TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149211.3 + phase: 0 
         (367 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-li...    30  0.49
TC14087 homologue to UP|Q9ZP90 (Q9ZP90) Ferritin, partial (78%)        28  1.8
TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, ...    28  3.1
TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%)           27  7.0
TC13289 weakly similar to UP|O22512 (O22512) Grr1, partial (11%)       27  7.0
TC14079                                                                26  9.2

>TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like, partial
           (42%)
          Length = 436

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 19/92 (20%)
 Frame = +2

Query: 158 NNKCSQATSEV-----DHTPT--EYMVIDTLELDSKSDPF-----MSKQEKKVK----RK 201
           NN CS ++S        H P   E   I  L  DS+S+P       S Q+ K +    R 
Sbjct: 77  NNLCSNSSSSSTSRTHQHHPNP*ESRAIHNLHQDSQSNPSS*PHQFSAQQLKPRPHHFRT 256

Query: 202 HRRKKLYYETEDLEFQKMP---EAYSATIEKY 230
           HR++ L ++T D+E  +      AYS     Y
Sbjct: 257 HRQRLLQFKTRDIELHQHTGPIAAYSVPYSSY 352


>TC14087 homologue to UP|Q9ZP90 (Q9ZP90) Ferritin, partial (78%)
          Length = 1120

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 15/66 (22%), Positives = 28/66 (41%)
 Frame = -1

Query: 187 SDPFMSKQEKKVKRKHRRKKLYYETEDLEFQKMPEAYSATIEKYWCQRYILFSRFDDGVK 246
           S  F   +EKK + +   KK   + +    +  P+      +K+W ++  L      G++
Sbjct: 238 SSSFSENKEKKKREQSS*KKKKKKKKQASLKHHPQQVREKTQKHWKKKEPLERNLKMGIQ 59

Query: 247 MDEEGW 252
             EE W
Sbjct: 58  RKEEKW 41


>TC9268 similar to UP|Q9LHE6 (Q9LHE6) Genomic DNA, chromosome 3, P1 clone:
           MZE19, partial (30%)
          Length = 805

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 85  EETLVDENLSGNQHEEYSAEIGVAAGNLVSDIA 117
           EE +VDE L+G+  E+ +  +G+ A     D+A
Sbjct: 565 EEVIVDELLAGHDAEQVNQALGLVADVAADDVA 467


>TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%)
          Length = 2554

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 15/51 (29%), Positives = 23/51 (44%), Gaps = 10/51 (19%)
 Frame = +2

Query: 228  EKYWCQRYILFSRFDDGVKM----------DEEGWFSVTPEIIAHHQASRC 268
            ++YWC    L+  F+ G+            D+EGW  +T     H  +SRC
Sbjct: 1526 KEYWC----LYYNFEKGMPTTWDKALAF*KDQEGWSLLTETPTCH*LSSRC 1666


>TC13289 weakly similar to UP|O22512 (O22512) Grr1, partial (11%)
          Length = 550

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 26/114 (22%), Positives = 47/114 (40%), Gaps = 4/114 (3%)
 Frame = +3

Query: 52  MEHLAFGGCTELDDSETLKSSEECETQSSIKQPEETLVDENLSGNQH-EEYSAEIGVAAG 110
           +E L   GC  + D+  +  +E C+    +      + D  ++   H E+ + +I   +G
Sbjct: 72  LEVLNVDGCKNVSDASLMAIAEHCQLLCDLDVSNCAITDAGIAALAHAEQLNLQILSLSG 251

Query: 111 -NLVSDIATNSEDQFLHHPSDENLERTSCNGGVSRCSV--SNTLDHVVSSNNKC 161
             LVSD +          PS   L  T     +  C+   S+T+D +V    +C
Sbjct: 252 CTLVSDRSL---------PSLRKLGHTLLGLNIQHCNAISSSTVDMLVEFLWRC 386


>TC14079 
          Length = 912

 Score = 26.2 bits (56), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (55%)
 Frame = -3

Query: 187 SDPFMSKQEKKVKRKHRRKKLYYETEDLEFQK 218
           SDP+ S +EK++K     +  + E ED+   K
Sbjct: 106 SDPYRSDEEKRIKEGR*TRSGFLEEEDINEDK 11


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,703,672
Number of Sequences: 28460
Number of extensions: 90362
Number of successful extensions: 432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of query: 367
length of database: 4,897,600
effective HSP length: 92
effective length of query: 275
effective length of database: 2,279,280
effective search space: 626802000
effective search space used: 626802000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)