BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149206.10 - phase: 0
(427 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI418523 60 7e-10
AV428268 54 4e-08
TC11605 53 1e-07
TC18883 52 2e-07
TC13560 47 5e-06
BP033684 47 5e-06
BP056414 45 3e-05
AU089037 42 3e-04
BP041113 42 3e-04
TC9793 40 6e-04
BP056597 39 0.002
AV780250 38 0.003
AV411435 38 0.003
BP043532 38 0.004
TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3,... 37 0.005
AV412895 37 0.008
TC20198 similar to UP|Q9ZPU0 (Q9ZPU0) At2g13980 protein, partial... 36 0.014
TC11323 34 0.040
BP080173 33 0.090
BI417841 33 0.12
>BI418523
Length = 496
Score = 60.1 bits (144), Expect = 7e-10
Identities = 33/107 (30%), Positives = 52/107 (47%)
Frame = +1
Query: 252 TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYAT 311
T ++ P R W PP G +K N DG+ G+P +G +FR + G F+ N G
Sbjct: 154 TPKLKPPRCWSWSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRKILGYFSLNSGNGW 333
Query: 312 ALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKM 358
A EA+ + + A+ ++ L NI IE+DS + PW++
Sbjct: 334 AYEAKVRSILNALVFIQKFLLKNILIESDSTVAVEWVMSKANRPWRL 474
>AV428268
Length = 429
Score = 54.3 bits (129), Expect = 4e-08
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Frame = +3
Query: 72 SNKLAFSFLPGHGPTVHWA---KMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIV 128
S K A+ FL G W K+LW+ P ++W+ L N++ T NL +RG ++
Sbjct: 9 SVKSAYDFLHGCA-NAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRG-VVI 182
Query: 129 SICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSILNIS--RMVQHVMNSA 186
S C C E++ H+ CP+ ++W K ++ FS N S +QH+ +
Sbjct: 183 SNVCPLCSLDEESTDHLLFSCPIV*RIWS---KISE*FGVFSVFPNDSHGHFLQHLGSCG 353
Query: 187 IVHIM---WSIWL 196
++ W +W+
Sbjct: 354 SLNFRKRGWFVWI 392
>TC11605
Length = 546
Score = 52.8 bits (125), Expect = 1e-07
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +3
Query: 259 REIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYS 318
R +W PP +K N DGS GSP G I R +++ G F++ +G A +AE
Sbjct: 336 RNCVWCPPEANILKFNVDGSARGSPGISGAGGILRNAESAVLGRFSKPLGVLCAYQAEVK 515
Query: 319 ACMFAIEKAK 328
A + A++ +K
Sbjct: 516 AILLALKFSK 545
>TC18883
Length = 821
Score = 52.0 bits (123), Expect = 2e-07
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +1
Query: 285 CGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNV 344
CG IG IFR S G F++++G A EAE A A+ L N+ IE+DS
Sbjct: 7 CG-IGGIFRNSDNEILGFFSKHVGEGFAFEAEVWAIFEALTICVNRQLRNLTIESDSSLA 183
Query: 345 IRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCT-HVNREGNLVADALAKNG 394
+ + + PWK+ + + L+ + L H+ RE N D LAK G
Sbjct: 184 VGWVNNRSXRPWKLLNKLNQIDLWVAEVNCLSVKHIFREANGEVDKLAKRG 336
>TC13560
Length = 571
Score = 47.4 bits (111), Expect = 5e-06
Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Frame = +2
Query: 263 WVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIG---YATALEAEYSA 319
W+ P G +KIN DG+V GV+ A + G F N G A E A
Sbjct: 146 WIKPDAGWVKINVDGAVSNCLQASCRGVLRNADGSWLKG-FRWNFGTFSSANVFLTELMA 322
