BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149207.4 - phase: 0
(168 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427033 54 1e-08
AV768207 54 1e-08
AV423520 49 4e-07
BG662160 48 1e-06
BP035281 47 2e-06
BP052653 44 2e-05
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo... 43 3e-05
AW720409 43 3e-05
TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (... 43 3e-05
AV414925 42 4e-05
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 41 9e-05
BI419994 41 9e-05
BP076687 39 6e-04
AV413010 38 8e-04
BP051299 38 8e-04
AI967639 38 0.001
BP037714 37 0.001
AI967453 37 0.002
AV416122 37 0.002
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 36 0.003
>AV427033
Length = 420
Score = 54.3 bits (129), Expect = 1e-08
Identities = 25/50 (50%), Positives = 33/50 (66%)
Frame = +1
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLADIT 63
LP +L++EIL R+ N+ LQ R VCK W SL+ D +F + HLH S D T
Sbjct: 124 LPFDLVVEILCRLPVNSLLQFRCVCKSWNSLISDPKFAKNHLHCSPPDFT 273
>AV768207
Length = 374
Score = 53.9 bits (128), Expect = 1e-08
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +1
Query: 10 PTTILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLADIT 63
P LP EL +EIL R+ + LQLR VCK WKSL+ D +F + HL S D T
Sbjct: 61 PFPTLPFELGVEILCRLPVKSLLQLRCVCKSWKSLISDPKFAKNHLRCSSTDFT 222
>AV423520
Length = 468
Score = 48.9 bits (115), Expect = 4e-07
Identities = 26/55 (47%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
Frame = +3
Query: 10 PTTILPVELMIEILARVDSNNPLQLRSVCKWWKSLVV-DDQFVQKHLHKSLADIT 63
P LP EL++EIL R+ + LQ R VCK W SL+ D +F +KHL S D T
Sbjct: 153 PLPTLPFELVVEILCRLPVKSLLQFRCVCKSWNSLISGDPKFARKHLRCSPKDFT 317
>BG662160
Length = 445
Score = 47.8 bits (112), Expect = 1e-06
Identities = 27/67 (40%), Positives = 39/67 (57%), Gaps = 5/67 (7%)
Frame = +2
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLA-----DITDLLST 68
LP EL +EIL+ + + ++ R V K WKS++ D QF++ HLH+S + D L S
Sbjct: 23 LPEELRLEILSWLPVKSLVRFRCVSKSWKSIISDSQFIKLHLHRSSSTTRNTDFAYLQSL 202
Query: 69 ATEHRKS 75
T RKS
Sbjct: 203ITSPRKS 223
>BP035281
Length = 498
Score = 46.6 bits (109), Expect = 2e-06
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +2
Query: 8 ESPTTILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQ-FVQKHLHKSLADITDLL 66
E T + P EL+IEIL+ + + ++ + VCK WKSL+ ++ F + L ++ I ++
Sbjct: 104 EIVTDVFPSELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAKLQLERTSLKINHVI 283
Query: 67 STATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEE 106
T+++ SF+ +P L++ D D D +D+ E
Sbjct: 284 LTSSD--SSFIPCSLPRLLEDPSSIMDQDQDRCLRLDKFE 397
>BP052653
Length = 552
Score = 43.5 bits (101), Expect = 2e-05
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +1
Query: 11 TTILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLA 60
++ILP +L+++IL R+ + L+ +SVCK W SL+ D QF + H + A
Sbjct: 178 SSILPHDLIVQILLRLPVRSLLRFKSVCKSWLSLISDPQFGKSHFDLAAA 327
>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5,
TAC clone:K14B20, partial (7%)
Length = 782
Score = 42.7 bits (99), Expect = 3e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHL 55
LP EL+IEIL+ + + LQ R V K WKS + D QFV+ HL
Sbjct: 48 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHL 173
>AW720409
Length = 575
Score = 42.7 bits (99), Expect = 3e-05
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Frame = +3
Query: 13 ILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQ-FVQKHLHKSLADITDLLSTATE 71
+LP EL IEIL+ + ++ V K WKSL+ D+ F + HL +S + ++ T +
Sbjct: 90 VLPFELWIEILSWLPVKTLMRFSCVSKSWKSLIYQDRDFKKLHLDRSPKNNNQVILTLQK 269
Query: 72 ---HRKSFVSHQIPNQLQEEEEEDDD--DDDDDEEVDEEE 106
++F + LQ++E DD EE DE+E
Sbjct: 270 PLFSGRTFFPFPVRRLLQDQEPSSSSIIDDIPFEEEDEDE 389
>TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (SLF)-S4
protein, partial (10%)
