
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149130.3 - phase: 0 /pseudo
(171 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19187 58 8e-10
TC9055 55 6e-09
TC12990 47 2e-06
BP049904 43 3e-05
BP038236 42 7e-05
BP059894 40 2e-04
AV765936 39 4e-04
TC14801 39 5e-04
BP079620 39 5e-04
AV777665 37 0.002
CB826878 37 0.002
TC13380 34 0.015
BP071080 33 0.020
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 33 0.026
TC15119 33 0.034
AV770906 29 0.38
TC18357 29 0.49
TC10709 27 1.4
AI967342 27 2.4
BP044806 26 3.2
>TC19187
Length = 632
Score = 58.2 bits (139), Expect = 8e-10
Identities = 27/69 (39%), Positives = 44/69 (63%)
Frame = +1
Query: 24 LIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNYETTKIDVWVMKEYGYR 83
+IV+ +L E + E+ LP + + E ++VL GCLC+ +++ T VW+MK+YG R
Sbjct: 73 IIVSLDLQKETYKEI-LPPDYEKEECSTPTLSVLKGCLCMNYDHKRTDFVVWMMKDYGVR 249
Query: 84 DSWCKLFTL 92
+SW KL T+
Sbjct: 250 ESWVKLVTI 276
>TC9055
Length = 577
Score = 55.1 bits (131), Expect = 6e-09
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Frame = +2
Query: 13 MAKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSL-LIDVAVLGGCLCITVNYETTK 71
+A K + +IV+ ++ E + + LP QG + L ++ VLG CLC+ +++ T
Sbjct: 17 LANKFEPFEQLVIVSLDMRQEAYRLLSLP---QGTSELPSAEIQVLGNCLCLFYDFKRTH 187
Query: 72 IDVWVMKEYGYRDSWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFEGIEVLLDVHYKK 131
W M EYG +SW L T+ HLR+ + + + +G +L K
Sbjct: 188 FVAWKMSEYGLPESWTPLLTI----SYEHLRWDHRFYLNQWLICLCGDGHIFMLAKKQKL 355
Query: 132 LFWYDLKSERVSYVE 146
+ Y+L V YVE
Sbjct: 356 VIIYNLSDNSVKYVE 400
>TC12990
Length = 518
Score = 47.0 bits (110), Expect = 2e-06
Identities = 21/39 (53%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
Frame = +1
Query: 56 VLGGCLCITVNY-ETTKIDVWVMKEYGYRDSWCKLFTLV 93
VLGGCLCI+ N ET VW MKE+G +SW +LF ++
Sbjct: 4 VLGGCLCISQNNKETHSFVVWQMKEFGVHESWTQLFNII 120
>BP049904
Length = 541
Score = 43.1 bits (100), Expect = 3e-05
Identities = 26/61 (42%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Frame = -3
Query: 44 LQGETSLLIDVAVLG---GCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCFTSH 100
LQ + + +D +L CLCI N D+WVMKEYG +SW KLF+ S F S
Sbjct: 479 LQPDYGIEVDYKILDVTRDCLCILANS-----DIWVMKEYGNSESWTKLFSF-SSNFLSR 318
Query: 101 L 101
L
Sbjct: 317 L 315
>BP038236
Length = 515
Score = 41.6 bits (96), Expect = 7e-05
Identities = 21/43 (48%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Frame = -1
Query: 56 VLGGCLC-ITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCF 97
VL CL ++ NY+ DVW+MKEYG + SW KLF++ K F
Sbjct: 515 VLRDCLSMLSGNYQVC--DVWLMKEYGNQQSWTKLFSVAKQLF 393
>BP059894
Length = 474
Score = 40.0 bits (92), Expect = 2e-04
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Frame = -3
Query: 52 IDVAVLGGCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCFTSH---LRYSNPIG 108
+++ VLG CLC+ + T W M EYG +SW ++ ++ F + LR+ +
Sbjct: 439 VEIQVLGNCLCLFHDDNRTHFVGWKMTEYGVPESWTRMLSISYQHFQCNDVILRHRWLVC 260
Query: 109 YSSDGSKVLF---EGIEVLLDVHYKKLFWYDLKSERVSYVEGIPKLF 152
DG+ ++ EG V++ ++L V Y++ PK F
Sbjct: 259 LCGDGNILMLAKDEGGLVII---------FNLSDNSVKYIKFPPKDF 146
>AV765936
Length = 447
Score = 39.3 bits (90), Expect = 4e-04
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = -2
Query: 66 NYETTKIDVWVMKEYGYRDSWCKLFTL 92
++++ D+W+MKEYG ++SW KLFT+
Sbjct: 434 SFDSGSCDIWLMKEYGSKESWTKLFTV 354
>TC14801
Length = 595
Score = 38.9 bits (89), Expect = 5e-04
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 54 VAVLGGCLCITVNY-ETTKIDVWVMKEYGYRDSWCKLFTLV 93
+ VL GCLCI+ + ET V MKEYG +SW +LF ++
Sbjct: 101 LGVLRGCLCISQYHKETHSFVVSQMKEYGVNESWTQLFNII 223
>BP079620
Length = 355
Score = 38.9 bits (89), Expect = 5e-04
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = -2
Query: 73 DVWVMKEYGYRDSWCKLFTLVKSCFTSHLRY 103
DVWVMKEYG +SW KLF L S S + Y
Sbjct: 351 DVWVMKEYGNNESWTKLFRLPPSNSFSKIPY 259
>AV777665
Length = 425