Query: 320 CMFAIEKAKELHLTNIWIETDSVNVIRAFH--------FNTGVPWKMHI-RWHNCLLFCR 370
A+E A L L + +E+DS+ V+ H ++ +H+ R H L+F
Sbjct: 323 VKTAVEAAMSLDLARVIVESDSLEVVDFLHSTDLGSHRYSQIALDILHLQREHGALVFQY 502
Query: 371 SIRSLCTHVNREGNLVADALAKNGQGLALYSSH 403
++R GN + D +AK G L Y H
Sbjct: 503 ALR---------GNSIVDYIAKFGLSLP-YGEH 571
>BP033684
Length = 557
Score = 47.4 bits (111), Expect = 5e-06
Identities = 33/133 (24%), Positives = 56/133 (41%)
Frame = -1
Query: 184 NSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLA 243
N + ++WS+WLE F G +++ L + + + V +
Sbjct: 515 NLILYALVWSLWLERKQSVFKGKLASSQEVWDLHLMTIF---WWIKAVWKECPYNFDQFH 345
Query: 244 RLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAF 303
R F + + R W PP G +K N DG+ G+P +G + ++M G F
Sbjct: 344 RDFCMLSFKKLIPKQRLKGWTPPSRGILKFNVDGASQGNPGPSGVGGVLCDYRSMVLGFF 165
Query: 304 AQNIGYATALEAE 316
+ N+G+ A EAE
Sbjct: 164 SINMGHGWAYEAE 126
>BP056414
Length = 606
Score = 44.7 bits (104), Expect = 3e-05
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
Frame = -3
Query: 263 WVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIG---YATALEAEYSA 319
W P G K+N DG++ G GV+ A+ + G FA+++G + A E A
Sbjct: 562 WTRPPEGWFKVNVDGALSGDLQASCGGVVRDAAGSWSKG-FARSLGVLRWHXAFFVELMA 386
Query: 320 CMFAIEKAKELHLTNIWIETDSVNVIRAF-HFNTGVPWKM-HIRWHNCLLFCRSIRSLCT 377
A++ + + IE+DS V+ +FN P + I W + T
Sbjct: 385 VQTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQYGEIAWDIQQKISVHGSIVIT 206
Query: 378 HVNREGNLVADALAKNGQGL 397
RE N +AD LAK G L
Sbjct: 205 STPREANFLADYLAKVGLSL 146
>AU089037
Length = 245
Score = 41.6 bits (96), Expect = 3e-04
Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 2/61 (3%)
Frame = -1
Query: 93 LWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVS--ICCCFCRKQAETSSHIFLQCP 150
LW P WR + +++ T NLR+R S C C + E+SSH+F CP
Sbjct: 191 LWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESSSHLFFSCP 12
Query: 151 V 151
+
Sbjct: 11 L 9
>BP041113
Length = 503
Score = 41.6 bits (96), Expect = 3e-04
Identities = 30/91 (32%), Positives = 41/91 (44%), Gaps = 4/91 (4%)
Frame = +1
Query: 59 DKLIWTDSVDGDLSNKLAFSFL--PGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPT 116
DK +W G + A+SFL P T +W P AF WR L +LPT
Sbjct: 229 DKWLWLPG--GTYTVNSAYSFLQAPTLADTDPIFATIWRTVAPSVKAF-AWRCLLGRLPT 399
Query: 117 DDNLRKRGCYI--VSICCCFCRKQAETSSHI 145
DNL KR + C FC+ + E+ +H+
Sbjct: 400 YDNLIKRQVVVDPAMTVCKFCQGEVESVTHL 492
>TC9793
Length = 568
Score = 40.4 bits (93), Expect = 6e-04
Identities = 28/105 (26%), Positives = 43/105 (40%)
Frame = +2
Query: 251 KTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYA 310
K + + R ++W PP G +K+N D GS S G V + M A
Sbjct: 26 KESSIEAPRRMVWEPPPEGIIKVNIDAGWSGSCSTGFSLVARSHNAVMLVAATHLEETQI 205
Query: 311 TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVP 355
AE A + + KE+ + I +E+ S+ V+ H T P
Sbjct: 206 EPTLAEALALRWCLSMIKEMEMERIIVESYSLVVLNTLHQKTKRP 340
>BP056597
Length = 414
Score = 38.5 bits (88), Expect = 0.002
