
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.3 - phase: 0
(257 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19871 39 9e-04
TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor k... 37 0.003
TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransfer... 36 0.006
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti... 36 0.006
BP033767 36 0.007
AV411591 34 0.022
TC12614 34 0.022
TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-... 33 0.037
TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, pa... 33 0.037
TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%) 33 0.037
AW720347 33 0.048
TC16697 33 0.063
TC10830 weakly similar to UP|Q94JL9 (Q94JL9) At1g68400/T2E12_5, ... 32 0.083
AV777934 32 0.083
TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete 32 0.11
AV409241 32 0.11
BP047567 32 0.11
AV409090 32 0.11
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 32 0.11
AV408480 32 0.14
>TC19871
Length = 528
Score = 38.9 bits (89), Expect = 9e-04
Identities = 15/24 (62%), Positives = 20/24 (82%)
Frame = +3
Query: 214 DGELSYMRAHFERVIGSKDSETYY 237
+GE+ YMRA +ERV+G KDSE +Y
Sbjct: 36 EGEIMYMRARYERVVGFKDSEAFY 107
>TC19569 similar to UP|AAR11301 (AAR11301) Lectin-like receptor kinase 1;1,
partial (16%)
Length = 486
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 7 SQTTTGQPPPSPT-TGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNS 54
SQ T P SPT T PPPSP V PPT P +S S++ S
Sbjct: 88 SQQPTHSPSTSPTSTTTPPPSPTKVTENPPTAPSTSTKSPTSSASEEPS 234
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 7 SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANS 48
S +TT QP SPT+ PSP+ +T PPT + P ++
Sbjct: 247 STSTTQQPKHSPTSPPASPSPSPPSTKPPTAMASPSTSPLSA 372
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/53 (37%), Positives = 24/53 (44%), Gaps = 2/53 (3%)
Frame = +1
Query: 7 SQTTTGQPPPSPT--TGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNK 57
S T+T PPPSPT T PP +P S +T PT P N + K
Sbjct: 118 SPTSTTTPPPSPTKVTENPPTAP-STSTKSPTSSASEEPSPPNPSTSTTQQPK 273
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/30 (36%), Positives = 16/30 (52%)
Frame = +1
Query: 5 HESQTTTGQPPPSPTTGQPPPSPASVNTCP 34
H + P PSP + +PP + AS +T P
Sbjct: 274 HSPTSPPASPSPSPPSTKPPTAMASPSTSP 363
>TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
partial (25%)
Length = 563
Score = 36.2 bits (82), Expect = 0.006
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 7 SQTTTGQPPPSPTTGQPPPSPASVNTCPPT 36
S TTT PPP P + PPPS S + PP+
Sbjct: 112 SSTTTPPPPPPPPSAPPPPSNPSPSNAPPS 201
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/58 (34%), Positives = 25/58 (42%), Gaps = 2/58 (3%)
Frame = +1
Query: 9 TTTGQPPP--SPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKFRS 64
T +PPP S TT PPP P PP+ P N P+ S ++ N G S
Sbjct: 82 TPISKPPPTTSSTTTPPPPPPPPSAPPPPSNPSPSNAPPS*SPTRPTKPNPQIGSSTS 255
>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
Length = 1294
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/65 (30%), Positives = 30/65 (45%)
Frame = +2
Query: 16 PSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKFRSMFRSFPIIVPS 75
P P++ PPP P+ N PPT P + P K ST++ K S +++PS
Sbjct: 215 PDPSSPPPPPPPSPPNANPPTTLTPPSSTPQTQKKTSPSTHQKSPKASS------LLLPS 376
Query: 76 CKMPT 80
P+
Sbjct: 377 TTAPS 391
>BP033767
Length = 541
Score = 35.8 bits (81), Expect = 0.007
Identities = 24/78 (30%), Positives = 34/78 (42%), Gaps = 8/78 (10%)
Frame = +3
Query: 10 TTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFGKF------- 62
T G PPS PPPSP + PP + P + P + + QN++ F +
Sbjct: 159 TQGSLPPSQPPNPPPPSP---SPSPPNPKYPFSSTPTTT-TTQNASTPFFPTYPSPPPPP 326
Query: 63 -RSMFRSFPIIVPSCKMP 79
S F SFP + S +P
Sbjct: 327 SPSSFASFPANISSLILP 380
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/64 (31%), Positives = 25/64 (38%), Gaps = 19/64 (29%)
Frame = +1
