BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.11 - phase: 0
(190 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 33 0.024
TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%) 32 0.091
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 30 0.34
BP038960 29 0.45
BP036655 29 0.59
BP034538 28 0.77
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 28 0.77
TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial ... 28 0.77
BP063524 28 0.77
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 28 1.0
AV419126 28 1.0
AV779368 28 1.3
AV770718 28 1.3
TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-ric... 27 1.7
TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding prote... 27 1.7
TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (F... 27 1.7
BP041637 27 2.2
AV416122 27 2.2
TC18665 similar to UP|O23061 (O23061) BAC IG005I10, partial (65%) 27 2.9
TC16371 weakly similar to UP|P92169 (P92169) Serine repeat antig... 27 2.9
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 33.5 bits (75), Expect = 0.024
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 67 PEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
P+ ++ D E+ E +DD + D + DG E + D +DD EE E EE E+
Sbjct: 228 PKPVQTDNEEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEE--EGSEEVEVEG 401
Query: 127 LGGGWG 132
G G
Sbjct: 402 KDGAKG 419
>TC8606 similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (7%)
Length = 1008
Score = 31.6 bits (70), Expect = 0.091
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -2
Query: 63 AKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEET 122
A PE+ D ED + DDD E D + E +G E+DNE+ +E EE+
Sbjct: 458 AGAGPEENGEDEEDEDGEDQEDDDDDDEDDDEEDDGGEDEEEEGVEEEDNEDEEEDEEDE 279
Query: 123 E 123
E
Sbjct: 278 E 276
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 29.6 bits (65), Expect = 0.34
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 12/69 (17%)
Frame = +2
Query: 68 EDLEIDYEDWLKLQEADDDAP------------REVDAIRRYESDGLETDGDGEDDNEEV 115
ED + D ED ++ DDDAP E + G + D D +DD+++
Sbjct: 29 EDDDDDGEDDDGDEDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGGGDPDDDDDDDDDDD 208
Query: 116 KETEEETEI 124
+E EEE ++
Sbjct: 209 EEEEEEEDL 235
Score = 28.5 bits (62), Expect = 0.77
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 82 EADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIADLGGG 130
E DDD + D E D + G G+DD++E E EE GGG
Sbjct: 29 EDDDDDGEDDDGD---EDDDDDAPGGGDDDDDEEDEEEEGGVEGGRGGG 166
>BP038960
Length = 524
Score = 29.3 bits (64), Expect = 0.45
Identities = 18/48 (37%), Positives = 24/48 (49%)
Frame = +3
Query: 79 KLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIAD 126
+LQ+ + + PR D E D +DD EE +E EEE E AD
Sbjct: 267 QLQKGEAEQPRV--------EDSEEEAADYDDDEEEEEEEEEEDEHAD 386
>BP036655
Length = 556
Score = 28.9 bits (63), Expect = 0.59
Identities = 15/44 (34%), Positives = 22/44 (49%), Gaps = 2/44 (4%)
Frame = -3
Query: 82 EADDD--APREVDAIRRYESDGLETDGDGEDDNEEVKETEEETE 123
+ DDD E + + + D D + +D+ EE ETE ETE
Sbjct: 389 DGDDDEVVDEEEEVVEEWSDDDDINDDESDDEVEEESETEIETE 258
>BP034538
Length = 392
Score = 28.5 bits (62), Expect = 0.77
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 60 EQQAKRNPEDLE-IDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGE 109
+ + +R EDL D E+ + E D A E D+ R+ ESDG +GD E
Sbjct: 336 DPEGERGGEDLGGEDTENGREEAEEDGSAGFEEDSRRQTESDGESVEGDEE 184
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 28.5 bits (62), Expect = 0.77
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = -2
Query: 103 ETDGDGEDDNEEVKETEEETEIADLGGGWGRIVFMPIRRGKQVTMN 148
E D DGE + EE +E EEE E ++ G G + + +G + ++N
Sbjct: 696 EFDEDGEGEEEEEEEEEEEGEKVEVEVGVGEELLI---KGSRTSIN 568
Score = 28.1 bits (61), Expect = 1.0
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = -2
Query: 100 DGLETDGDGEDDNEEVKETEEETEIADLGGG 130
D + DG+GE++ EE +E E E ++G G
Sbjct: 699 DEFDEDGEGEEEEEEEEEEEGEKVEVEVGVG 607
>TC18517 weakly similar to UP|AAQ82688 (AAQ82688) Epa4p, partial (4%)
Length = 493
Score = 28.5 bits (62), Expect = 0.77
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 82 EADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEE 121
