TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149205.17 + phase: 0 /pseudo
         (626 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV776708                                                               32  0.23
TC15617 similar to GB|AAN28738.1|23505757|AY143799 At2g02050/F14...    29  2.0
BP079385                                                               29  2.0
TC19099 similar to UP|QUA1_ARATH (Q9LSG3) Glycosyltransferase QU...    28  5.8
AV406815                                                               27  7.5
TC12380 similar to GB|BAC55960.1|28071265|AB087408 actin binding...    27  7.5
TC17380 similar to UP|Q84UH4 (Q84UH4) Dehydroascorbate reductase...    27  7.5
TC15299 similar to UP|Q84MJ5 (Q84MJ5) Methylmalonate semialdehyd...    27  9.8
AU089302                                                               27  9.8
TC9564                                                                 27  9.8

>AV776708 
          Length = 603

 Score = 32.3 bits (72), Expect = 0.23
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -2

Query: 479 KCEPSAKIPPEFPSHKLVGCTVTIGKSSDDGSNTSQGDKIVDDDAPSGSIPKLLKT 534
           K E    +PP FP  ++VG      KS DDGS + + +   D D P G +PKL+ +
Sbjct: 569 KVENDVDVPPGFPP-QVVGTV----KSFDDGSRSVKVEN--DADVPPGFLPKLVSS 423


>TC15617 similar to GB|AAN28738.1|23505757|AY143799 At2g02050/F14H20.12
           {Arabidopsis thaliana;}, partial (85%)
          Length = 573

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 25/85 (29%), Positives = 35/85 (40%), Gaps = 8/85 (9%)
 Frame = +3

Query: 538 EKSVEDGLLAEKYVDGGAPLPAKDNTP-------TPLIFVDDCKHVLEDGNESEEARLST 590
           E  VE  LL +K   G         TP        PL + D+C H+L   N+  +A    
Sbjct: 12  ESGVELRLLKKKMATGEGSSKKMIATPEEMVEARVPLAYRDECAHLLIPLNKCRQAEFYL 191

Query: 591 DTICQSENQTESYSYLS-ELIVEEL 614
              C  EN+  SY     EL++E +
Sbjct: 192 PWKC--ENERHSYEKCEYELVMERM 260


>BP079385 
          Length = 271

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 149 FGGILSLWSSCFSPNLKIRRLERWNRSSSALKAKR 183
           F   LSLW +C S ++ I   E+W +S    K+KR
Sbjct: 141 FHSKLSLWLTCRS*SVTINIKEKWGKSWGTQKSKR 245


>TC19099 similar to UP|QUA1_ARATH (Q9LSG3) Glycosyltransferase QUASIMODO1  ,
           partial (35%)
          Length = 597

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 527 SIPKLLKTMSFEKSVEDGLLAEKYVDGGAPLPAKDNTP 564
           SIPK L  +S     E    AEKY D G P P +   P
Sbjct: 191 SIPKSLHCLSMRLMEERIAHAEKYSDEGKPTPPEVEDP 304


>AV406815 
          Length = 426

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +1

Query: 279 CWTLMYNHPFTWFK---FGFGKGSKIC 302
           CWT+ + HP  W K      G+ +++C
Sbjct: 175 CWTIQHFHPLAWIKDVEKSMGRWTQLC 255


>TC12380 similar to GB|BAC55960.1|28071265|AB087408 actin binding protein
           {Arabidopsis thaliana;} , partial (9%)
          Length = 800

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 14/43 (32%), Positives = 23/43 (52%)
 Frame = +1

Query: 574 KHVLEDGNESEEARLSTDTICQSENQTESYSYLSELIVEELNR 616
           KH  E+G E E+ +  TD I + +++ E      +LI   +NR
Sbjct: 433 KHQDEEGTEEEQFKSFTDAINEEDSEEEEEKEEVKLISSIINR 561


>TC17380 similar to UP|Q84UH4 (Q84UH4) Dehydroascorbate reductase, complete
          Length = 875

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 16/36 (44%), Positives = 18/36 (49%), Gaps = 2/36 (5%)
 Frame = +2

Query: 481 EPSAKIPPEFPS--HKLVGCTVTIGKSSDDGSNTSQ 514
           EPS   PPEF S   K+ G  V+  KS D    T Q
Sbjct: 344 EPSLVTPPEFASVGSKIFGSFVSFLKSKDANDGTEQ 451


>TC15299 similar to UP|Q84MJ5 (Q84MJ5) Methylmalonate semialdehyde
           dehydrogenase (Fragment), partial (31%)
          Length = 570

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 3/21 (14%)
 Frame = +2

Query: 141 NHFGRCHCFGGIL---SLWSS 158
           NH  RCHC  G+L     WSS
Sbjct: 2   NHLSRCHCRHGVLQGGDFWSS 64


>AU089302 
          Length = 327

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = -2

Query: 140 NNHFGRCHCFGGILSLW 156
           +NH G C C  G L+LW
Sbjct: 200 HNHVGFCACLAGYLALW 150


>TC9564 
          Length = 646

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 29/94 (30%), Positives = 39/94 (40%), Gaps = 3/94 (3%)
 Frame = -3

Query: 397 YHIELLCNSDLIKMFLVNQTDPKAIAWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMK 456
           Y + L  NS  I         P A +  ++SR  S  S  FPS+     +T   +   M 
Sbjct: 485 YQLLLTSNSSTIHSLNSIT*SPSANSCIHFSRSSSLNST-FPSEVGGFSLTISASGQKMT 309

Query: 457 SVLRSQ---GFVTNFEPRKRSASSSKCEPSAKIP 487
           S   S      VTN   +KR+ SSS+  PS   P
Sbjct: 308 SAFSSDEGNSGVTNKSSKKRNESSSRVFPSMLSP 207


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.350    0.153    0.557 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,740,511
Number of Sequences: 28460
Number of extensions: 210042
Number of successful extensions: 1941
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of query: 626
length of database: 4,897,600
effective HSP length: 96
effective length of query: 530
effective length of database: 2,165,440
effective search space: 1147683200
effective search space used: 1147683200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 58 (26.9 bits)