Length = 551
Score = 42.7 bits (99), Expect = 3e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHL 55
LP EL+IEIL+ + + LQ R V K WKS + D QFV+ HL
Sbjct: 21 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHL 146
>AV414925
Length = 414
Score = 42.4 bits (98), Expect = 4e-05
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Frame = +1
Query: 8 ESPTTI---LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLAD 61
++PT + +PVE++ +IL+R+ + L+ RS+ K W+SL+ F++ HL+ SL +
Sbjct: 70 QNPTLMAEEIPVEVIADILSRLPVTSLLRFRSISKSWRSLIDSKHFMKLHLNNSLTN 240
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 41.2 bits (95), Expect = 9e-05
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 5 ATAESPTTILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLA 60
A E P IL EL+ EIL+ + + ++ R VCK WK + + QF++ HL +S A
Sbjct: 51 ADTEPPPPILIDELIWEILSLLPVKSLVRFRCVCKSWKLTISNPQFMKLHLRRSSA 218
>BI419994
Length = 549
Score = 41.2 bits (95), Expect = 9e-05
Identities = 17/43 (39%), Positives = 29/43 (66%)
Frame = +2
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLH 56
LP EL+++IL R+ + L+ ++VCK W+ L+ D QF + H +
Sbjct: 47 LPDELILQILLRLPVRSLLRFKTVCKSWRYLISDPQFTKSHFN 175
>BP076687
Length = 389
Score = 38.5 bits (88), Expect = 6e-04
Identities = 18/41 (43%), Positives = 27/41 (64%)
Frame = -3
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKH 54
LP EL+ +IL R+ + L+ +SVCK W SL+ D +F + H
Sbjct: 381 LPEELIPQILLRLPVRSLLRFKSVCKSWLSLISDPKFGKSH 259
>AV413010
Length = 416
Score = 38.1 bits (87), Expect = 8e-04
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +3
Query: 6 TAESPT--TILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLADIT 63
T E+P+ +ILP EL+I+IL ++ + L+ +SV K W S + + QF + H + + +
Sbjct: 66 TEENPSLSSILPDELIIQILLQLPVTSLLRFKSVSKSWFSQISNPQFAKSHFNLAASPTH 245
Query: 64 DLLSTATE 71
L +T+
Sbjct: 246 YLFLKSTD 269
>BP051299
Length = 539
Score = 38.1 bits (87), Expect = 8e-04
Identities = 25/80 (31%), Positives = 36/80 (44%)
Frame = +2
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLADITDLLSTATEHR 73
LP E+ EIL R+ ++ SVCK W+SL+ F+ H + S + + LL E
Sbjct: 5 LPQEIWAEILHRLPPKTLVKCTSVCKSWRSLITSTSFISLHRNHSPSSL--LLQLCDE-- 172
Query: 74 KSFVSHQIPNQLQEEEEEDD 93
IPN + DD
Sbjct: 173-----RAIPNFIHYSLRRDD 217
>AI967639
Length = 335
Score = 37.7 bits (86), Expect = 0.001
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +1
Query: 44 LVVDDQFVQKHLHKSLADITDLLSTATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVD 103
+V D+++++K K DI+ E + + L++EEE+DDDDDDDD +
Sbjct: 34 VVYDEEYLKKR--KQRRDISSSSEGDEEDEEEDQGDEY--NLEDEEEDDDDDDDDDLSIS 201
Query: 104 EEEAAKRAR 112
E+ + + R
Sbjct: 202 EDSDSDKPR 228
>BP037714
Length = 463
Score = 37.4 bits (85), Expect = 0.001
Identities = 25/85 (29%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Frame = +1
Query: 64 DLLSTATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELDN-L 122
D+L+ + KSF + + EEE+ + +D+ EE EEE K + E++N
Sbjct: 163 DMLAGTSNRPKSFRQKEAEH---EEEDPEQVSEDESEEESEEETKKNKGTQGIIEIENPN 333
Query: 123 LVGVRSIK-RELEIIKVDTLAMKDR 146
LV +++K R+++I K L+ ++R
Sbjct: 334 LVKPKNVKARDVDIEKTTELSRRER 408
>AI967453
Length = 456
Score = 37.0 bits (84), Expect = 0.002
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 18 LMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKS 58
L+ EIL R+ + ++ ++VCK+W+SL+ D F H ++
Sbjct: 16 LITEILLRLPVKSLVRFKAVCKFWRSLISDPHFATSHFERA 138
>AV416122
Length = 414
Score = 37.0 bits (84), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 83 NQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELDNLLVGV 126
N +Q E EE++DD++D EE DEEE + N AE+D G+
Sbjct: 282 NDVQFEGEEEEDDEEDKEEEDEEEDDEDDDSNGEAEVDRKGKGI 413
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 36.2 bits (82), Expect = 0.003
Identities = 13/20 (65%), Positives = 19/20 (95%)
