BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149210.5 + phase: 0
(128 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12449 similar to GB|AAO42852.1|28416643|BT004606 At5g59380 {Ar... 86 2e-18
TC15736 similar to UP|AAR24652 (AAR24652) At5g64220, partial (6%) 28 0.63
TC12944 27 0.83
BP063680 27 1.1
TC16300 similar to UP|Q93Y11 (Q93Y11) Berberine bridge enzyme-li... 27 1.1
AV414989 26 1.8
TC11702 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, p... 26 1.8
TC8788 UP|Q84LE3 (Q84LE3) Squalene synthase, complete 26 2.4
TC17511 similar to UP|AAR92260 (AAR92260) At3g46180, partial (14%) 26 2.4
TC16861 26 2.4
TC12301 weakly similar to UP|CAR5_RHINI (P43232) Rhizopuspepsin ... 25 3.1
TC11911 25 3.1
BP030312 25 3.1
TC14374 similar to UP|O65848 (O65848) Annexin, partial (5%) 25 3.1
BP039507 25 4.1
TC9321 similar to UP|O04320 (O04320) Proline-rich protein APG is... 25 4.1
TC14964 weakly similar to UP|SOX_ARATH (Q9SJA7) Potential sarcos... 25 4.1
AV427645 25 4.1
TC9832 similar to UP|AAR92244 (AAR92244) At5g20110, partial (34%) 25 5.4
AV780466 25 5.4
>TC12449 similar to GB|AAO42852.1|28416643|BT004606 At5g59380 {Arabidopsis
thaliana;}, partial (7%)
Length = 873
Score = 85.9 bits (211), Expect = 2e-18
Identities = 47/95 (49%), Positives = 62/95 (64%), Gaps = 1/95 (1%)
Frame = +1
Query: 7 VEMEHLNLNRNVMNLREKELQIVVQSP-SKVEVPDGWLVEQRPRPSNPNHIDRYYIEPHT 65
V+ E LN N + E QIV P ++PD W+VE +PRPS P HID+YY EP T
Sbjct: 67 VQKEQLNQNPS-----GNEFQIVRFMPFPNFKLPDDWVVETKPRPSKPTHIDKYYYEPGT 231
Query: 66 GQKFRSLVSVQRYLNGGETGDYLPTQRIISENNNN 100
G+KFRSL++VQR+L GE Y+ +R+ISEN +N
Sbjct: 232 GKKFRSLLAVQRHL-AGEPKHYVTPERMISENEDN 333
>TC15736 similar to UP|AAR24652 (AAR24652) At5g64220, partial (6%)
Length = 758
Score = 27.7 bits (60), Expect = 0.63
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 108 TSFCCIIRLYSCFCFNLYDG 127
T+FCC++R+ F F +Y G
Sbjct: 675 TAFCCLVRVIQDFKFRIYPG 734
>TC12944
Length = 547
Score = 27.3 bits (59), Expect = 0.83
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 5/69 (7%)
Frame = +1
Query: 59 YYIEPHTGQKFRSLVSVQR--YLNGGET---GDYLPTQRIISENNNNVSSNFTFTSFCCI 113
YYI P T KF+ LVS + + T D+ + ++++ + + CC
Sbjct: 130 YYILPFTLSKFQPLVSSSSSPFFSSTPTRLLADFSVDLPAVGASSSS*APSSAHL*KCCW 309
Query: 114 IRLYSCFCF 122
RL+SCF +
Sbjct: 310 FRLFSCFFY 336
>BP063680
Length = 502
Score = 26.9 bits (58), Expect = 1.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -1
Query: 10 EHLNLNRNVMNLREKELQIVVQSPSKVEVPDGWLVEQRPRPSNPNHIDRYYIEPHTG 66
EH + N R LQI + P GW+++++ P+HI+ + H G
Sbjct: 424 EHPLSSSNCWR*RNVGLQIQKKLPMMGLQEHGWMMDEQNIDQGPSHINTSFFSLHYG 254
>TC16300 similar to UP|Q93Y11 (Q93Y11) Berberine bridge enzyme-like protein,
partial (13%)
Length = 550
Score = 26.9 bits (58), Expect = 1.1
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 58 RYYIEPH---TGQKFRSLVSVQRYLNGGETGDYL---PTQRIISENNNNVSSNFTFTSFC 111
R+ I H T Q R +S+ ++ L P + I +N+ SS ++ FC
Sbjct: 411 RHLIHTHKSQTQQPIRPSISILQH*KDHPYSSKLANHPFHKFIDTRSNDSSSTVPYSPFC 232
Query: 112 CIIRL 116
C++ L
Sbjct: 231 CLLHL 217
>AV414989
Length = 416
Score = 26.2 bits (56), Expect = 1.8
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -2
Query: 88 LPTQRIISENNNNVSSNFTFTSFCCIIRLYSCFCFN 123
+P +++ +N + +N+ T I Y C CF+
Sbjct: 121 VPQNHVVTTSNYFIITNYNSTKRSSIFIFYPCICFS 14
>TC11702 similar to UP|Q8W156 (Q8W156) Deoxycytidine deaminase, partial
(95%)
Length = 744
Score = 26.2 bits (56), Expect = 1.8
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -3
Query: 88 LPTQRIISENNNNVSSNFTFTSFCCIIRLYSCFCFN 123
+P +++ +N + +N+ T I Y C CF+
Sbjct: 277 VPQNHVVTTSNYFIITNYNSTKRSSIFIFYPCICFS 170
>TC8788 UP|Q84LE3 (Q84LE3) Squalene synthase, complete
Length = 1892
Score = 25.8 bits (55), Expect = 2.4
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = -2