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 59 DKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWA--KMLWNAYTPPTGAFITWRFLHNKLPT 116
D +W DG S K A+ L G T+ + LW A P + WR +++ T
Sbjct: 192 DTWVWILEGDGQYSVKSAYDLLSGLDTTIGISVFSKLWKACAPSNAVALGWRVFLDRIQT 371
Query: 117 DDNLRKR 123
DNL +R
Sbjct: 372 KDNLSRR 392
>AV780250
Length = 494
Score = 38.1 bits (87), Expect = 0.003
Identities = 26/106 (24%), Positives = 44/106 (40%), Gaps = 8/106 (7%)
Frame = +3
Query: 59 DKLIWTDSVDGDLSNKLAFSF--------LPGHGPTVHWAKMLWNAYTPPTGAFITWRFL 110
D L W + +G+ ++K ++ LP + + ++W A T P + R
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWKAPTLPRCRELIGRAF 353
Query: 111 HNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLW 156
LPT LR RG + +C C E+ + + L PV + W
Sbjct: 354 LKILPTRSALRARGMDVDELCPS-CETHRESPAQVLLFVPVVSKWW 488
>AV411435
Length = 426
Score = 38.1 bits (87), Expect = 0.003
Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 13/123 (10%)
Frame = +3
Query: 47 IHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPG-------------HGPTVHWAKML 93
I Q + + D+L W G+ S K + + H + W +
Sbjct: 3 IMQTPFSITGSEDRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLW-HTI 179
Query: 94 WNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTL 153
W A P WR +N +P NL++R C C K E +H L C T
Sbjct: 180 WGAQVPKKVRSFLWRAANNAIPVKRNLKRRNMGRDDF-CPICNKGPEDINHALLACEWTR 356
Query: 154 QLW 156
+W
Sbjct: 357 AVW 365
>BP043532
Length = 465
Score = 37.7 bits (86), Expect = 0.004
Identities = 38/122 (31%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Frame = -2
Query: 307 IGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCL 366
+G + L AE + + A + I IE DS I N G P H C
Sbjct: 464 VGVCSILHAELWGLVHGLRFALGRGFSKILIEADSAGTIE--FLNKGCPVV-----HPCF 306
Query: 367 LFCRSIRSLC--------THVNREGNLVADALAKNG------QGLALYSSHPLAFISSFY 412
R L HV RE N VAD+ AKNG L YSS + F+ S Y
Sbjct: 305 PLVREFHHLVGQNCYIHWKHVYREVNFVADSFAKNGLRIL*CVTLL*YSSVLV*FVQSLY 126
Query: 413 VR 414
+R
Sbjct: 125 LR 120
>TC11350 similar to UP|Q9LJP7 (Q9LJP7) Genomic DNA, chromosome 3, P1 clone:
MIG10, partial (18%)
Length = 1118
Score = 37.4 bits (85), Expect = 0.005
Identities = 41/179 (22%), Positives = 74/179 (40%), Gaps = 11/179 (6%)
Frame = -3
Query: 180 QHVMNSAIVH---------IMWSIWLECNNKYFDGVQ-KPMSTLFNTILAEVLRLSFMLD 229
Q ++N ++ H +W+IW N F + P++T+F ++ + +
Sbjct: 1038 QFILNHSLNHEEDLATLSFTLWAIWKNRNRVIFQLEEPNPVNTIF-----QIRHMQQDAN 874
Query: 230 IVKGASSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGS-VVGSPSCGSI 288
++ + S + R + V R+ W PP G K+N D S SPSC ++
Sbjct: 873 LMSTSQSNKQTTRERNIN-------VTSARDRSWRPPPLGVYKLNSDASWKAPSPSC-TV 718
Query: 289 GVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRA 347
GV+ R + + A + + +E A + A+ L L I E+D +I A
Sbjct: 717 GVVIRDNLGLLISGTASRPLAPSPIVSEALALREGLILARSLGLDRILSESDCQPLIEA 541
>AV412895
Length = 405
Score = 36.6 bits (83), Expect = 0.008
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Frame = +1
