BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149134.10 + phase: 0
(478 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV428778 160 4e-40
AV412245 152 2e-37
TC16497 104 3e-23
TC8707 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, parti... 99 2e-21
TC16620 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, part... 86 2e-17
TC11505 similar to GB|AAM91406.1|22137122|AY133576 At4g30940/F6I... 74 7e-14
AV410210 29 1.9
TC13931 weakly similar to UP|BAC25162 (BAC25162) Adult male test... 28 4.3
BP057647 27 5.6
AW720329 27 7.3
AV423314 27 9.6
>AV428778
Length = 323
Score = 160 bits (405), Expect = 4e-40
Identities = 82/93 (88%), Positives = 82/93 (88%)
Frame = +1
Query: 17 DRIKLNVGGKLFETTLSTIRSGGPDSLLFALSNRFSNDPNPVFIDRDPEIFSVFLSLLRT 76
DRIKLNVGGKLFETTLSTIRSGGPDSLLF LSNR S DPNPVFIDRDPEI SVFL LLRT
Sbjct: 43 DRIKLNVGGKLFETTLSTIRSGGPDSLLFDLSNRDSTDPNPVFIDRDPEILSVFLCLLRT 222
Query: 77 NHLPSTARRFSKQELADEALFYGIDSHLRNATS 109
NHLP T RFSKQELADEA FY ID HLRNATS
Sbjct: 223 NHLPCTDSRFSKQELADEAQFYSIDYHLRNATS 321
>AV412245
Length = 243
Score = 152 bits (383), Expect = 2e-37
Identities = 72/81 (88%), Positives = 76/81 (92%)
Frame = +1
Query: 86 FSKQELADEALFYGIDSHLRNATSPPPFSGIDASIVASVRPASEGLSSTFTAAENGSVWI 145
FSKQELADEA FYGIDSHLRNATSPPPFSG DASIV S+RPASEGL S F+AA+NGSVWI
Sbjct: 1 FSKQELADEAQFYGIDSHLRNATSPPPFSGFDASIVGSIRPASEGLVSAFSAADNGSVWI 180
Query: 146 AHGGQLSSYDWNLIHSATVRT 166
AHGGQLSSYDWNLIHSAT+RT
Sbjct: 181 AHGGQLSSYDWNLIHSATIRT 243
>TC16497
Length = 436
Score = 104 bits (260), Expect = 3e-23
Identities = 54/80 (67%), Positives = 60/80 (74%)
Frame = +3
Query: 399 GELEVWSRVKEVVECESERDRESDGEGVYRRNFVDKREDSEKGVIVKIEGGGDRLFISRE 458
GELEVWSR++E + EG YRRNFVDKR DSE+GVI KIEGGGDRLF+SRE
Sbjct: 3 GELEVWSRLREA--------GSENAEGFYRRNFVDKRGDSERGVIKKIEGGGDRLFVSRE 158
Query: 459 DVEGIEVWESSHYAGAISVL 478
VEGIEVWESSH +ISVL
Sbjct: 159 GVEGIEVWESSHSVKSISVL 218
>TC8707 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, partial (43%)
Length = 1062
Score = 98.6 bits (244), Expect = 2e-21
Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 5/254 (1%)
Frame = +1
Query: 221 VNAITASDNSVFASFDCPHRE-NCILEVDKAKLQIVSQLGRQS--GNQAKNMVPG-KLTF 276
V AI +S +F SF+ R N I+ D L +++ G + +P KL +
Sbjct: 4 VQAIGSSPEQMFVSFESGRRNSNSIVVYDLHTLTPATEISHNEIFGADIDSAIPATKLQW 183
Query: 277 VPTTGVLVGSAVTGGAFGYSGYIRVWDPRSGEVVWETNEPGAGRSSRFGDSFSAIDVDVE 336
V +L+ + G G SG +R+WD RSG VVWE E D F+ + V
Sbjct: 184 VSEHNLLMAAGSHSGPSGVSGNVRLWDVRSGNVVWEMAEK--------VDCFADVTVSDS 339
Query: 337 KLLLFKLCSKSGDLAMADMRRL-GDDPWVYLKEKNPSLWTDGGDGSTSSVVNCYKGQVFV 395
+FK+ SG+ D+R L ++ WV L +K + +G + QVF
Sbjct: 340 LSAIFKVGVNSGEAFYFDLRNLSAENSWVCLGDKRKVM--NGKKEGFGCKIETQGNQVFC 513
Query: 396 GRGGELEVWSRVKEVVECESERDRESDGEGVYRRNFVDKREDSEKGVIVKIEGGGDRLFI 455
+GG++E+WS EV+ E E ++++N + + +D I + GG R+F+
Sbjct: 514 SKGGDVELWS---EVLMGNKGGRLE---ERIFKKNLMGRVKDMGGAKITNVAFGGSRMFL 675
Query: 456 SREDVEGIEVWESS 469
+R+D + +EVW+SS
Sbjct: 676 TRKDQQCVEVWQSS 717
>TC16620 weakly similar to UP|Q9FN67 (Q9FN67) Gb|AAD56319.1, partial (17%)
Length = 518
Score = 85.5 bits (210), Expect = 2e-17
Identities = 56/145 (38%), Positives = 83/145 (56%), Gaps = 4/145 (2%)
Frame = +2
Query: 8 QTTTDSNVTDRIKLNVGGKLFETTLSTIRSGGPDSLLFALSNRFSNDPNPVFIDRDPEIF 67
