Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149197.3 - phase: 0 
         (257 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19871                                                                39  9e-04
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k...    37  0.003
TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransfer...    36  0.006
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti...    36  0.006
BP033767                                                               36  0.007
AV411591                                                               34  0.022
TC12614                                                                34  0.022
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-...    33  0.037
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa...    33  0.037
TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)         33  0.037
AW720347                                                               33  0.048
TC16697                                                                33  0.063
TC10830 weakly similar to UP|Q94JL9 (Q94JL9) At1g68400/T2E12_5, ...    32  0.083
AV777934                                                               32  0.083
TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete              32  0.11
AV409241                                                               32  0.11
BP047567                                                               32  0.11
AV409090                                                               32  0.11
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li...    32  0.11
AV408480                                                               32  0.14

>TC19871 
          Length = 528

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 15/24 (62%), Positives = 20/24 (82%)
 Frame = +3

Query: 214 DGELSYMRAHFERVIGSKDSETYY 237
           +GE+ YMRA +ERV+G KDSE +Y
Sbjct: 36  EGEIMYMRARYERVVGFKDSEAFY 107


>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
           partial (16%)
          Length = 486

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 7   SQTTTGQPPPSPT-TGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNS 54
           SQ  T  P  SPT T  PPPSP  V   PPT        P +S S++ S
Sbjct: 88  SQQPTHSPSTSPTSTTTPPPSPTKVTENPPTAPSTSTKSPTSSASEEPS 234



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 7   SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANS 48
           S +TT QP  SPT+    PSP+  +T PPT     +  P ++
Sbjct: 247 STSTTQQPKHSPTSPPASPSPSPPSTKPPTAMASPSTSPLSA 372



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/53 (37%), Positives = 24/53 (44%), Gaps = 2/53 (3%)
 Frame = +1

Query: 7   SQTTTGQPPPSPT--TGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNK 57
           S T+T  PPPSPT  T  PP +P S +T  PT        P N  +      K
Sbjct: 118 SPTSTTTPPPSPTKVTENPPTAP-STSTKSPTSSASEEPSPPNPSTSTTQQPK 273



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = +1

Query: 5   HESQTTTGQPPPSPTTGQPPPSPASVNTCP 34
           H   +    P PSP + +PP + AS +T P
Sbjct: 274 HSPTSPPASPSPSPPSTKPPTAMASPSTSP 363


>TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
           partial (25%)
          Length = 563

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 7   SQTTTGQPPPSPTTGQPPPSPASVNTCPPT 36
           S TTT  PPP P +  PPPS  S +  PP+
Sbjct: 112 SSTTTPPPPPPPPSAPPPPSNPSPSNAPPS 201



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 2/58 (3%)
 Frame = +1

Query: 9   TTTGQPPP--SPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKFRS 64
           T   +PPP  S TT  PPP P      PP+   P N  P+ S ++    N   G   S
Sbjct: 82  TPISKPPPTTSSTTTPPPPPPPPSAPPPPSNPSPSNAPPS*SPTRPTKPNPQIGSSTS 255


>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
          Length = 1294

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 20/65 (30%), Positives = 30/65 (45%)
 Frame = +2

Query: 16  PSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKFRSMFRSFPIIVPS 75
           P P++  PPP P+  N  PPT   P +  P   K    ST++   K  S      +++PS
Sbjct: 215 PDPSSPPPPPPPSPPNANPPTTLTPPSSTPQTQKKTSPSTHQKSPKASS------LLLPS 376

Query: 76  CKMPT 80
              P+
Sbjct: 377 TTAPS 391


>BP033767 
          Length = 541

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 8/78 (10%)
 Frame = +3

Query: 10  TTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKF------- 62
           T G  PPS     PPPSP   +  PP  + P +  P  + + QN++   F  +       
Sbjct: 159 TQGSLPPSQPPNPPPPSP---SPSPPNPKYPFSSTPTTT-TTQNASTPFFPTYPSPPPPP 326

Query: 63  -RSMFRSFPIIVPSCKMP 79
             S F SFP  + S  +P
Sbjct: 327 SPSSFASFPANISSLILP 380



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/64 (31%), Positives = 25/64 (38%), Gaps = 19/64 (29%)
 Frame = +1

Query: 6   ESQTTTGQPPPSPTTGQ------------------PPPSPASVNTCPPTVRM-PINLQPA 46
           ++Q T   PPP P   +                  PPPSP S  T PP+  + P N  P 
Sbjct: 226 QTQNTHFPPPPQPPPPKMPPHLSSPHTHLHHHLLLPPPSPPSPPTSPPSSSLKPPNPNPP 405

