BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149210.3 + phase: 0
(195 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8253 UP|Q40219 (Q40219) RAB8E, complete 294 6e-81
TC15772 UP|Q40218 (Q40218) RAB8D, complete 292 3e-80
TC14195 UP|Q40215 (Q40215) RAB8A, complete 286 2e-78
NP459466 RAB8C [Lotus japonicus] 285 5e-78
TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein... 282 2e-77
TC8227 UP|Q40203 (Q40203) RAB1C, complete 190 2e-49
TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete 189 3e-49
TC8930 UP|Q40204 (Q40204) RAB1D, complete 185 5e-48
TC12907 UP|Q40201 (Q40201) RAB1A, complete 183 2e-47
AU089325 169 2e-43
TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein ... 156 3e-39
TC14872 UP|Q40208 (Q40208) RAB2A, complete 148 5e-37
TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete 145 5e-36
NP459482 RAB11J [Lotus japonicus] 142 3e-35
TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Ra... 142 4e-35
TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete 141 7e-35
TC16955 UP|Q40206 (Q40206) RAB1X, complete 141 9e-35
TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete 135 4e-33
TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete 135 4e-33
TC18671 UP|Q40198 (Q40198) RAB11H, complete 135 6e-33
>TC8253 UP|Q40219 (Q40219) RAB8E, complete
Length = 1106
Score = 294 bits (753), Expect = 6e-81
Identities = 150/193 (77%), Positives = 166/193 (85%), Gaps = 3/193 (1%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK+I LQ+WDTAGQERFRTITTA
Sbjct: 252 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 431
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGAMGILLVYDVTDESSFNNI NWI +IEQH+SDN VNKILVGNK DMDESKRAVP S
Sbjct: 432 YYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN-VNKILVGNKADMDESKRAVPTS 608
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPD---SKKTPSRIRINKHNNA 182
KGQALA++YGIKFFETSAKTNLNV+E FFSIARDIKQRL D SK P+ I+IN +
Sbjct: 609 KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSSKTEPTGIKINPQDKG 788
Query: 183 TAARGSQKSECCG 195
+A +QKS CCG
Sbjct: 789 SAGEAAQKSACCG 827
>TC15772 UP|Q40218 (Q40218) RAB8D, complete
Length = 1139
Score = 292 bits (747), Expect = 3e-80
Identities = 147/192 (76%), Positives = 167/192 (86%), Gaps = 2/192 (1%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK++ LQ+WDTAGQERFRTITTA
Sbjct: 308 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTA 487
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGAMGILLVYDVTDE+SFNNI NWIR+IEQH+SDN VNKILVGNK DMDESKRAVP S
Sbjct: 488 YYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN-VNKILVGNKADMDESKRAVPTS 664
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDS--KKTPSRIRINKHNNAT 183
KGQALA++YGIKFFETSAKTNLNV+E FFSIARDIKQRL D+ K P+ ++IN+ + A
Sbjct: 665 KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDHKAEPTTLKINQDSAAG 844
Query: 184 AARGSQKSECCG 195
A + KS CCG
Sbjct: 845 AGEAANKSSCCG 880
>TC14195 UP|Q40215 (Q40215) RAB8A, complete
Length = 1171
Score = 286 bits (731), Expect = 2e-78
Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK+I LQ+WDTAGQERFRTITTA
Sbjct: 272 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 451
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGAMGILLVYDVTDE+SFNNI NWIR+IEQH+SDN VNKILVGNK DMDESKRAVP S
Sbjct: 452 YYRGAMGILLVYDVTDEASFNNIKNWIRNIEQHASDN-VNKILVGNKADMDESKRAVPTS 628
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL--PDSKKTPSRIRINKHN-NA 182
