TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149197.7 - phase: 0 
         (218 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10885                                                                28  0.93
TC18409 weakly similar to UP|Q944A5 (Q944A5) AT3g01590/F4P13_13,...    26  4.6
AI967909                                                               26  6.1
BP036492                                                               26  6.1
TC18421 similar to UP|Q9ZV23 (Q9ZV23) At2g28910 protein (At2g289...    25  7.9
TC10596                                                                25  7.9

>TC10885 
          Length = 573

 Score = 28.5 bits (62), Expect = 0.93
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 31  TVSAFWALQEVWPKSLEKV 49
           TV+A W LQE WP+++ ++
Sbjct: 403 TVTAHWGLQEQWPEAIHEI 347


>TC18409 weakly similar to UP|Q944A5 (Q944A5) AT3g01590/F4P13_13, partial
           (51%)
          Length = 609

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = +1

Query: 150 LWMEERKHRKSSKKNNEVCKDLITEKAGAFVVAPCPHDGTCPLVKSGKYCHFVQRLERTS 209
           LW  +R     S  +N+ C DLI +  G     PC  +    +  S      + R+  T 
Sbjct: 397 LWSLDRDPSPLSPLDNQSCVDLILKSTGFDFKTPCSXELRLRIFLSAGKLILIPRVRNTD 576

Query: 210 SQ 211
           ++
Sbjct: 577 NK 582


>AI967909 
          Length = 355

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 147 SYILWMEERKHRKSSKKNNEVCKDLIT 173
           +Y  W+ ER+   + ++ N++C++L T
Sbjct: 254 AYRAWLRERRESSNHEELNQLCRELQT 334


>BP036492 
          Length = 552

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 9/35 (25%), Positives = 19/35 (53%)
 Frame = +3

Query: 87  DISKSERGHDLVIASYVLGEIPSIKDRITILRQLW 121
           D   S  GHDL+   Y + ++  + ++   +R++W
Sbjct: 426 DRHDSRYGHDLLYNEYYMAQLQELLNKYQNVREIW 530


>TC18421 similar to UP|Q9ZV23 (Q9ZV23) At2g28910 protein
           (At2g28910/F8N16.20), partial (28%)
          Length = 553

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +1

Query: 36  WALQEVWPKSLEKVNIIEPSQSMQ 59
           W LQEVWP     V++ E S+S +
Sbjct: 424 WGLQEVWPCWAS*VSVQELSESQR 495


>TC10596 
          Length = 540

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = -2

Query: 121 WDQTQDVLVLVEPGTPHGS---SIIAQMRSYI----LWMEERKHRKSSKK 163
           WD T      V+P TPH S   S  +  R+++    L+++ R+  ++SK+
Sbjct: 326 WDPTFPSTFRVDPHTPHASGPHSFQSHSRAHVPFSLLFLKRRRQWRNSKQ 177


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,690,578
Number of Sequences: 28460
Number of extensions: 44663
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of query: 218
length of database: 4,897,600
effective HSP length: 87
effective length of query: 131
effective length of database: 2,421,580
effective search space: 317226980
effective search space used: 317226980
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)