Frame = +3
Query: 87 EEEEEDDDDDDDDEEVDEEE 106
+E+E+DDDDDDDD++ +EEE
Sbjct: 285 DEDEDDDDDDDDDDDGEEEE 344
Score = 35.8 bits (81), Expect = 0.004
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 82 PNQLQEEEEEDDDDDDDDEEVDEEE 106
P Q EEEEDDD+++DDE+ D+++
Sbjct: 234 PVQTDNEEEEDDDEEEDDEDEDDDD 308
Score = 35.8 bits (81), Expect = 0.004
Identities = 13/21 (61%), Positives = 19/21 (89%)
Frame = +3
Query: 86 QEEEEEDDDDDDDDEEVDEEE 106
+++E+EDDDDDDDD++ EEE
Sbjct: 279 EDDEDEDDDDDDDDDDDGEEE 341
Score = 34.7 bits (78), Expect = 0.009
Identities = 20/47 (42%), Positives = 25/47 (52%), Gaps = 6/47 (12%)
Frame = +3
Query: 88 EEEEDDDDDDDDEEVDEE------EAAKRARMNRLAELDNLLVGVRS 128
EEEEDDDDDD++EE EE + AK A + VG+ S
Sbjct: 333 EEEEDDDDDDEEEEGSEEVEVEGKDGAKGAAAQTTKAAAAMCVGIGS 473
Score = 34.3 bits (77), Expect = 0.011
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +3
Query: 86 QEEEEEDDDDDDDDEEVDEEE 106
+E++E++DDDDDDD++ D EE
Sbjct: 276 EEDDEDEDDDDDDDDDDDGEE 338
Score = 34.3 bits (77), Expect = 0.011
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +3
Query: 86 QEEEEEDDDDDDDDEEVDEEE 106
+EE++ED+DDDDDD++ D+ E
Sbjct: 273 EEEDDEDEDDDDDDDDDDDGE 335
Score = 33.9 bits (76), Expect = 0.015
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 87 EEEEEDDDDDDDDEEVDEEE 106
E+E++DDDDDDDD+ +EE+
Sbjct: 288 EDEDDDDDDDDDDDGEEEED 347
Score = 33.5 bits (75), Expect = 0.019
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +3
Query: 86 QEEEEEDDDDDDDDEEVDEEE 106
++E+++DDDDDDDD E +E++
Sbjct: 288 EDEDDDDDDDDDDDGEEEEDD 350
Score = 32.3 bits (72), Expect = 0.043
Identities = 10/20 (50%), Positives = 19/20 (95%)
Frame = +3
Query: 87 EEEEEDDDDDDDDEEVDEEE 106
+EEE+D+D+DDDD++ D+++
Sbjct: 270 DEEEDDEDEDDDDDDDDDDD 329
Score = 32.3 bits (72), Expect = 0.043
Identities = 10/20 (50%), Positives = 19/20 (95%)
Frame = +3
Query: 87 EEEEEDDDDDDDDEEVDEEE 106
++EEEDD+D+DDD++ D+++
Sbjct: 267 DDEEEDDEDEDDDDDDDDDD 326
Score = 32.0 bits (71), Expect = 0.056
Identities = 9/27 (33%), Positives = 23/27 (84%)
Frame = +3
Query: 80 QIPNQLQEEEEEDDDDDDDDEEVDEEE 106
Q N+ +E+++E++DD+D+D++ D+++
Sbjct: 240 QTDNEEEEDDDEEEDDEDEDDDDDDDD 320
Score = 31.6 bits (70), Expect = 0.073
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = +3
Query: 87 EEEEEDDDDDDDDEEVDEEE 106
E++++DDDDDDD EE ++++
Sbjct: 294 EDDDDDDDDDDDGEEEEDDD 353
Score = 31.2 bits (69), Expect = 0.096
Identities = 9/21 (42%), Positives = 19/21 (89%)
Frame = +3
Query: 86 QEEEEEDDDDDDDDEEVDEEE 106
++++++DDDDDD +EE D+++
Sbjct: 294 EDDDDDDDDDDDGEEEEDDDD 356
Score = 30.8 bits (68), Expect = 0.13
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +3
Query: 82 PNQLQEEEEEDDDDDDDDEEVDEEE 106
P +Q + EE++DDD+++++ DE++
Sbjct: 228 PKPVQTDNEEEEDDDEEEDDEDEDD 302
Score = 30.4 bits (67), Expect = 0.16
Identities = 8/21 (38%), Positives = 20/21 (95%)
Frame = +3
Query: 86 QEEEEEDDDDDDDDEEVDEEE 106
++++EE+DD+D+DD++ D+++
Sbjct: 261 EDDDEEEDDEDEDDDDDDDDD 323
Score = 28.9 bits (63), Expect = 0.48
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Frame = +3
Query: 87 EEEEEDDDDD-----DDDEEVDEEEAAKRARM 113
+++++DDDDD DDD++ +EEE ++ +
Sbjct: 300 DDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEV 395
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.129 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,405,752
Number of Sequences: 28460
Number of extensions: 30894
Number of successful extensions: 1763
Number of sequences better than 10.0: 220
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of query: 168
length of database: 4,897,600
effective HSP length: 84
effective length of query: 84
effective length of database: 2,506,960
effective search space: 210584640
effective search space used: 210584640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC149207.4