KGQALA++YGIKFFETSAKTNLNV+E FFSIARDIKQRL DS+ P I+IN+ + +A
Sbjct: 629 KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIQINQPDASA 808
Query: 183 TAARGSQKSECCG 195
+ + +QKS CCG
Sbjct: 809 SGGQAAQKS-CCG 844
>NP459466 RAB8C [Lotus japonicus]
Length = 639
Score = 285 bits (728), Expect = 5e-78
Identities = 149/192 (77%), Positives = 163/192 (84%), Gaps = 2/192 (1%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK+I LQ+WDTAGQER RTITTA
Sbjct: 70 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERVRTITTA 249
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GILLVYDVTDESSFNNI NWIR+IEQH+SDN VNKILVGNK DMDESKRAVP S
Sbjct: 250 YYRGAKGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKILVGNKADMDESKRAVPTS 426
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL--PDSKKTPSRIRINKHNNAT 183
KGQALA++YGIKFFETSAKTNLNV+E FFSIARDIKQRL DSK P I+IN+ +
Sbjct: 427 KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPQTIKINQPDQPA 606
Query: 184 AARGSQKSECCG 195
AA Q S CCG
Sbjct: 607 AA---QNSTCCG 633
>TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein, complete
Length = 1109
Score = 282 bits (722), Expect = 2e-77
Identities = 146/193 (75%), Positives = 164/193 (84%), Gaps = 3/193 (1%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRFSD FTTS+ITT+GID+K R IELDGK+I L +WDTAGQERFRTITTA
Sbjct: 321 SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLHIWDTAGQERFRTITTA 500
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YY GAMGILLVYDVTDESSFN+I NWIR +E H+SDN VNKILVGNK DMDESKRAVP S
Sbjct: 501 YYLGAMGILLVYDVTDESSFNHIQNWIRHLEPHASDN-VNKILVGNKADMDESKRAVPTS 677
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLP--DSKKTPSRIRINK-HNNA 182
KGQALA++YGIKFFETSAKTNLNVDE FFSIARDIKQR+ DSK P ++IN+ A
Sbjct: 678 KGQALADEYGIKFFETSAKTNLNVDEVFFSIARDIKQRVADNDSKAEPQTLKINQPDQGA 857
Query: 183 TAARGSQKSECCG 195
+A+ +QKS CCG
Sbjct: 858 GSAQAAQKSACCG 896
>TC8227 UP|Q40203 (Q40203) RAB1C, complete
Length = 1083
Score = 190 bits (482), Expect = 2e-49
Identities = 97/192 (50%), Positives = 135/192 (69%), Gaps = 3/192 (1%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRF+D + SYI+T+G+D+K R +E DGK I LQ+WDTAGQERFRTIT++
Sbjct: 176 SGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS 355
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVTD+ SFNN+ W+ I++++S+N VNK+LVGNK D+ +K V +
Sbjct: 356 YYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANK-VVSYE 529
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL---PDSKKTPSRIRINKHNNA 182
+A A++ GI F ETSAK NV++AF ++A +IK R+ P + P ++I
Sbjct: 530 TAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPTVQIR----- 694
Query: 183 TAARGSQKSECC 194
+QKS CC
Sbjct: 695 -GQPVNQKSGCC 727
>TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete
Length = 951
Score = 189 bits (480), Expect = 3e-49
Identities = 98/192 (51%), Positives = 132/192 (68%), Gaps = 3/192 (1%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRF+D + SYI+T+G+D+K R +E D K I LQ+WDTAGQERFRTIT++
Sbjct: 140 SGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERFRTITSS 319
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVTDE SFNN+ W+ I++++SDN VNK+LVGNK D+ + RAV +
Sbjct: 320 YYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDN-VNKLLVGNKSDL-TANRAVSYE 493
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRL---PDSKKTPSRIRINKHNNA 182
+A A++ GI F ETSAK NV++AF ++A IK R+ P + P + N
Sbjct: 494 TAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRMASQPANNARPPTV------NI 655