Query: 6 ESQTTTGQPPPSPTTGQ------------------PPPSPASVNTCPPTVRM-PINLQPA 46
++Q T PPP P + PPPSP S T PP+ + P N P
Sbjct: 226 QTQNTHFPPPPQPPPPKMPPHLSSPHTHLHHHLLLPPPSPPSPPTSPPSSSLKPPNPNPP 405
Query: 47 NSKS 50
S S
Sbjct: 406 TSSS 417
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 14 PPPSPTTGQPPPSPA--SVNTCPPTVRM 39
P PSP++ PP S A + T PPT R+
Sbjct: 439 PAPSPSSLSPPSSTADAAAKTTPPTRRL 522
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 4 LHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKS 50
LH PPSP T P S N PPT L P+ + S
Sbjct: 310 LHHHLLLPPPSPPSPPTSPPSSSLKPPNPNPPTSSSASPLPPSPAPS 450
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 16 PSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKLFG 60
PSP PPPSP+S + P + I Q SK S++KL G
Sbjct: 306 PSPP---PPPSPSSFASFPANISSLILPQ----TSKPKSSHKLLG 419
>AV411591
Length = 258
Score = 34.3 bits (77), Expect = 0.022
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 7 SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMP 40
S + + PPP PTT P PSP S++T + + P
Sbjct: 118 SPSASSSPPPGPTTPPPAPSPLSLSTVAVSSKSP 219
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Frame = +1
Query: 15 PPSPT-TGQPPPSPASVNTCPPTVRMPINLQPANSKSK 51
PPSP+ + PPP P T PP P++L SK
Sbjct: 112 PPSPSASSSPPPGP----TTPPPAPSPLSLSTVAVSSK 213
>TC12614
Length = 577
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/42 (42%), Positives = 21/42 (49%)
Frame = +2
Query: 9 TTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKS 50
TT+ P P+P+T P PS N PP R PI P S S
Sbjct: 206 TTSSSPSPNPSTNTPSPS----NLTPPPPRNPIPTSPTASTS 319
>TC13802 similar to UP|Q9M1T1 (Q9M1T1) Sugar-phosphate isomerase-like
protein, partial (41%)
Length = 522
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/49 (34%), Positives = 27/49 (54%)
Frame = +2
Query: 3 SLHESQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSK 51
S + ++TT+ P+ TT +P PSPA +T P + PA+S +K
Sbjct: 98 SSNPNKTTSTTSSPTSTTPKPSPSPAPSSTLRAPSSSPASASPASSPTK 244
>TC8786 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(33%)
Length = 594
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/51 (33%), Positives = 23/51 (44%)
Frame = +1
Query: 7 SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNK 57
S T PP P++ PPP+ ++ NTC +Q N K KQ K
Sbjct: 331 SPPATNVPPSLPSSTPPPPTSSTTNTCS-------QMQNQNQKQKQQKKRK 462
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +1
Query: 4 LHESQTTTGQPPPSPTTGQPPPS---PASVNTCPPTVRMP 40
L S T PPP T + PPS PA+ + PPT P
Sbjct: 91 LPSSATHANPPPPPSTAARTPPSSAPPATPKSTPPTSSPP 210
>TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)
Length = 759
Score = 33.5 bits (75), Expect = 0.037
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = +2
Query: 7 SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVR 38
++T PPPSPT PPP+ AS T T R
Sbjct: 215 TKTKNSPPPPSPTPKPPPPTRASTTTTATTWR 310
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/32 (43%), Positives = 16/32 (49%), Gaps = 4/32 (12%)
Frame = +2
Query: 9 TTTGQPPPSPTT----GQPPPSPASVNTCPPT 36
TTT P PSP+T PPP + PPT
Sbjct: 179 TTTAAPSPSPSTTKTKNSPPPPSPTPKPPPPT 274
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 14 PPPSPT--TGQPPPSPASV---NTCPPTVRMPINLQPANSKSKQNST 55
PPP PT T P PSP++ N+ PP P P + + +T
Sbjct: 161 PPPLPTTTTAAPSPSPSTTKTKNSPPPPSPTPKPPPPTRASTTTTAT 301
>AW720347
Length = 423
Score = 33.1 bits (74), Expect = 0.048
Identities = 24/64 (37%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Frame = +3
Query: 9 TTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKL----FGKFRS 64
TTT P SP++ PPPSP+S N P + P+ S+ NST+ + GK S
Sbjct: 99 TTTTSPTSSPSSA-PPPSPSSPNGAPAS--------PSPSRRSVNSTSLMSTPPAGKLLS 251
Query: 65 MFRS 68
RS
Sbjct: 252 PLRS 263
>TC16697
Length = 635
Score = 32.7 bits (73), Expect = 0.063
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 15 PPSPTTGQPPPSPASVN-TCPPTVRMPINLQPANSKSK 51