E +++ P E D + DG+ +GD ED+ E+ EE
Sbjct: 378 EEEEEEPGEEDGEEDDDGDGVPDEGDEEDEEEDHGVVAEE 259
>BP063524
Length = 523
Score = 28.5 bits (62), Expect = 0.77
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 82 EADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEE 120
E D DAP + IR +E G+E D EDD EV+ +
Sbjct: 251 EEDVDAPLQSGIIRVFEQPGIEAPSD-EDDFIEVRSKRQ 364
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 28.1 bits (61), Expect = 1.0
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 79 KLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIADLGGGWG 132
K Q +DDAP V+ ++ + D + D D +DD+E +++ E LGG G
Sbjct: 186 KPQPQEDDAP-IVEDVKDDDKDEADDDEDEDDDDE-----DDDKEDGALGGSEG 329
>AV419126
Length = 230
Score = 28.1 bits (61), Expect = 1.0
Identities = 18/65 (27%), Positives = 34/65 (51%), Gaps = 3/65 (4%)
Frame = -2
Query: 59 KEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRR---YESDGLETDGDGEDDNEEV 115
K + + ED E ++++ + E DD + A+ E D + +G+GE++ EEV
Sbjct: 202 KREDGECEDEDDEEEHDEEEEDTERDDGTLQPALAVGAGLLAEPDAGDENGNGEEECEEV 23
Query: 116 KETEE 120
+E +E
Sbjct: 22 QEADE 8
>AV779368
Length = 200
Score = 27.7 bits (60), Expect = 1.3
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = +1
Query: 20 YMNPNVIYLKHNVILIFVSSLIPLTREPW 48
Y N +++Y+K N + +FVS L + E W
Sbjct: 70 YFNLSLVYVKGNRVTVFVSGLK*MKTETW 156
>AV770718
Length = 547
Score = 27.7 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 99 SDGLETDGDGEDDNEEVKETEEETE 123
SD DG+ ED NEE+ ++E ++E
Sbjct: 38 SDDTMVDGETEDRNEEMSQSESDSE 112
>TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein,
partial (30%)
Length = 539
Score = 27.3 bits (59), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 78 LKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKETEEETE 123
L+L+E + E + E D + E+D EE +E E ETE
Sbjct: 280 LRLREPPREGEEEEEEKDLERESERERDDEREEDGEEEREEEPETE 143
>TC18764 similar to UP|Q8LBJ5 (Q8LBJ5) Nucleic acid binding protein-like,
partial (35%)
Length = 848
Score = 27.3 bits (59), Expect = 1.7
Identities = 11/21 (52%), Positives = 16/21 (75%)
Frame = +1
Query: 103 ETDGDGEDDNEEVKETEEETE 123
E +G+GED++EE E E+E E
Sbjct: 178 EDEGEGEDEDEEGLEEEDEEE 240
>TC9140 homologue to UP|TBB3_PEA (P29502) Tubulin beta-3 chain (Fragment),
partial (34%)
Length = 797
Score = 27.3 bits (59), Expect = 1.7
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +2
Query: 76 DWLKLQEADDDAPREVDAIRRYESDGLETDGDGEDDNEEVKE 117
D ++ EA+ + V ++Y+ E DG+ ED+ EE +E
Sbjct: 329 DEMEFTEAESNMNDLVSEYQQYQDATAEDDGEYEDEEEEEQE 454
>BP041637
Length = 457
Score = 26.9 bits (58), Expect = 2.2
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = -3
Query: 100 DGLETDGDGEDDNEEVKETEEE 121
DG+ DGDGE++ E+VK EE+
Sbjct: 431 DGI--DGDGEEEREKVKVNEEK 372
>AV416122
Length = 414
Score = 26.9 bits (58), Expect = 2.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 83 ADDDA---PREVDAIRRYESDGLETDGDGEDDNEEVKETEEETE 123
A DD P+E + ++ +G+ E+D+EE KE E+E E
Sbjct: 222 ATDDCSSQPKEAANDDNEPDNDVQFEGEEEEDDEEDKEEEDEEE 353
>TC18665 similar to UP|O23061 (O23061) BAC IG005I10, partial (65%)
Length = 451
Score = 26.6 bits (57), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = -2
Query: 90 EVDAIRRYESDGLETDGDGEDDNEEVKETEEETEIA 125
E D +SDG + G+DD E +E +E TE A
Sbjct: 204 EGDEDEDLDSDGFRDEEIGDDDEGEGEEEDEATEEA 97
>TC16371 weakly similar to UP|P92169 (P92169) Serine repeat antigen
(Fragment), partial (13%)
Length = 500
Score = 26.6 bits (57), Expect = 2.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 59 KEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETDGDGED 110
++ +A + D ++ + +L+EADDD+ V+ + ES D D
Sbjct: 69 EDVEASEDDNDHRVEENEEEELEEADDDSDGMVNGVINEESSDSAMSDDSSD 224
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,066,573
Number of Sequences: 28460
Number of extensions: 36072
Number of successful extensions: 361
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of query: 190
length of database: 4,897,600
effective HSP length: 85
effective length of query: 105
effective length of database: 2,478,500
effective search space: 260242500
effective search space used: 260242500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC149197.11