TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149205.3 + phase: 0 /pseudo
         (523 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP041113                                                               50  1e-06
AV428268                                                               47  8e-06
AV414139                                                               47  1e-05
BP056597                                                               44  5e-05
AU089037                                                               37  0.008
TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane pro...    36  0.018
AV421977                                                               33  0.087
TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, parti...    33  0.11
BP028574                                                               33  0.15
BP030058                                                               32  0.19
AV411435                                                               32  0.19
TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, parti...    31  0.43
CN825238                                                               31  0.57
TC18552 similar to UP|Q9FIM2 (Q9FIM2) Cell division protein FtsH...    30  1.3
AV408145                                                               30  1.3
TC16404 similar to UP|P93320 (P93320) Cdc2MsC protein, partial (...    29  1.6
BP033767                                                               28  2.8
AV766417                                                               28  2.8
BP066014                                                               28  2.8
TC13572                                                                28  3.7

>BP041113 
          Length = 503

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 45/140 (32%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
 Frame = +1

Query: 371 GGW-WGAWQWRRHLWVWEEDLV-EECGDLLLT------VSLQELETDRWMWLSDQIRGYT 422
           GGW  G W W+     W   LV  E G L L       V L E   D+W+WL      YT
Sbjct: 100 GGWNHGVWTWKLS---WRRALVGRELGWLELMMKDLSGVCLSEGVEDKWLWLPGGT--YT 264

Query: 423 VRGVYDMLTSQE*PHVHQNMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITF-VE 481
           V   Y  L +            IW    P  V   A R L  RLPT  NL  R +     
Sbjct: 265 VNSAYSFLQAPTLADTDPIFATIWRTVAP-SVKAFAWRCLLGRLPTYDNLIKRQVVVDPA 441

Query: 482 DRICVTGCGHVEDTTHMFLS 501
             +C    G VE  TH+  +
Sbjct: 442 MTVCKFCQGEVESVTHLLFA 501


>AV428268 
          Length = 429

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 31/101 (30%), Positives = 46/101 (44%)
 Frame = +3

Query: 421 YTVRGVYDMLTSQE*PHVHQNMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFV 480
           Y+V+  YD L            +L+W  +VP     L+ ++L +R+ TK NL  RG+  V
Sbjct: 6   YSVKSAYDFLHGCANAQWDNIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGV--V 179

Query: 481 EDRICVTGCGHVEDTTHMFLSCPIFGALLSMVQTWVGVEGV 521
              +C       E T H+  SCPI   + S +    GV  V
Sbjct: 180 ISNVCPLCSLDEESTDHLLFSCPIV*RIWSKISE*FGVFSV 302


>AV414139 
          Length = 309

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 33/101 (32%), Positives = 42/101 (40%), Gaps = 6/101 (5%)
 Frame = -2

Query: 368 VGGGGWW--GAWQW----RRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGY 421
           +GG G W  G W+W    RR L V E+    +    L  V LQ+   DRW W  D    Y
Sbjct: 308 IGGMGQWHNGVWEWEFRWRRELSVREQRQEADLIQALAGVCLQQGTEDRWKWTLDTEDIY 129

Query: 422 TVRGVYDMLTSQE*PHVHQNMELIWHKQVPLKVSILALRLL 462
           TVR  Y +L         +  E +W    P   +    RLL
Sbjct: 128 TVRSAY*LLLDPIADSDSEVYEKVWVGIAPSNANAFVWRLL 6


>BP056597 
          Length = 414

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
 Frame = +3

Query: 379 WRRHLWVWE---------EDLVE--ECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVY 427
           W  + WVW+         ED+++      ++ + SL   + D W+W+ +    Y+V+  Y
Sbjct: 69  WLENKWVWDFSWKNPISGEDVLKLGVMKQIVSSFSLINGKKDTWVWILEGDGQYSVKSAY 248

Query: 428 DMLTSQE*PHVHQNMELIWHKQVPLKVSILALRLLRDRLPTKSNLADRGI 477
           D+L+  +          +W    P     L  R+  DR+ TK NL+ R +
Sbjct: 249 DLLSGLDTTIGISVFSKLWKACAPSNAVALGWRVFLDRIQTKDNLSRRHV 398


>AU089037 
          Length = 245

 Score = 37.0 bits (84), Expect = 0.008
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 445 IWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTT-HMFLSCP 503
           +W    P      A RL+ DR+ T+ NL  R +    +      C   E+++ H+F SCP
Sbjct: 191 LWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESSSHLFFSCP 12

Query: 504 I 504
           +
Sbjct: 11  L 9


>TC15408 similar to UP|Q9LIC2 (Q9LIC2) Multispanning membrane protein-like,
           partial (10%)
          Length = 879

 Score = 35.8 bits (81), Expect = 0.018
 Identities = 22/76 (28%), Positives = 31/76 (39%), Gaps = 4/76 (5%)
 Frame = -1

Query: 375 GAWQW----RRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDML 430
           G W W    RR+    E  LV +  +LL +V L E   D W W ++    YTV+  Y  L
Sbjct: 774 GVWTWSFIRRRNPSTRENLLVADLCNLLESVPLSEDTNDSWSWTANPEGQYTVQTAYKFL 595

Query: 431 TSQE*PHVHQNMELIW 446
            +            +W
Sbjct: 594 RASSNEFTDPIFHFVW 547


>AV421977 
          Length = 535

 Score = 33.5 bits (75), Expect = 0.087
 Identities = 13/31 (41%), Positives = 18/31 (57%)
 Frame = -1