Query: 183 TAARGSQKSECC 194
+ Q S CC
Sbjct: 656 SGKPVGQSSGCC 691
>TC8930 UP|Q40204 (Q40204) RAB1D, complete
Length = 943
Score = 185 bits (469), Expect = 5e-48
Identities = 97/192 (50%), Positives = 127/192 (65%), Gaps = 3/192 (1%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRF D + SYI+T+G+D+K R +E D K I LQ+WDTAGQERFRTIT++
Sbjct: 138 SGVGKSCLLLRFGDDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERFRTITSS 317
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVTDE SFNN+ W+ I++++SDN VNK+LVGNK D+ + RAV +
Sbjct: 318 YYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDN-VNKLLVGNKCDL-TANRAVSYD 491
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHNNATAA 185
+ A+ GI F ETSAK NV++AF +++ IK R+ N
Sbjct: 492 TAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSAN-----NGRPPTVQI 656
Query: 186 RG---SQKSECC 194
RG QKS CC
Sbjct: 657 RGQPVGQKSGCC 692
>TC12907 UP|Q40201 (Q40201) RAB1A, complete
Length = 869
Score = 183 bits (464), Expect = 2e-47
Identities = 95/193 (49%), Positives = 134/193 (69%), Gaps = 3/193 (1%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+ VGKS LLLRF+D + SYI+T+G+D+K R +EL GK I LQ+WDTAGQERFRTIT++
Sbjct: 161 SSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWDTAGQERFRTITSS 340
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVT+ SFNN+ W+ I+++++D++ K+LVGNK D+ E+K V
Sbjct: 341 YYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVC-KLLVGNKSDLVENK-VVDTQ 514
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHNNATAA 185
+A A++ GI F ETSAK ++NV++AF ++A +IK KK S+ +K
Sbjct: 515 TAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIK------KKMGSQPTGSKSAETVQM 676
Query: 186 RGS---QKSECCG 195
+G QKS CCG
Sbjct: 677 KGQPIPQKSNCCG 715
>AU089325
Length = 757
Score = 169 bits (429), Expect = 2e-43
Identities = 82/139 (58%), Positives = 108/139 (76%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS LLLRF+D + SYI+T+G+D+K R +E D K I LQ+WDTAGQERFRTIT++
Sbjct: 96 SGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTAGQERFRTITSS 275
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA GI++VYDVTDE SFNN+ W+ I++++SDN VNK+LVGNK D+ + RAV +
Sbjct: 276 YYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDN-VNKLLVGNKCDL-TANRAVSYD 449
Query: 126 KGQALANKYGIKFFETSAK 144
+ A++ GI F ETSAK
Sbjct: 450 TAKEFADQIGIPFMETSAK 506
>TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 860
Score = 156 bits (394), Expect = 3e-39
Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS+LL RF+ + F +T+G+++ R +E++G+ + Q+WDTAGQER+R IT+A
Sbjct: 143 SGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLEVEGRMVKAQIWDTAGQERYRAITSA 322
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYDVT +SF N+T W++ + H+ NIV +L+GNK D+ + R V
Sbjct: 323 YYRGALGALLVYDVTKPTSFENVTRWLKELRDHADANIV-IMLIGNKTDL-KHLRGVATE 496
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI-----KQRLPDSKKTPSRIRINKHN 180
Q+ A K G+ F ETSA NVD+AF +I I K+ L S PS I + N
Sbjct: 497 DAQSYAEKEGLSFIETSALEATNVDKAFQTILAQIYRIISKKSLSSSSTDPSAPNIKQGN 676
Query: 181 NATAARGSQ---KSECC 194
T G Q CC
Sbjct: 677 TITIQGGLQPNTSKSCC 727
>TC14872 UP|Q40208 (Q40208) RAB2A, complete
Length = 1125
Score = 148 bits (374), Expect = 5e-37
Identities = 74/160 (46%), Positives = 107/160 (66%)
Frame = +3
Query: 7 GVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTAY 66
GVGKS LLL+F+D F + T+G+++ R I +D K I LQ+WDTAGQE FR+IT +Y
Sbjct: 252 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 431
