BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149131.10 - phase: 0 /pseudo
(188 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11299 100 2e-22
BI418251 75 7e-15
AV780048 59 7e-10
TC12546 weakly similar to UP|Q9FJ30 (Q9FJ30) Similarity to heat ... 58 1e-09
TC17934 similar to PIR|T06667|T06667 argininosuccinate synthase ... 49 7e-07
BP063614 48 9e-07
BI420296 47 3e-06
BP071245 41 1e-04
TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, part... 36 0.005
AV419392 33 0.040
AU251749 32 0.052
TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (... 30 0.20
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo... 30 0.20
BE122502 30 0.26
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 29 0.44
BP076980 28 0.75
BI419994 28 1.3
TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete 27 1.7
AV413010 27 2.2
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {... 27 2.2
>TC11299
Length = 498
Score = 100 bits (249), Expect = 2e-22
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 27/153 (17%)
Frame = +1
Query: 11 ATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTD 70
A PP VD+I++LPDEI+ ILS +P E A AT++LSKRWTHLW+ +DF+ + + + D
Sbjct: 67 AFPPMVDRISALPDEIICHILSFLPTENAVATAVLSKRWTHLWRSVSALDFSSVRMYEPD 246
Query: 71 S-TYSFNDSMSSILLSR-----------------------YHNINKWINFVVQ---HGLK 103
+ F+D + S+LL R NI+KW+NFV Q G++
Sbjct: 247 DHRFFFSDIVYSVLLFRNAATPIKKFSLELDDDVAVANLDIANIHKWVNFVTQCRVGGIE 426
Query: 104 YLRLGLHISVEDDDDDAYVDIPILPVSILTCRT 136
+LRL ++ +P LP+SIL+C+T
Sbjct: 427 HLRLHFM---------DFIQLPQLPISILSCKT 498
>BI418251
Length = 546
Score = 75.1 bits (183), Expect = 7e-15
Identities = 51/151 (33%), Positives = 73/151 (47%), Gaps = 22/151 (14%)
Frame = +1
Query: 14 PAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTD---IILNDTD 70
P D+I+ LPDE+L QILS +P E+A ATS+L KRW+ LW +DF D +
Sbjct: 28 PMADRISKLPDEVLCQILSFLPTEDAVATSVLCKRWSSLWLSVPTLDFDDYRYLKGKKLK 207
Query: 71 STYSFNDSMSSILLSR-------------------YHNINKWINFVVQHGLKYLRLGLHI 111
SF + + +I+LSR Y ++ W+N +Q ++ L + L +
Sbjct: 208 LQSSFINFVYAIILSRALHQPIKNFTLSVISEECPYPDVKVWLNAAMQRQVENLDICLSL 387
Query: 112 SVEDDDDDAYVDIPILPVSILTCRTLVSLDL 142
S LP SIL+C TLV L L
Sbjct: 388 ST-------------LPCSILSCTTLVVLKL 441
>AV780048
Length = 501
Score = 58.5 bits (140), Expect = 7e-10
Identities = 31/74 (41%), Positives = 44/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYS-F 75
D+ +SLPD IL ILSL+ +EA TSILSKRW LW+ +DF D D Y+
Sbjct: 251 DRFSSLPDPILCHILSLLTTKEAVTTSILSKRWIPLWRSVPTLDFDDSNWYGGDEVYARL 430
Query: 76 NDSMSSILLSRYHN 89
+++ ++L+R N
Sbjct: 431 VEAVYKVILARDFN 472
>TC12546 weakly similar to UP|Q9FJ30 (Q9FJ30) Similarity to heat shock
transcription factor HSF30, partial (9%)
Length = 755
Score = 57.8 bits (138), Expect = 1e-09
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 40/166 (24%)
Frame = +2
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWK------FTDCIDFTDI------ 64
D I++LPD +L ILS + +EA ATS+LS+RW LW+ F D TDI
Sbjct: 149 DGISTLPDALLCHILSFLTSKEAVATSVLSRRWIPLWRSVPTLHFKDANYHTDIGHADHD 328
Query: 65 ILNDTDSTYSFNDSMSSILLSRYH----------------------NINKWINFVVQHGL 102