Query: 47  NSKS 50
            S S
Sbjct: 406 TSSS 417



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 14  PPPSPTTGQPPPSPA--SVNTCPPTVRM 39
           P PSP++  PP S A  +  T PPT R+
Sbjct: 439 PAPSPSSLSPPSSTADAAAKTTPPTRRL 522



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 4   LHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKS 50
           LH         PPSP T  P  S    N  PPT      L P+ + S
Sbjct: 310 LHHHLLLPPPSPPSPPTSPPSSSLKPPNPNPPTSSSASPLPPSPAPS 450



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 16  PSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFG 60
           PSP    PPPSP+S  + P  +   I  Q     SK  S++KL G
Sbjct: 306 PSPP---PPPSPSSFASFPANISSLILPQ----TSKPKSSHKLLG 419


>AV411591 
          Length = 258

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 7   SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMP 40
           S + +  PPP PTT  P PSP S++T   + + P
Sbjct: 118 SPSASSSPPPGPTTPPPAPSPLSLSTVAVSSKSP 219



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
 Frame = +1

Query: 15  PPSPT-TGQPPPSPASVNTCPPTVRMPINLQPANSKSK 51
           PPSP+ +  PPP P    T PP    P++L      SK
Sbjct: 112 PPSPSASSSPPPGP----TTPPPAPSPLSLSTVAVSSK 213


>TC12614 
          Length = 577

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 18/42 (42%), Positives = 21/42 (49%)
 Frame = +2

Query: 9   TTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKS 50
           TT+  P P+P+T  P PS    N  PP  R PI   P  S S
Sbjct: 206 TTSSSPSPNPSTNTPSPS----NLTPPPPRNPIPTSPTASTS 319


>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
           protein, partial (41%)
          Length = 522

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/49 (34%), Positives = 27/49 (54%)
 Frame = +2

Query: 3   SLHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSK 51
           S + ++TT+    P+ TT +P PSPA  +T       P +  PA+S +K
Sbjct: 98  SSNPNKTTSTTSSPTSTTPKPSPSPAPSSTLRAPSSSPASASPASSPTK 244


>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
           (33%)
          Length = 594

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 17/51 (33%), Positives = 23/51 (44%)
 Frame = +1

Query: 7   SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNK 57
           S   T  PP  P++  PPP+ ++ NTC         +Q  N K KQ    K
Sbjct: 331 SPPATNVPPSLPSSTPPPPTSSTTNTCS-------QMQNQNQKQKQQKKRK 462



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 4   LHESQTTTGQPPPSPTTGQPPPS---PASVNTCPPTVRMP 40
           L  S T    PPP  T  + PPS   PA+  + PPT   P
Sbjct: 91  LPSSATHANPPPPPSTAARTPPSSAPPATPKSTPPTSSPP 210


>TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)
          Length = 759

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 15/32 (46%), Positives = 18/32 (55%)
 Frame = +2

Query: 7   SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVR 38
           ++T    PPPSPT   PPP+ AS  T   T R
Sbjct: 215 TKTKNSPPPPSPTPKPPPPTRASTTTTATTWR 310



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/32 (43%), Positives = 16/32 (49%), Gaps = 4/32 (12%)
 Frame = +2

Query: 9   TTTGQPPPSPTT----GQPPPSPASVNTCPPT 36
           TTT  P PSP+T      PPP   +    PPT
Sbjct: 179 TTTAAPSPSPSTTKTKNSPPPPSPTPKPPPPT 274



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +2

Query: 14  PPPSPT--TGQPPPSPASV---NTCPPTVRMPINLQPANSKSKQNST 55
           PPP PT  T  P PSP++    N+ PP    P    P  + +   +T
Sbjct: 161 PPPLPTTTTAAPSPSPSTTKTKNSPPPPSPTPKPPPPTRASTTTTAT 301


>AW720347 
          Length = 423

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 24/64 (37%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
 Frame = +3

Query: 9   TTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKL----FGKFRS 64
           TTT  P  SP++  PPPSP+S N  P +        P+ S+   NST+ +     GK  S
Sbjct: 99  TTTTSPTSSPSSA-PPPSPSSPNGAPAS--------PSPSRRSVNSTSLMSTPPAGKLLS 251

Query: 65  MFRS 68
             RS
Sbjct: 252 PLRS 263


>TC16697 
          Length = 635

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 15  PPSPTTGQPPPSPASVN-TCPPTVRMPINLQPANSKSK 51
           PPS ++  PPP+P+S + T P     P +L PA+S S+
Sbjct: 494 PPSNSSQSPPPNPSSTDPTSPAPQPHPSHLSPASSSSQ 381


>TC10830 weakly similar to UP|Q94JL9 (Q94JL9) At1g68400/T2E12_5, partial
           (24%)
          Length = 702

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 19/52 (36%), Positives = 26/52 (49%)
 Frame = +3