Query: 67 YRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFSK 126
YRGA G LLVYD+T +FN++ +W+ QH++ N + +L+GNK D+ +RAV +
Sbjct: 432 YRGAAGALLVYDITRRETFNHLASWLEDARQHANAN-MTIMLIGNKCDL-AHRRAVSTEE 605
Query: 127 GQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPD 166
G+ A ++G+ F E SAKT NV+EAF A I +++ D
Sbjct: 606 GEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 725
>TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete
Length = 1193
Score = 145 bits (366), Expect = 5e-36
Identities = 78/196 (39%), Positives = 118/196 (59%), Gaps = 7/196 (3%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS++L RF+ + F +T+G+++ R ++++GK + Q+WDTAGQER+R IT+A
Sbjct: 297 SGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 476
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYD+T +F+N+ W+R + H+ NIV ++ GNK D++ RAV
Sbjct: 477 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNH-LRAVSED 650
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI-----KQRLPDSKKTPSRIRINKHN 180
G ALA K G+ F ETSA N+++AF +I +I K+ L + T +
Sbjct: 651 DGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGT 830
Query: 181 --NATAARGSQKSECC 194
N G+ K CC
Sbjct: 831 TINVADTSGNTKKGCC 878
>NP459482 RAB11J [Lotus japonicus]
Length = 672
Score = 142 bits (359), Expect = 3e-35
Identities = 74/174 (42%), Positives = 116/174 (66%)
Frame = +1
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+ VGKS+LL RF+ F + +T+G++++ + I+++GK+I Q+WDTAGQERFR +T+A
Sbjct: 67 SAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIDINGKEIKAQIWDTAGQERFRAVTSA 246
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G L+VYD++ +F++I W+ + HS N+V ILVGNK D+ ++ R V +
Sbjct: 247 YYRGAVGALVVYDISRRQTFDSIGRWLNELHTHSDMNVVT-ILVGNKSDLKDA-REVTTA 420
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKH 179
+G+ALA G+ F ETSA + NV AF ++ ++I L S+K + KH
Sbjct: 421 EGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNIL--SRKVMMSQELTKH 576
>TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Rab11B,
partial (89%)
Length = 973
Score = 142 bits (358), Expect = 4e-35
Identities = 70/155 (45%), Positives = 102/155 (65%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS+LL RF+ + F +T+G+++ R++ + K + Q+WDTAGQER+R IT+A
Sbjct: 225 SGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVRIHDKTVKAQIWDTAGQERYRAITSA 404
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G L+VYDVT + +F N+ W++ + H+ NIV +LVGNK D+ RAVP
Sbjct: 405 YYRGAVGALIVYDVTRQVTFENVQRWLKELRDHTDANIV-IMLVGNKADL-RHLRAVPTE 578
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI 160
+ A A + F ETSA +LNVD AF + +I
Sbjct: 579 EATAFAERENTYFMETSALESLNVDNAFIXVLSEI 683
>TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete
Length = 1019
Score = 141 bits (356), Expect = 7e-35
Identities = 78/190 (41%), Positives = 112/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKSSLLL F+ F T+G+D+K + + + GKK+ L +WDTAGQERFRT+T++
Sbjct: 137 SGVGKSSLLLSFTSDEFQ-DMSPTIGVDFKVKYVAIGGKKLKLAIWDTAGQERFRTLTSS 313
Query: 66 YYRGAMGILLVYDVTDESSFNNITN-WIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPF 124
YYRGA GI++VYDVT +F N++ W + I+ +S++ K+LVGNKVD ES R V
Sbjct: 314 YYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVD-KESDRVVSK 490
Query: 125 SKGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHNNATA 184
+G A +YG F E SAKT +NV + F + I + ++ N +
Sbjct: 491 KEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDKQP 670
Query: 185 ARGSQKSECC 194
+ S CC