Query: 369 GGGGWWGAWQWRRHLWVWEEDLVEECGDLLL 399
           GGGGW G W+WR+  WV      EE   +++
Sbjct: 271 GGGGWRGWWKWRKAGWVSGSPEEEEVNRVMI 179


>TC14123 similar to UP|Q93X25 (Q93X25) 2-Cys peroxiredoxin, partial (89%)
          Length = 1130

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 17/45 (37%), Positives = 20/45 (43%), Gaps = 8/45 (17%)
 Frame = -1

Query: 373 WW----GAWQWRRHLWVWEE----DLVEECGDLLLTVSLQELETD 409
           WW    G+W WR   WVWE      L  E  + L    L  LET+
Sbjct: 173 WWREG*GSWGWRERWWVWERRGV*GLASERREKLQNTPLTVLETE 39


>BP028574 
          Length = 454

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +3

Query: 409 DRWMWLSDQIRGYTVRGVYDMLTSQE*PHVHQNMELIWHKQVPLKVSILALRLLRDRLPT 468
           D W+W+ D    +TV+  Y+ L  +           +W  + P     LA R+  +R+P 
Sbjct: 261 DSWVWIKDGSGSFTVKSAYEELHGEIQEIEDNFFRKLWQSKAPSNSIALAWRVGLNRVPC 440

Query: 469 KSNL 472
            + L
Sbjct: 441 MAEL 452


>BP030058 
          Length = 455

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 373 WWGAWQWRRHLWVWE 387
           WWG W+W R  W W+
Sbjct: 324 WWGRWRWWRWRWAWQ 368


>AV411435 
          Length = 426

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 20/58 (34%), Positives = 24/58 (40%)
 Frame = +3

Query: 445 IWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGHVEDTTHMFLSC 502
           IW  QVP KV     R   + +P K NL  R +    D  C       ED  H  L+C
Sbjct: 177 IWGAQVPKKVRSFLWRAANNAIPVKRNLKRRNMG--RDDFCPICNKGPEDINHALLAC 344


>TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, partial (10%)
          Length = 901

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 362 CEEHVLVGGGGWWGAWQWRRHLWVWE 387
           C +   VGGG     W+W+ + W WE
Sbjct: 538 CGQGAAVGGGHDSSGWRWKHYQWEWE 615


>CN825238 
          Length = 692

 Score = 30.8 bits (68), Expect = 0.57
 Identities = 17/47 (36%), Positives = 24/47 (50%)
 Frame = +3

Query: 445 IWHKQVPLKVSILALRLLRDRLPTKSNLADRGITFVEDRICVTGCGH 491
           +W   VP K+   A R+ R+ +P + NL  RGI    +  C T C H
Sbjct: 534 LWRTPVPNKMKHFAYRVARNIIPCRENLQRRGIAVQNE--CPT-CNH 665


>TC18552 similar to UP|Q9FIM2 (Q9FIM2) Cell division protein FtsH, partial
           (10%)
          Length = 643

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 369 GGGGWWGAWQWRRHLWVWEEDLVEECGDLLLTVSL 403
           G GGWW  WQW+  +        +E G LLL + +
Sbjct: 282 GKGGWWWRWQWQPII------QAQEIGALLLQLGI 196


>AV408145 
          Length = 422

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = -2

Query: 365 HVLVGGGGWWGAWQWR 380
           H + GGGGWW  W+WR
Sbjct: 91  HHVGGGGGWW-RWEWR 47


>TC16404 similar to UP|P93320 (P93320) Cdc2MsC protein, partial (15%)
          Length = 584

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = +1

Query: 373 WWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRW-----MWLS 415
           WW +W WR  LW W   L      +    S   L+ D W     +WL+
Sbjct: 100 WWSSW-WRWRLWGWSSKLSSTRRSIWGLSSWSWLKHDGWKSQSTVWLA 240


>BP033767 
          Length = 541

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 369 GGGGWWGAWQWRRHLWVW 386
           GGGG W  W WR   W W
Sbjct: 257 GGGGKWVFWVWR*GRW*W 204


>AV766417 
          Length = 440

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 369 GGGGWWGAWQWRRHLWV--WEEDLVEECGDLLLTVSLQELETDR 410
           GGG WW   +W R LW+  W   LV  C D+ + ++L    ++R
Sbjct: 243 GGGRWW-CERWGRWLWLGRWMRVLVVGC-DISICITLLAPASER 118


>BP066014 
          Length = 535

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = -2

Query: 362 CEEHVLVGGGGWWGAWQWRRHLWV 385
           C++    GGG WW   +WRR++ V
Sbjct: 162 CKQESFEGGGCWWW**EWRRYVRV 91


>TC13572 
          Length = 534

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 16/60 (26%), Positives = 27/60 (44%)
 Frame = -3

Query: 371 GGWWGAWQWRRHLWVWEEDLVEECGDLLLTVSLQELETDRWMWLSDQIRGYTVRGVYDML 430
           G W   ++WRR L   E D ++     ++ V L     D+W+W   +   Y+V   +  L
Sbjct: 214 GVWNWDFRWRRPLAGRELDWLQALSLDIVRVPLLAGVPDKWVWKPSEDGSYSVNSAFIFL 35


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.364    0.164    0.688 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,274,551
Number of Sequences: 28460
Number of extensions: 194107
Number of successful extensions: 3774
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2130
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 1261
Number of HSP's gapped (non-prelim): 2637
length of query: 523
length of database: 4,897,600
effective HSP length: 94
effective length of query: 429
effective length of database: 2,222,360
effective search space: 953392440
effective search space used: 953392440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 57 (26.6 bits)