Query: 7   SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKL 58
           S  TT  P  SP+  + PPSPAS     PT   P   +P  + S+ +S + L
Sbjct: 474 SSPTTTSPVTSPS--RSPPSPASTALTSPTTASPARFRPP*TTSRGSSHSAL 623


>AV777934 
          Length = 265

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 3   SLHESQTTTGQPPPSPTTGQPPPSPAS 29
           +L  S TTTG P PSP+   PP + AS
Sbjct: 166 TLPPSHTTTGSPSPSPSASTPPSTSAS 246



 Score = 31.2 bits (69), Expect = 0.18
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +1

Query: 4   LHESQTTTGQ----PPPSPT----TGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNST 55
           LH SQT T      PPP  T    T  PPP  +S  T PP+     +  P+ S S   ST
Sbjct: 58  LHLSQTLTPPSAMAPPPPMTAITATSFPPPPDSSTKTLPPSHTTTGSPSPSPSASTPPST 237

Query: 56  N 56
           +
Sbjct: 238 S 240



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 9   TTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTN 56
           +T   PP   TTG P PSP++            +  P+ S S  NS N
Sbjct: 157 STKTLPPSHTTTGSPSPSPSA------------STPPSTSASNSNSEN 264


>TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete
          Length = 1950

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 3  SLHESQTTTGQPPPSPTTGQPPPSPASVNT 32
          SL + QT+    PP PT  QPPP P S  +
Sbjct: 66 SLAQPQTSLHS*PPQPTQPQPPPPPTSATS 155


>AV409241 
          Length = 282

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/45 (37%), Positives = 20/45 (43%)
 Frame = +2

Query: 11  TGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNST 55
           T  PPP P T  PPP+P+     PP    P  L    S+    ST
Sbjct: 116 TPPPPPPPATVSPPPTPS-----PPAAATPSPLSAKPSRKIPTST 235



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = +2

Query: 5   HESQTTTGQPP-------PSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSK 51
           H       QPP       P P T  PPP PA+V+  PPT   P    P+   +K
Sbjct: 50  HHQPHVQVQPPSHSPTKTPPPPTPPPPPPPATVSP-PPTPSPPAAATPSPLSAK 208


>BP047567 
          Length = 480

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
 Frame = +2

Query: 8   QTTTGQPPPSPTTGQPPPSP--------------ASVNTCPPTVRMPINLQPANSKSKQN 53
           QTT   P   P+    PPSP               S+    P  ++P++ QP  +     
Sbjct: 119 QTTPPLPTSLPSPSPLPPSPRRRRPRLFPWLSSLPSLTPSSPATKIPLSCQPVRASEPLR 298

Query: 54  STNKLFGKFRS--MFRSFPIIVPSCKMPTMNGNH-----RTSETIIHGGIRI 98
           S+     +  S  M  + P  +P+ ++P  +G       R   T++  GIRI
Sbjct: 299 SSTGPASEVGSGRMVVTDPTGIPAARIPVRDGVRLGFLMRAGGTVVRLGIRI 454


>AV409090 
          Length = 436

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +1

Query: 9   TTTGQPPPSPTTGQPPPSP-----ASVNTCPPT 36
           T+   PP SPT   P PSP     A+ NT PPT
Sbjct: 307 TSPTSPPSSPTPWSPSPSPAPAPAAATNTTPPT 405


>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
           2 precursor (Phytocyanin-like protein), partial (31%)
          Length = 1482

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/46 (45%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
 Frame = +3

Query: 12  GQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPAN--SKSKQNST 55
           G P PSPTTG  PPS +  +  P     P +L PA+  S S  NST
Sbjct: 864 GPPAPSPTTGDTPPSASGPDVSPSGT--PSSL-PADTPSSSSNNST 992


>AV408480 
          Length = 262

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 16/35 (45%), Positives = 18/35 (50%)
 Frame = +2

Query: 14  PPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANS 48
           PP S T+  PPP P S +  PPT   P N    NS
Sbjct: 134 PPSSTTSPPPPPPPPSPSPQPPTRPAPQNGPDPNS 238



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 7   SQTTTGQPPPSPT--TGQPPPSPASVNTCPPTVRMPINLQP 45
           S TT+  PPP P   + QPP  PA  N   P    P+  +P
Sbjct: 140 SSTTSPPPPPPPPSPSPQPPTRPAPQNGPDPNSAPPLTPKP 262


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,008,481
Number of Sequences: 28460
Number of extensions: 89691
Number of successful extensions: 3263
Number of sequences better than 10.0: 384
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of query: 257
length of database: 4,897,600
effective HSP length: 88
effective length of query: 169
effective length of database: 2,393,120
effective search space: 404437280
effective search space used: 404437280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)


Medicago: description of AC149197.3