BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.1 + phase: 0 /pseudo
(610 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP063694 70 1e-12
AV427921 64 9e-11
AV766088 60 1e-09
BP033602 51 6e-07
AU088980 50 1e-06
AV769206 37 0.012
BP058111 33 0.13
BP052632 32 0.23
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 32 0.39
AV764934 30 0.86
BP041939 30 0.86
TC14171 homologue to UP|RL10_EUPES (Q9M5M7) 60S ribosomal protei... 30 1.5
TC14173 homologue to UP|RL10_SOLME (P93847) 60S ribosomal protei... 30 1.5
TC10612 homologue to UP|RL10_VITRI (Q9SPB3) 60S ribosomal protei... 30 1.5
TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial ... 30 1.5
TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete 29 1.9
AV779915 29 2.5
BP061842 29 2.5
TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial... 28 4.3
BP063693 27 9.5
>BP063694
Length = 511
Score = 70.1 bits (170), Expect = 1e-12
Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Frame = -2
Query: 291 LYVL----QGIVVTGSAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGI-D 345
LYVL Q ++ T SS +P+ +LWH LGH+ + L K G L I
Sbjct: 432 LYVLNQDSQALLTT-----SSPLPRASF-ELWHSRLGHVNFDIIKQLHKHGCLDVSSILP 271
Query: 346 KLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPR 405
K C K K++ F R +LD IH DL GPS V S G Y + +DDF R
Sbjct: 270 KPICCTSCQMAKSKRLVFHDNNKRASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFSR 91
Query: 406 KVWVYFLRYKNETFPTFKKWRILVETQ 432
W Y L+ K++ ++++ +E +
Sbjct: 90 FTWFYPLKRKSDFSDVLLRFKVFMENR 10
>AV427921
Length = 284
Score = 63.5 bits (153), Expect = 9e-11
Identities = 38/95 (40%), Positives = 51/95 (53%)
Frame = +1
Query: 464 RHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSA 523
R T PQQNGV+ER RT+L R +L+ +GL + EA + H++NRSP
Sbjct: 1 RQ*TAAYTPQQNGVSERKNRTILNMVRSLLTMSGLP--KSFLPEAVMWSLHILNRSPTLV 174
Query: 524 LDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGK 558
+ +PE+ WSG + RI C AYA V D K
Sbjct: 175 VQNMMPEEAWSGRQPAVDHFRISRCLAYAHVPDQK 279
>AV766088
Length = 501
Score = 59.7 bits (143), Expect = 1e-09
Identities = 34/116 (29%), Positives = 57/116 (48%), Gaps = 1/116 (0%)
Frame = -3
Query: 305 VSSSMPKKDVTK-LWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSF 363
V+ S P + + LWH LGH + + L + + ++ C+ VF K ++ F
Sbjct: 346 VTLSFPFAGIAQSLWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPF 167
Query: 364 STATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
++ + T D +HSDLW S V S G R+ + +DDF +W + L K++ F
Sbjct: 166 VSSNNVTVMPFDILHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQVF 2
>BP033602
Length = 533
Score = 50.8 bits (120), Expect = 6e-07
Identities = 29/91 (31%), Positives = 44/91 (47%)
Frame = +3
Query: 312 KDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTK 371
+D LWH LGH + + L LE C+ V K ++ + + +
Sbjct: 261 RDQIMLWHNRLGHPNFQYLRHLFPD-LFKNVNCSSLE-CESCVLAKNQRAPYYSQPYHAS 434
Query: 372 GILDYIHSDLWGPSKVTSYGGRRYMMTIIDD 402
IHSD+WGPSK+T+ G+R+ +T IDD
Sbjct: 435 RPFYLIHSDVWGPSKITTQFGKRWFVTFIDD 527
>AU088980
Length = 360
Score = 50.1 bits (118), Expect = 1e-06
Identities = 31/107 (28%), Positives = 53/107 (48%), Gaps = 3/107 (2%)
Frame = +2
Query: 475 NGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWS 534
N + ER R +L R ++ ++ L ++LW A A +L+N P L + P +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLP--KNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLN 175
Query: 535 GNLVDYSNLRIFGCPAYALV---NDGKLAPRAVECIFLSYASESKGY 578
+ +L++FG Y+ N KL PRA +C+FL + + + GY
Sbjct: 176 NDSPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGY 316
>AV769206
Length = 536
Score = 36.6 bits (83), Expect = 0.012
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = -3
Query: 555 NDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNE 600
N KL+ + EC+F+ Y+ KGY+ C D +S ++ +S+DV F+E
Sbjct: 519 NSTKLSLHSKECVFIGYSINHKGYK--CLD-QSGRIYISKDVLFHE 391
>BP058111
Length = 570
Score = 33.1 bits (74), Expect = 0.13
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 317 LWHMHLGHMTEKGMHLLSKQGRL--GKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGIL 374
LWH+ LGH + K + +L K K+ + C KQKK+SF + + I
Sbjct: 186 LWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCH---MAKQKKLSFPNSVTLSSEIF 16
Query: 375 DYIHS 379
D IH+
Sbjct: 15 DLIHT 1
>BP052632
Length = 489
Score = 32.3 bits (72), Expect = 0.23
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = -3
Query: 527 KVPEDIWSGNLVDYSNLRIFGCPAYAL-VND--GKLAPRAVECIFLSYASESKGYRLWCS 583
K P ++W G S FGC + L ND GK + + I L Y+S SK Y ++ S