Query: 93 LWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCY--IVSICCCFCRKQAETSSHIFLQCP 150
+W P WR L ++ T DNL KR + C C E+ SH+ C
Sbjct: 82 IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCA 261
Query: 151 VTLQLW----DWLLKATDQHLD 168
++ +W WL +T Q D
Sbjct: 262 ESMLIWYECFAWLGVSTAQVSD 327
>TC20198 similar to UP|Q9ZPU0 (Q9ZPU0) At2g13980 protein, partial (13%)
Length = 630
Score = 35.8 bits (81), Expect = 0.014
Identities = 46/159 (28%), Positives = 68/159 (41%), Gaps = 13/159 (8%)
Frame = +3
Query: 263 WVPPHGGCMKINCDGSVVGSPSCG-SIGVIFRASQTMFCGAFAQNIGYATALEA----EY 317
W PP G K+N D SV+ S G S+ V A +F QN + +L + Y
Sbjct: 93 WPPPPDGVFKLNFDTSVLASS*AGLSLVVRDCAG*EVFS---IQN*VFGASLISRDG*SY 263
Query: 318 SACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPW-KMHIRWHNCLLFCRSIRSLC 376
S + +L LT++ ++TD N+ V W K H+ ++CR+ LC
Sbjct: 264 SVLV-------DLFLTSVILKTDCYNLF--------VQWKKKHVSASYFGVYCRTFFLLC 398
Query: 377 THVN-------REGNLVADALAKNGQGLALYSSHPLAFI 408
+ R GN VA+ LAK +SSH +I
Sbjct: 399 ACFSFVDLSFVRRGNKVANDLAK-----LAFSSHGYVWI 500
>TC11323
Length = 657
Score = 34.3 bits (77), Expect = 0.040
Identities = 23/83 (27%), Positives = 36/83 (42%)
Frame = +2
Query: 263 WVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMF 322
W+ P G K+N DGS +G+ G + R + F F+ + A ++ A +
Sbjct: 5 WLKPVHGRFKLNFDGSSLGNRGNAGGGGLLRDGSSNFIFGFSIFLAVAQIMKLSLCAILE 184
Query: 323 AIEKAKELHLTNIWIETDSVNVI 345
+ K L I IE DS V+
Sbjct: 185 GLLVCKPLGYDGIGIECDSNIVV 253
>BP080173
Length = 382
Score = 33.1 bits (74), Expect = 0.090
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -2
Query: 263 WVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMF 322
W P G +KIN DGS S +C + G + + F + +G AE
Sbjct: 345 WPVPMEGWIKINIDGSFAPSSNCAACGGVMWDHEGTFITGASVRLGCYFINHAELWGIFH 166
Query: 323 AIEKAKELHLTNIWIETDSVNVI 345
+ A+ I +E+DS V+
Sbjct: 165 GAKIAQARGFKKILVESDSSFVV 97
>BI417841
Length = 617
Score = 32.7 bits (73), Expect = 0.12
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Frame = +1
Query: 276 DGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNI 335
DGS G+P G + RA + +G T +AEY + ++ A E +I
Sbjct: 151 DGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHAHEQGYQHI 327
Query: 336 WIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSL--------CTHVNREGNLVA 387
++ DS V + + WK R N C + L HV R+ N A
Sbjct: 328 NVKGDSQLVCKQVEGS----WK--ARNPNIASLCNEAKELKSKFQSFDINHVPRQYNSEA 489
Query: 388 DALAKNGQGL 397
D A G L
Sbjct: 490 DVQANLGVNL 519
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.139 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,986,590
Number of Sequences: 28460
Number of extensions: 169327
Number of successful extensions: 1455
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of query: 427
length of database: 4,897,600
effective HSP length: 93
effective length of query: 334
effective length of database: 2,250,820
effective search space: 751773880
effective search space used: 751773880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149206.10