Query: 22 REKELQIVVQSPSKVEVPDGWLVEQRPRPSNP 53
R K +++ +S ++ +P+ W +P P++P
Sbjct: 868 RNKPIELERESAARFSLPEAWKSFDKPSPTSP 773
>TC17511 similar to UP|AAR92260 (AAR92260) At3g46180, partial (14%)
Length = 606
Score = 25.8 bits (55), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 35 KVEVPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFR 70
K PD W ++ P +N + I R+YI T +K +
Sbjct: 246 KAH*PDTWWLDINPDSTNCSQIPRFYITILTIEKLK 353
>TC16861
Length = 467
Score = 25.8 bits (55), Expect = 2.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 101 VSSNFTFTSFCCIIRLYSCF 120
VS +F+FTS C + LY+C+
Sbjct: 119 VSFHFSFTSKPCSLTLYACY 178
>TC12301 weakly similar to UP|CAR5_RHINI (P43232) Rhizopuspepsin 5 precursor
(Aspartate protease) , partial (8%)
Length = 501
Score = 25.4 bits (54), Expect = 3.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 35 KVEVPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGETG 85
KVE+ D + + P+PS+P D Y++ + + F ++ L+ G G
Sbjct: 287 KVELSDLFSLTYCPKPSDPCLYDISYVDGSSAKGFFGSDTITVELSNGRKG 439
>TC11911
Length = 531
Score = 25.4 bits (54), Expect = 3.1
Identities = 8/9 (88%), Positives = 9/9 (99%)
Frame = +3
Query: 119 CFCFNLYDG 127
CFCF+LYDG
Sbjct: 342 CFCFSLYDG 368
>BP030312
Length = 418
Score = 25.4 bits (54), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
Frame = +2
Query: 95 SENNNNVSSNFTFTS--FCCIIRLYSCFCFNL 124
S +VSS F+ FC + Y CFCF++
Sbjct: 113 SXATGSVSSTLYFSQDPFCVSVCCYVCFCFSV 208
>TC14374 similar to UP|O65848 (O65848) Annexin, partial (5%)
Length = 611
Score = 25.4 bits (54), Expect = 3.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 28 IVVQSPSKVEVPDGWLVEQRPRPSNPNH 55
IV+ S SKV+ G VEQ R PNH
Sbjct: 18 IVIYSGSKVKKYSGEGVEQEERLEYPNH 101
>BP039507
Length = 518
Score = 25.0 bits (53), Expect = 4.1
Identities = 11/36 (30%), Positives = 17/36 (46%)
Frame = -3
Query: 90 TQRIISENNNNVSSNFTFTSFCCIIRLYSCFCFNLY 125
+Q + N S+NF F C L +C CF+ +
Sbjct: 321 SQCAVGRTQNPNSTNFQL*LFYCTCMLNACACFSSF 214
>TC9321 similar to UP|O04320 (O04320) Proline-rich protein APG isolog,
partial (37%)
Length = 541
Score = 25.0 bits (53), Expect = 4.1
Identities = 7/22 (31%), Positives = 14/22 (62%)
Frame = -1
Query: 91 QRIISENNNNVSSNFTFTSFCC 112
+R+++ N+N+ + F FCC
Sbjct: 133 ERLVNIKNHNLKTRMLFLEFCC 68
>TC14964 weakly similar to UP|SOX_ARATH (Q9SJA7) Potential sarcosine oxidase
, partial (33%)
Length = 612
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 13 NLNRNVMNLREKELQIVVQSPSKVEVPDGWLV 44
N+ ++N R Q+ + P K+++PD W+V
Sbjct: 357 NIPHELLNRR----QLAEKLPGKLDIPDDWVV 440
>AV427645
Length = 403
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -3
Query: 94 ISENNNNVSSNFTFTSFCCIIRLYSCFCF 122
I NNN CC +++ CFCF
Sbjct: 110 IGNQNNN*KKKEEEEYVCCWLKVSFCFCF 24
>TC9832 similar to UP|AAR92244 (AAR92244) At5g20110, partial (34%)
Length = 586
Score = 24.6 bits (52), Expect = 5.4
Identities = 10/39 (25%), Positives = 18/39 (45%)
Frame = -3
Query: 85 GDYLPTQRIISENNNNVSSNFTFTSFCCIIRLYSCFCFN 123
G Y P+ +S+N + NF+ S + + + C N
Sbjct: 224 GPYTPSNSFLSDNARVLDVNFSILSIAFLAQSTAWICIN 108
>AV780466
Length = 387
Score = 24.6 bits (52), Expect = 5.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 36 VEVPDGWLVEQRPR 49
V++PD WLV+ PR
Sbjct: 290 VQIPDSWLVQPLPR 249
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,509,723
Number of Sequences: 28460
Number of extensions: 33630
Number of successful extensions: 322
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of query: 128
length of database: 4,897,600
effective HSP length: 80
effective length of query: 48
effective length of database: 2,620,800
effective search space: 125798400
effective search space used: 125798400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)
Medicago: description of AC149210.5