Score = 36.6 bits (83), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 5/44 (11%)
Frame = +1
Query: 52 IDVAVLGGCLCITVNYETTKID-----VWVMKEYGYRDSWCKLF 90
+ + VL CL I V+ + + +WVMKEYG R+SW KLF
Sbjct: 91 LKLEVLRDCLSIIVHVRDFEDNEDYEYLWVMKEYGNRESWTKLF 222
>CB826878
Length = 635
Score = 36.6 bits (83), Expect = 0.002
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Frame = +3
Query: 28 FNLTLEIFNEV-------PLPAELQGETSLLIDV-AVLGGCLCITVNYETTK-IDVWVMK 78
+NL +++ N LP + L + + VL LC++ N + T+ VW MK
Sbjct: 288 YNLIMQLGNTARCSVSGTQLPEQCLNSPHLYMPILGVLRDSLCVSQNDKKTRNFVVWQMK 467
Query: 79 EYGYRDSWCKLFTLV-KSCFTSHLRYSNPIGY 109
E+G SW +LF ++ F S R++ + Y
Sbjct: 468 EFGVHKSWTQLFNIIGDDNFFSWPRFATCLSY 563
>TC13380
Length = 593
Score = 33.9 bits (76), Expect = 0.015
Identities = 33/108 (30%), Positives = 51/108 (46%), Gaps = 9/108 (8%)
Frame = +1
Query: 25 IVAFNLTLEIFNEVPLPA---------ELQGETSLLIDVAVLGGCLCITVNYETTKIDVW 75
I+AF+L + E+P P +L + L + V G +T + T I++W
Sbjct: 52 IIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWVHGRFFSLTAFQQDT-IEIW 228
Query: 76 VMKEYGYRDSWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFEGIEV 123
VMK+Y + SW K TLV +S L Y P+ + G V+ GI +
Sbjct: 229 VMKKYKVQSSWTK--TLV--VLSSKLLY--PLCSTKGGDIVMCSGINL 354
>BP071080
Length = 420
Score = 33.5 bits (75), Expect = 0.020
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 63 ITVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
I+++ ETT +W++ E ++SW KLFT+
Sbjct: 353 ISIHEETTTFHIWILGELCAKESWTKLFTV 264
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 33.1 bits (74), Expect = 0.026
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 25 IVAFNLTLEIFNEVPLPAELQGETSLLIDV----AVLGGCLCITVNYETTKIDVWVMKEY 80
I++ +L E+ + + LP + D+ VL LC+ N +W M E+
Sbjct: 892 IISLDLGSEVCSRLSLPCFPPPGPKCVYDLPPILGVLKDSLCVLHNNNDKTFVIWKMNEF 1071
Query: 81 GYRDSWCKLF 90
G +SW LF
Sbjct: 1072GAHESWTPLF 1101
>TC15119
Length = 520
Score = 32.7 bits (73), Expect = 0.034
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 43 ELQGETSLLIDVAVLGGCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
E GE +L+I L CLC + T VW M+++G R+SW +L +
Sbjct: 27 EKHGEPTLVI----LKNCLCACHEFLVT---VWQMEKFGVRESWTQLLKI 155
>AV770906
Length = 476
Score = 29.3 bits (64), Expect = 0.38
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = -1
Query: 73 DVWVMKEYGYRDSWCKL 89
++W+MKEY R SW K+
Sbjct: 371 EIWIMKEYKVRSSWTKI 321
>TC18357
Length = 893
Score = 28.9 bits (63), Expect = 0.49
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 125 LDVHYKKLFWYDLKSERVSYVEGIPKLFFFKKPMIS 160
L ++ LFWY +++ Y + K+F FKK IS
Sbjct: 460 LTIYIMMLFWYKIRTNTYYYHIVLGKIFKFKKSKIS 353
>TC10709
Length = 578
Score = 27.3 bits (59), Expect = 1.4
Identities = 11/37 (29%), Positives = 22/37 (58%)
Frame = +3
Query: 56 VLGGCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
VLG + + ++ + + VW M +YG +SW +L ++
Sbjct: 24 VLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSI 134
>AI967342
Length = 450
Score = 26.6 bits (57), Expect = 2.4
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 52 IDVAVLGGCLCITV--NYETTKIDVWVMKEY 80
+ + V+G CLC+ + + ++W+MKEY
Sbjct: 168 VHLRVMGDCLCLCNPNSSDRAMAEIWMMKEY 76
>BP044806
Length = 538
Score = 26.2 bits (56), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 2/28 (7%)
Frame = -1
Query: 112 DGSKVLFEGIEV--LLDVHYKKLFWYDL 137
DGS GI+V L+D+H++ FW DL
Sbjct: 433 DGSDGFGGGIDVWCLMDLHWRFRFWVDL 350
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.143 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,302,608
Number of Sequences: 28460
Number of extensions: 45666
Number of successful extensions: 294
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of query: 171
length of database: 4,897,600
effective HSP length: 84
effective length of query: 87
effective length of database: 2,506,960
effective search space: 218105520
effective search space used: 218105520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC149130.3