Sbjct: 487 KTPYELWRGRRPTVSYFHPFGCK*FILNTNDNIGKFDNKFDKRILLGYSSNSKAYIVFNS 308
Query: 584 DPKSQKLILSRDVTFNE 600
++Q + S +V F++
Sbjct: 307 --RTQVVEESINVKFDD 263
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 31.6 bits (70), Expect = 0.39
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = +2
Query: 443 DN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*R 502
+N ++F S +FC GI + ++PQ NG E + +L+ + L A
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEA-----E 172
Query: 503 DLWVEAASTACHLVNRSPHSAL 524
W++ N P S++
Sbjct: 173 GRWIDELPIVLWSYNTMPQSSI 238
>AV764934
Length = 406
Score = 30.4 bits (67), Expect = 0.86
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 318 WHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKV--SFSTATHRTKGILD 375
WH LGH + + + D +EF K ++ ST T+ +
Sbjct: 213 WHSRLGHPHLDNLKRVLSSCNVSYSPKDTVEFRTACCLGKAHRLPSQMSTTTYLP---FE 43
Query: 376 YIHSDLWGPSKVTS 389
I+SDLWGP+ V S
Sbjct: 42 LIYSDLWGPAPVCS 1
>BP041939
Length = 392
Score = 30.4 bits (67), Expect = 0.86
Identities = 11/23 (47%), Positives = 18/23 (77%)
Frame = +1
Query: 558 KLAPRAVECIFLSYASESKGYRL 580
KL P++++C+FL Y+ KGYR+
Sbjct: 40 KLDPKSLKCVFLGYSRT*KGYRV 108
>TC14171 homologue to UP|RL10_EUPES (Q9M5M7) 60S ribosomal protein L10,
partial (78%)
Length = 716
Score = 29.6 bits (65), Expect = 1.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 341 KQGIDKLEFCKHYVFWKQKKVS 362
K+G+D+ FC H V W+++ VS
Sbjct: 169 KKGVDEFPFCVHLVSWEKENVS 234
>TC14173 homologue to UP|RL10_SOLME (P93847) 60S ribosomal protein L10
(EQM), partial (90%)
Length = 611
Score = 29.6 bits (65), Expect = 1.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 341 KQGIDKLEFCKHYVFWKQKKVS 362
K+G+D+ FC H V W+++ VS
Sbjct: 137 KKGVDEFPFCVHLVSWEKENVS 202
>TC10612 homologue to UP|RL10_VITRI (Q9SPB3) 60S ribosomal protein L10 (QM
protein homolog), partial (68%)
Length = 474
Score = 29.6 bits (65), Expect = 1.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 341 KQGIDKLEFCKHYVFWKQKKVS 362
K+G+D+ FC H V W+++ VS
Sbjct: 143 KKGVDEFPFCVHLVSWEKENVS 208
>TC8445 similar to UP|O80910 (O80910) At2g38410 protein, partial (7%)
Length = 841
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -2
Query: 27 WLKVLLFNLILMNLTLSFWIWKILMLKLMMKIRLFCWLSLYL 68
WL++L N++ + L L W+ L +++M+++ L WL L L
Sbjct: 156 WLRLL--NVLGLGLRL*LWLGVRLKMRMMLRLML*MWLGLIL 37
>TC8557 similar to UP|Q9LK52 (Q9LK52) Dbj|BAA90629.1, complete
Length = 1064
Score = 29.3 bits (64), Expect = 1.9
Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Frame = +1
Query: 26 EWLKVLLFNLILMN--LTLSFWIWKILMLKLMMKIRL-FCWLSL 66
E LK +L + +LM L L + K +M+ MM++ L CWLSL
Sbjct: 442 EMLKTILLHEVLMQMILMLKSKVMKRVMMMTMMRMTLKLCWLSL 573
>AV779915
Length = 534
Score = 28.9 bits (63), Expect = 2.5
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 29 KVLLFNLILMNLTLSFWIWKILMLKLMMKIRLFCWL 64
KV ++L +M + LS ++ +I +L LM K+RLF WL
Sbjct: 123 KVGTWHLQMMRMRLSRYLCRITIL-LMTKMRLFLWL 227
>BP061842
Length = 318
Score = 28.9 bits (63), Expect = 2.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 374 LDYIHSDLWGPSKVTSYGGRRYMMTIID 401
L+ + DLWGP+ S G +Y ++ +D
Sbjct: 88 LELVPCDLWGPAPCVSTNGFKYYLSFVD 5
>TC10416 weakly similar to UP|O04108 (O04108) MYB factor, partial (41%)
Length = 1046
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +3
Query: 38 MNLTLSFWIWKILMLKLMMKIR----LFCWLSLYLLPTNISKKSCCMEIMIPYPLKMLN 92
+ +TL FW+ ++ ++ MKI WL+ PTN K+SC + +++ + +K ++
Sbjct: 663 LKMTLIFWM---ILQRMSMKISGQT*NHIWLTF---PTNQMKQSCKLRLIVLFKIKTIS 821
>BP063693
Length = 525
Score = 26.9 bits (58), Expect = 9.5
Identities = 22/74 (29%), Positives = 39/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 30 VLLFNLILMNLTLSFWIWKILMLKLMMKIRLFCWLSLYLLPTNISKK-SCC-MEIMIPYP 87
++ LI++++TL + +L L L+++ R F SL PT + SCC + + +
Sbjct: 60 LITVTLIVLSVTLXY----VLXLLLLVRSR-FLQTSLSFSPTTTTPSLSCC*ISTFLLFS 224
Query: 88 LKMLNLICCPKKVF 101
L ++ L CC VF
Sbjct: 225 LLIVLLACCCCIVF 266
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.331 0.144 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,712,766
Number of Sequences: 28460
Number of extensions: 175345
Number of successful extensions: 1167
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of query: 610
length of database: 4,897,600
effective HSP length: 96
effective length of query: 514
effective length of database: 2,165,440
effective search space: 1113036160
effective search space used: 1113036160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC149197.1