Sbjct: 671 QADASTSSCC 700
>TC16955 UP|Q40206 (Q40206) RAB1X, complete
Length = 1104
Score = 141 bits (355), Expect = 9e-35
Identities = 79/190 (41%), Positives = 116/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKSSLL+ F S T+G+D+K + + + GK++ L +WDTAGQERFRT+T++
Sbjct: 152 SGVGKSSLLVSFISSS-VEDQSPTIGVDFKIKMLTVGGKRLKLTLWDTAGQERFRTLTSS 328
Query: 66 YYRGAMGILLVYDVTDESSFNNITN-WIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPF 124
YYRGA GI+LVYDVT +F N++ W + +E +S++ K+LVGNKVD D + RAV
Sbjct: 329 YYRGAQGIILVYDVTKRETFTNLSEVWSKELELYSNNQDCVKMLVGNKVDRD-AARAVSR 505
Query: 125 SKGQALANKYGIKFFETSAKTNLNVDEAFFSIARDIKQRLPDSKKTPSRIRINKHNNATA 184
+G ALA + G E SAKT NV++ F +A I + ++ + ++ N
Sbjct: 506 EEGLALAKELGCLLIECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQE 685
Query: 185 ARGSQKSECC 194
+ SQ CC
Sbjct: 686 PQASQHGGCC 715
>TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete
Length = 984
Score = 135 bits (341), Expect = 4e-33
Identities = 65/155 (41%), Positives = 102/155 (64%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+ VGKS +L RF+ + F+ +T+G++++ R + +D K + Q+WDTAGQER+R +T+A
Sbjct: 137 SAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSA 316
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G +LVYD+T +F++I W+ + H+ NIV IL+GNK D+ ++R VP
Sbjct: 317 YYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIV-IILIGNKCDL-VNQRDVPTE 490
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI 160
+ A K G+ F ETSA NV+ AF ++ +I
Sbjct: 491 DAKEFAEKEGLFFLETSALEATNVESAFTTVLTEI 595
>TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete
Length = 1302
Score = 135 bits (341), Expect = 4e-33
Identities = 67/155 (43%), Positives = 99/155 (63%)
Frame = +2
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS+LL RF+ + F +T+G+++ + + +D K + Q+WDTAGQER+R IT+A
Sbjct: 311 SGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSA 490
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYDVT ++F N W++ + H+ NIV +L+GNK D+ AVP
Sbjct: 491 YYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV-VMLIGNKSDL-RHLVAVPTE 664
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI 160
G++ A + + F ETSA NV+ AF + I
Sbjct: 665 DGKSFAERESLYFMETSALEATNVENAFTEVLTQI 769
>TC18671 UP|Q40198 (Q40198) RAB11H, complete
Length = 1181
Score = 135 bits (339), Expect = 6e-33
Identities = 68/155 (43%), Positives = 98/155 (62%)
Frame = +3
Query: 6 AGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRAIELDGKKIMLQVWDTAGQERFRTITTA 65
+GVGKS+LL RF+ + F+ +T+G+++ R+I +D K + Q+WDTAGQER+R IT+A
Sbjct: 267 SGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYRAITSA 446
Query: 66 YYRGAMGILLVYDVTDESSFNNITNWIRSIEQHSSDNIVNKILVGNKVDMDESKRAVPFS 125
YYRGA+G LLVYDVT +F N+ W++ + H+ NIV +LVGNK D+ +
Sbjct: 447 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDTNIV-VMLVGNKADLRHLRAVSTED 623
Query: 126 KGQALANKYGIKFFETSAKTNLNVDEAFFSIARDI 160
L N+ F ETSA +LNV+ AF + I
Sbjct: 624 SSGFLLNERTHFFMETSALESLNVENAFTEVLTQI 728
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,771,366
Number of Sequences: 28460
Number of extensions: 27080
Number of successful extensions: 216
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of query: 195
length of database: 4,897,600
effective HSP length: 85
effective length of query: 110
effective length of database: 2,478,500
effective search space: 272635000
effective search space used: 272635000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC149210.3