 353
>TC15735 similar to UP|Q9SI52 (Q9SI52) Expressed protein
(At2g03890/T18C20.9), partial (22%)
Length = 1187
Score = 25.0 bits (53), Expect = 5.3
Identities = 14/39 (35%), Positives = 18/39 (45%)
Frame = -2
Query: 108 SGPPMVGGDNDEDDDEDWAGGSRNISFSGGRRSSLRNSR 146
S P V GD+ D ++ + S S G S RNSR
Sbjct: 310 SSPTSVRGDSSSLSDNNFLASKQTTSSSLGSSSPPRNSR 194
>AV779190
Length = 539
Score = 25.0 bits (53), Expect = 5.3
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +3
Query: 116 DNDEDDDEDWAGGSRN 131
D +EDDD+D+ G RN
Sbjct: 378 DENEDDDDDYFGTKRN 425
>AU251662
Length = 370
Score = 25.0 bits (53), Expect = 5.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 115 GDNDEDDDEDWAGGSRNISF 134
G D+DDDE W +S+
Sbjct: 102 GSRDDDDDEGWENSDPELSY 43
>AV777955
Length = 429
Score = 24.6 bits (52), Expect = 7.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 96 KRPTQTPRKVRKSGPPMVGGDNDEDDDEDWAGGSRNIS 133
K+ + K +K V + DEDD+ED G R S
Sbjct: 1 KKVLKKSAKKKKLAEVAVEDEEDEDDEEDDESGKRKPS 114
>AV426363
Length = 428
Score = 24.6 bits (52), Expect = 7.0
Identities = 8/30 (26%), Positives = 15/30 (49%)
Frame = +3
Query: 38 PPKPGDVFSRQSIPFNIGESQFSLPTSPQE 67
PP P + +P + S +++PT P +
Sbjct: 141 PPTPAQTPIQTPLPGTVDSSMYNIPTGPSD 230
>BP042644
Length = 440
Score = 24.6 bits (52), Expect = 7.0
Identities = 21/76 (27%), Positives = 33/76 (42%), Gaps = 10/76 (13%)
Frame = +2
Query: 63 TSPQELIQRYQEFKNALKEDTVDYSLYTANIKRKRPTQTPRKVRKSGPP----------M 112
++P+ + + KN + D VD + + P RKVR S P +
Sbjct: 215 SAPETSQVKKEGLKNVIYID-VDNDQVDDVVILESPEFVSRKVRGSCGPSRERSFTPQSV 391
Query: 113 VGGDNDEDDDEDWAGG 128
+ D D+DDD+D GG
Sbjct: 392 ISIDTDDDDDDDDDGG 439
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.329 0.143 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,551,427
Number of Sequences: 28460
Number of extensions: 32596
Number of successful extensions: 443
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of query: 146
length of database: 4,897,600
effective HSP length: 82
effective length of query: 64
effective length of database: 2,563,880
effective search space: 164088320
effective search space used: 164088320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC149305.1