I+ D S + S+ +++LSR N++ W+N VVQ L
Sbjct: 329 IVKDVRSRHV--QSVYAVILSRDFQLPIKKFYLRLNDVCQPFYDPANVSVWVNAVVQRQL 502
Query: 103 KYLRLGLHISVEDDDDDAYVDIPILPV------SILTCRTLVSLDL 142
++L D + P+L SI +CRTLV L L
Sbjct: 503 EHL-------------DISLPYPMLSTPRANLSSIFSCRTLVVLKL 601
>TC17934 similar to PIR|T06667|T06667 argininosuccinate synthase -
Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (11%)
Length = 564
Score = 48.5 bits (114), Expect = 7e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -1
Query: 19 INSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKF 55
IN LPD I ILS +P+ EAA TSILS++W ++W F
Sbjct: 564 INQLPDGIPGAILSKLPINEAAKTSILSRKWRYMWTF 454
>BP063614
Length = 508
Score = 48.1 bits (113), Expect = 9e-07
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Frame = +2
Query: 2 RRRRRISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDF 61
R R+ ++E D+++ LPD IL ILS + + A T ILS RW LWK +
Sbjct: 122 RGRQSLNENENEDNKDRLSDLPDCILLHILSFVKAKAAVQTCILSTRWKDLWKRLPSL-- 295
Query: 62 TDIILNDTDSTY-SFNDSMSSILLSR------------------YHNINKWINFVVQHGL 102
I+L+ TY SF +S +L R H + + + + V H +
Sbjct: 296 --ILLSSNFWTYKSFTKFVSRLLTLRDGSTALHGLDFEHDGHIQPHLLKRIVKYAVSHNV 469
Query: 103 KYLRLGLHISVE 114
+ L L + ++E
Sbjct: 470 QRLGLSVTCAIE 505
>BI420296
Length = 592
Score = 46.6 bits (109), Expect = 3e-06
Identities = 38/147 (25%), Positives = 67/147 (44%), Gaps = 21/147 (14%)
Frame = +2
Query: 17 DKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTD--STYS 74
D+++ LPD +L +L + ++A T +LS RW LWK T + LN +D +
Sbjct: 194 DRLSDLPDLVLLHVLKFMSTKQAVQTCVLSTRWKDLWK-----GVTTLALNSSDFATAPR 358
Query: 75 FNDSMSSILLSR-----YHN-------------INKWINFVVQHGLKYLRLGLHISVEDD 116
F++ +S +L R HN +N+ +++ V H ++ L + ++
Sbjct: 359 FSEFLSCVLSHRNDSVSLHNLDLRRKGCVEPELLNRVMSYAVSHDVQSLTIEFNL----- 523
Query: 117 DDDAYVDIPI-LPVSILTCRTLVSLDL 142
Y+ + L I +CRTL L L
Sbjct: 524 ----YLKLGFKLHPCIFSCRTLTYLKL 592
>BP071245
Length = 552
Score = 41.2 bits (95), Expect = 1e-04
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +1
Query: 2 RRRRRISEAATPPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWK 54
R R SE+ D+++ LPD +L ILS + + A T LS RW LWK
Sbjct: 337 RGRESESESENEENKDRLSDLPDCVLLHILSFVNAKYAVQTCTLSTRWKDLWK 495
>TC17551 weakly similar to UP|AAR24662 (AAR24662) At5g26960, partial (22%)
Length = 505
Score = 35.8 bits (81), Expect = 0.005
Identities = 17/48 (35%), Positives = 27/48 (55%)
Frame = +2
Query: 13 PPAVDKINSLPDEILSQILSLIPVEEAAATSILSKRWTHLWKFTDCID 60
PP I+SLPD+I+ L+ +P + S++ +RW+HL D D
Sbjct: 116 PPTT--ISSLPDDIILDFLTRVPPSSLPSLSLVCRRWSHLLHSPDFSD 253
>AV419392
Length = 318
Score = 32.7 bits (73), Expect = 0.040
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 30 ILSLIPVEEAAATSILSKRWTHLWKFTDCIDFTDIILNDTDSTYSFNDSMSSILLSRYHN 89
ILS + ++A S+LSKRW LW+ +LN ++++ S ++ +L H+
Sbjct: 6 ILSYVETKDAMQCSVLSKRWRSLWRALP-------VLNFDSASFTHYSSFANFVLHVLHS 164
>AU251749
Length = 362
Score = 32.3 bits (72), Expect = 0.052
Identities = 15/28 (53%), Positives = 21/28 (74%)
Frame = +2
Query: 16 VDKINSLPDEILSQILSLIPVEEAAATS 43
VD I++LPD IL+ ILS +P ++ ATS