Q D+N+ + ++VGG++F+TT T+ S GP S ++ S P F+DRDPEIF
Sbjct: 104 QPKPDTNI---VTIDVGGQVFQTTKQTLTSAGPKSFFSRIAEA-SPFCTP-FVDRDPEIF 268
Query: 68 SVFLSLLRTNHLPSTARRFSKQELADEALFYGIDSHLRNATSPP----PFSGIDASIVAS 123
S+ LSLLRT +LPS A+ F Q+L E+ FYGI++ L N+ S P PF+ + S++
Sbjct: 269 SLLLSLLRTGNLPSKAKSFDLQDLIIESQFYGIENLLINSLSSPSQFEPFN-LHKSVLLP 445
Query: 124 VRPASEGLSSTFTAAENGSVWIAHG 148
+ S GS+ +AHG
Sbjct: 446 LN--GRDSPSAVATTPYGSIHVAHG 514
>TC11505 similar to GB|AAM91406.1|22137122|AY133576 At4g30940/F6I18_150
{Arabidopsis thaliana;}, partial (31%)
Length = 544
Score = 73.6 bits (179), Expect = 7e-14
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +3
Query: 17 DRIKLNVGGKLFETTLSTIRSGGPDSLLFALSNR----FSNDPNPVFIDRDPEIFSVFLS 72
DR+K NVGG++ ETT +T+ + G +S+ A+ + ++ + FIDR+P+ F+V L
Sbjct: 123 DRVKFNVGGRVLETTATTLANAGRNSMFGAMLDENWDLLPDNGSVKFIDRNPDCFAVLLD 302
Query: 73 LLRTNHLPSTARRFSKQELADEALFYGIDSHLRNATSPPPFSGIDASIVASVRPASEGLS 132
LLRT L ++ L EAL+YG+ H+R A F G + SV+ + G
Sbjct: 303 LLRTGEL-YIPPNLPEKLLYREALYYGVLDHVRTA-KWGQFDGNRLRLSRSVQGQAPGDG 476
Query: 133 STFTAAENGSVWIAHGGQLSSY 154
+ A +G +AHG + Y
Sbjct: 477 TAIRAGPDGGCCVAHGSMVHVY 542
>AV410210
Length = 317
Score = 28.9 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 118 ASIVASVRPASEGLSSTFTAAENGSVWIAHG 148
AS+ P+S SS+F ++ N WI HG
Sbjct: 33 ASMAICSSPSSSSSSSSFDSSNNTKAWIVHG 125
>TC13931 weakly similar to UP|BAC25162 (BAC25162) Adult male testis cDNA,
RIKEN full-length enriched library, clone:1700094L18
product:protamine 1, full insert sequence, partial (47%)
Length = 392
Score = 27.7 bits (60), Expect = 4.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 166 THLDEINSICRVWPEIAAVGTESDAGLHFYNFSGSRHVGSVH 207
+HL I ++ +A+ GT D +H YN S + +GS+H
Sbjct: 177 SHLSVIKTLAVCGSVVASGGT--DDTIHLYNLSNASSLGSLH 296
>BP057647
Length = 567
Score = 27.3 bits (59), Expect = 5.6
Identities = 22/77 (28%), Positives = 35/77 (44%)
Frame = -3
Query: 317 GAGRSSRFGDSFSAIDVDVEKLLLFKLCSKSGDLAMADMRRLGDDPWVYLKEKNPSLWTD 376
G+GR SR G+S A + KSG + + + K ++ S W++
Sbjct: 268 GSGRGSRPGESSPATSRE----------KKSGAAESGEAQWTVEREISLRKTESGSWWSE 119
Query: 377 GGDGSTSSVVNCYKGQV 393
GGD ST++V G+V
Sbjct: 118 GGDLSTAAVEEESGGRV 68
>AW720329
Length = 541
Score = 26.9 bits (58), Expect = 7.3
Identities = 20/58 (34%), Positives = 29/58 (49%)
Frame = +1
Query: 412 ECESERDRESDGEGVYRRNFVDKREDSEKGVIVKIEGGGDRLFISREDVEGIEVWESS 469
+ +S R+R GV RR F R +SE V+ ++ +R E + G VWESS
Sbjct: 346 DSKSTRNRNRLRVGVKRRRF---RPESEGRVVGALQARENRARGGVELMGGYPVWESS 510
>AV423314
Length = 498
Score = 26.6 bits (57), Expect = 9.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 300 RVWDPRSGEVVWETNEPGAGRSSRFGD 326
R+W +G ++W+T P G +F D
Sbjct: 239 RMWTKYTGVLIWKTQNPWTGLRGQFYD 319
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,303,058
Number of Sequences: 28460
Number of extensions: 117262
Number of successful extensions: 576
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of query: 478
length of database: 4,897,600
effective HSP length: 94
effective length of query: 384
effective length of database: 2,222,360
effective search space: 853386240
effective search space used: 853386240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC149134.10