TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149205.14 - phase: 0 /pseudo
         (890 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                                70  1e-12
TC15905 similar to GB|AAP37829.1|30725614|BT008470 At5g12470 {Ar...    29  2.9

>TC18710 
          Length = 843

 Score = 70.1 bits (170), Expect = 1e-12
 Identities = 35/98 (35%), Positives = 56/98 (56%), Gaps = 1/98 (1%)
 Frame = +2

Query: 37  RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
           R I +N ++  E  H +         +  +KLD++KAYDR++W +L+  ++  GFS  W+
Sbjct: 479 RQIQDNLLIVQEAFHAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWV 658

Query: 97  QWMVVSTESVDYNVLVNAEHVGPVIL-GRGLRQGGPLS 133
           + +++    V YN  +N   VGP +L  RGLRQG P S
Sbjct: 659 KMIMILVSGVSYNYKINGV-VGPKLLPQRGLRQGDPFS 769


>TC15905 similar to GB|AAP37829.1|30725614|BT008470 At5g12470 {Arabidopsis
           thaliana;}, partial (27%)
          Length = 693

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/29 (37%), Positives = 14/29 (47%)
 Frame = +3

Query: 409 VSVGSWSHLSSWN*LAELGKAFYV*SSWW 437
           + + SW+H   W  LA LG   Y    WW
Sbjct: 249 LEIHSWAHYCGWIMLAGLGSRRYAIRQWW 335


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.368    0.164    0.641 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,379,977
Number of Sequences: 28460
Number of extensions: 268088
Number of successful extensions: 3207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1473
Number of HSP's gapped (non-prelim): 1875
length of query: 890
length of database: 4,897,600
effective HSP length: 98
effective length of query: 792
effective length of database: 2,108,520
effective search space: 1669947840
effective search space used: 1669947840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 59 (27.3 bits)