Sbjct: 134 VDWISALPDTILNFILSFLPTKQVVATS 217
>TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (SLF)-S4
protein, partial (10%)
Length = 551
Score = 30.4 bits (67), Expect = 0.20
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 22 LPDEILSQILSLIPVEEAAATSILSKRW 49
LPDE++ +ILS +PV+ ++SK W
Sbjct: 21 LPDELIIEILSWLPVKSLLQFRVVSKTW 104
>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5,
TAC clone:K14B20, partial (7%)
Length = 782
Score = 30.4 bits (67), Expect = 0.20
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 22 LPDEILSQILSLIPVEEAAATSILSKRW 49
LPDE++ +ILS +PV+ ++SK W
Sbjct: 48 LPDELIIEILSWLPVKSLLQFRVVSKTW 131
>BE122502
Length = 362
Score = 30.0 bits (66), Expect = 0.26
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -3
Query: 162 IWTIRSSNTFQILCCFWLDVRI 183
IW R+ N +I CCFWL +++
Sbjct: 321 IWKERNKNRIKI*CCFWLKMKL 256
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 29.3 bits (64), Expect = 0.44
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 5/46 (10%)
Frame = +3
Query: 9 EAATPPAVDKINSLP-----DEILSQILSLIPVEEAAATSILSKRW 49
+AATPP + P DE++ +ILSL+PV+ + K W
Sbjct: 24 DAATPPTLVADTEPPPPILIDELIWEILSLLPVKSLVRFRCVCKSW 161
>BP076980
Length = 399
Score = 28.5 bits (62), Expect = 0.75
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -1
Query: 82 ILLSRYHNINKWINFVVQHGLKYLRLGLHISV 113
I+L RYH+ W +GL+Y+R H+ +
Sbjct: 306 IILHRYHSYKYWYXLSQLYGLEYVR*NTHLII 211
>BI419994
Length = 549
Score = 27.7 bits (60), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 22 LPDEILSQILSLIPVEEAAATSILSKRWTHL 52
LPDE++ QIL +PV + K W +L
Sbjct: 47 LPDELILQILLRLPVRSLLRFKTVCKSWRYL 139
>TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete
Length = 3001
Score = 27.3 bits (59), Expect = 1.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 169 NTFQILCCFWLDVRIL 184
N F I CCFWL RI+
Sbjct: 584 NRFMICCCFWLRRRII 537
>AV413010
Length = 416
Score = 26.9 bits (58), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = +3
Query: 22 LPDEILSQILSLIPVEEAAATSILSKRW 49
LPDE++ QIL +PV +SK W
Sbjct: 96 LPDELIIQILLQLPVTSLLRFKSVSKSW 179
>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;}, partial (87%)
Length = 1385
Score = 26.9 bits (58), Expect = 2.2
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -1
Query: 35 PVEEAAATSILSKRWTHL----WKFTDCIDFTDIILNDTDSTYSFNDSMSSILLSRYHNI 90
P+E+ SK + L W D F D+++ T+ + + L +H I
Sbjct: 452 PIEQNTLRLCYSKTFKQLRMFNW*LNDLFYFFDLLV*TTNHIIC---RIRNFL--NFHQI 288
Query: 91 NKWINFVVQHGLKYL 105
++WINF Q+ +K++
Sbjct: 287 DQWINFAGQN*MKHI 243
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.141 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,423,931
Number of Sequences: 28460
Number of extensions: 69193
Number of successful extensions: 644
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of query: 188
length of database: 4,897,600
effective HSP length: 85
effective length of query: 103
effective length of database: 2,478,500
effective search space: 255285500
effective search space used: 255285500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC149131.10