PPS ++ PPP+P+S + T P P +L PA+S S+
Sbjct: 494 PPSNSSQSPPPNPSSTDPTSPAPQPHPSHLSPASSSSQ 381
>TC10830 weakly similar to UP|Q94JL9 (Q94JL9) At1g68400/T2E12_5, partial
(24%)
Length = 702
Score = 32.3 bits (72), Expect = 0.083
Identities = 19/52 (36%), Positives = 26/52 (49%)
Frame = +3
Query: 7 SQTTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTNKL 58
S TT P SP+ + PPSPAS PT P +P + S+ +S + L
Sbjct: 474 SSPTTTSPVTSPS--RSPPSPASTALTSPTTASPARFRPP*TTSRGSSHSAL 623
>AV777934
Length = 265
Score = 32.3 bits (72), Expect = 0.083
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 3 SLHESQTTTGQPPPSPTTGQPPPSPAS 29
+L S TTTG P PSP+ PP + AS
Sbjct: 166 TLPPSHTTTGSPSPSPSASTPPSTSAS 246
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +1
Query: 4 LHESQTTTGQ----PPPSPT----TGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNST 55
LH SQT T PPP T T PPP +S T PP+ + P+ S S ST
Sbjct: 58 LHLSQTLTPPSAMAPPPPMTAITATSFPPPPDSSTKTLPPSHTTTGSPSPSPSASTPPST 237
Query: 56 N 56
+
Sbjct: 238 S 240
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 9 TTTGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNSTN 56
+T PP TTG P PSP++ + P+ S S NS N
Sbjct: 157 STKTLPPSHTTTGSPSPSPSA------------STPPSTSASNSNSEN 264
>TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete
Length = 1950
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 3 SLHESQTTTGQPPPSPTTGQPPPSPASVNT 32
SL + QT+ PP PT QPPP P S +
Sbjct: 66 SLAQPQTSLHS*PPQPTQPQPPPPPTSATS 155
>AV409241
Length = 282
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/45 (37%), Positives = 20/45 (43%)
Frame = +2
Query: 11 TGQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSKQNST 55
T PPP P T PPP+P+ PP P L S+ ST
Sbjct: 116 TPPPPPPPATVSPPPTPS-----PPAAATPSPLSAKPSRKIPTST 235
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Frame = +2
Query: 5 HESQTTTGQPP-------PSPTTGQPPPSPASVNTCPPTVRMPINLQPANSKSK 51
H QPP P P T PPP PA+V+ PPT P P+ +K
Sbjct: 50 HHQPHVQVQPPSHSPTKTPPPPTPPPPPPPATVSP-PPTPSPPAAATPSPLSAK 208
>BP047567
Length = 480
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Frame = +2
Query: 8 QTTTGQPPPSPTTGQPPPSP--------------ASVNTCPPTVRMPINLQPANSKSKQN 53
QTT P P+ PPSP S+ P ++P++ QP +
Sbjct: 119 QTTPPLPTSLPSPSPLPPSPRRRRPRLFPWLSSLPSLTPSSPATKIPLSCQPVRASEPLR 298
Query: 54 STNKLFGKFRS--MFRSFPIIVPSCKMPTMNGNH-----RTSETIIHGGIRI 98
S+ + S M + P +P+ ++P +G R T++ GIRI
Sbjct: 299 SSTGPASEVGSGRMVVTDPTGIPAARIPVRDGVRLGFLMRAGGTVVRLGIRI 454
>AV409090
Length = 436
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = +1
Query: 9 TTTGQPPPSPTTGQPPPSP-----ASVNTCPPT 36
T+ PP SPT P PSP A+ NT PPT
Sbjct: 307 TSPTSPPSSPTPWSPSPSPAPAPAAATNTTPPT 405
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/46 (45%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = +3
Query: 12 GQPPPSPTTGQPPPSPASVNTCPPTVRMPINLQPAN--SKSKQNST 55
G P PSPTTG PPS + + P P +L PA+ S S NST
Sbjct: 864 GPPAPSPTTGDTPPSASGPDVSPSGT--PSSL-PADTPSSSSNNST 992
>AV408480
Length = 262
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = +2
Query: 14 PPPSPTTGQPPPSPASVNTCPPTVRMPINLQPANS 48
PP S T+ PPP P S + PPT P N NS
Sbjct: 134 PPSSTTSPPPPPPPPSPSPQPPTRPAPQNGPDPNS 238
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 7 SQTTTGQPPPSPT--TGQPPPSPASVNTCPPTVRMPINLQP 45
S TT+ PPP P + QPP PA N P P+ +P
Sbjct: 140 SSTTSPPPPPPPPSPSPQPPTRPAPQNGPDPNSAPPLTPKP 262
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,008,481
Number of Sequences: 28460
Number of extensions: 89691
Number of successful extensions: 3263
Number of sequences better than 10.0: 384
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of query: 257
length of database: 4,897,600
effective HSP length: 88
effective length of query: 169
effective length of database: 2,393,120
effective search space: 404437280
effective search space used: 404437280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC149197.3