Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149130.3 - phase: 0 /pseudo
         (171 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19187                                                                58  8e-10
TC9055                                                                 55  6e-09
TC12990                                                                47  2e-06
BP049904                                                               43  3e-05
BP038236                                                               42  7e-05
BP059894                                                               40  2e-04
AV765936                                                               39  4e-04
TC14801                                                                39  5e-04
BP079620                                                               39  5e-04
AV777665                                                               37  0.002
CB826878                                                               37  0.002
TC13380                                                                34  0.015
BP071080                                                               33  0.020
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific...    33  0.026
TC15119                                                                33  0.034
AV770906                                                               29  0.38
TC18357                                                                29  0.49
TC10709                                                                27  1.4
AI967342                                                               27  2.4
BP044806                                                               26  3.2

>TC19187 
          Length = 632

 Score = 58.2 bits (139), Expect = 8e-10
 Identities = 27/69 (39%), Positives = 44/69 (63%)
 Frame = +1

Query: 24  LIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNYETTKIDVWVMKEYGYR 83
           +IV+ +L  E + E+ LP + + E      ++VL GCLC+  +++ T   VW+MK+YG R
Sbjct: 73  IIVSLDLQKETYKEI-LPPDYEKEECSTPTLSVLKGCLCMNYDHKRTDFVVWMMKDYGVR 249

Query: 84  DSWCKLFTL 92
           +SW KL T+
Sbjct: 250 ESWVKLVTI 276


>TC9055 
          Length = 577

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
 Frame = +2

Query: 13  MAKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSL-LIDVAVLGGCLCITVNYETTK 71
           +A K +     +IV+ ++  E +  + LP   QG + L   ++ VLG CLC+  +++ T 
Sbjct: 17  LANKFEPFEQLVIVSLDMRQEAYRLLSLP---QGTSELPSAEIQVLGNCLCLFYDFKRTH 187

Query: 72  IDVWVMKEYGYRDSWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFEGIEVLLDVHYKK 131
              W M EYG  +SW  L T+       HLR+ +    +     +  +G   +L    K 
Sbjct: 188 FVAWKMSEYGLPESWTPLLTI----SYEHLRWDHRFYLNQWLICLCGDGHIFMLAKKQKL 355

Query: 132 LFWYDLKSERVSYVE 146
           +  Y+L    V YVE
Sbjct: 356 VIIYNLSDNSVKYVE 400


>TC12990 
          Length = 518

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 21/39 (53%), Positives = 27/39 (68%), Gaps = 1/39 (2%)
 Frame = +1

Query: 56 VLGGCLCITVNY-ETTKIDVWVMKEYGYRDSWCKLFTLV 93
          VLGGCLCI+ N  ET    VW MKE+G  +SW +LF ++
Sbjct: 4  VLGGCLCISQNNKETHSFVVWQMKEFGVHESWTQLFNII 120


>BP049904 
          Length = 541

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 26/61 (42%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
 Frame = -3

Query: 44  LQGETSLLIDVAVLG---GCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCFTSH 100
           LQ +  + +D  +L     CLCI  N      D+WVMKEYG  +SW KLF+   S F S 
Sbjct: 479 LQPDYGIEVDYKILDVTRDCLCILANS-----DIWVMKEYGNSESWTKLFSF-SSNFLSR 318

Query: 101 L 101
           L
Sbjct: 317 L 315


>BP038236 
          Length = 515

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 21/43 (48%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
 Frame = -1

Query: 56  VLGGCLC-ITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCF 97
           VL  CL  ++ NY+    DVW+MKEYG + SW KLF++ K  F
Sbjct: 515 VLRDCLSMLSGNYQVC--DVWLMKEYGNQQSWTKLFSVAKQLF 393


>BP059894 
          Length = 474

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
 Frame = -3

Query: 52  IDVAVLGGCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCFTSH---LRYSNPIG 108
           +++ VLG CLC+  +   T    W M EYG  +SW ++ ++    F  +   LR+   + 
Sbjct: 439 VEIQVLGNCLCLFHDDNRTHFVGWKMTEYGVPESWTRMLSISYQHFQCNDVILRHRWLVC 260

Query: 109 YSSDGSKVLF---EGIEVLLDVHYKKLFWYDLKSERVSYVEGIPKLF 152
              DG+ ++    EG  V++         ++L    V Y++  PK F
Sbjct: 259 LCGDGNILMLAKDEGGLVII---------FNLSDNSVKYIKFPPKDF 146


>AV765936 
          Length = 447

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = -2

Query: 66  NYETTKIDVWVMKEYGYRDSWCKLFTL 92
           ++++   D+W+MKEYG ++SW KLFT+
Sbjct: 434 SFDSGSCDIWLMKEYGSKESWTKLFTV 354


>TC14801 
          Length = 595

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 54  VAVLGGCLCITVNY-ETTKIDVWVMKEYGYRDSWCKLFTLV 93
           + VL GCLCI+  + ET    V  MKEYG  +SW +LF ++
Sbjct: 101 LGVLRGCLCISQYHKETHSFVVSQMKEYGVNESWTQLFNII 223


>BP079620 
          Length = 355

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = -2

Query: 73  DVWVMKEYGYRDSWCKLFTLVKSCFTSHLRY 103
           DVWVMKEYG  +SW KLF L  S   S + Y
Sbjct: 351 DVWVMKEYGNNESWTKLFRLPPSNSFSKIPY 259


>AV777665 
          Length = 425

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 5/44 (11%)
 Frame = +1

Query: 52  IDVAVLGGCLCITVNYETTKID-----VWVMKEYGYRDSWCKLF 90
           + + VL  CL I V+    + +     +WVMKEYG R+SW KLF
Sbjct: 91  LKLEVLRDCLSIIVHVRDFEDNEDYEYLWVMKEYGNRESWTKLF 222


>CB826878 
          Length = 635

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
 Frame = +3

Query: 28  FNLTLEIFNEV-------PLPAELQGETSLLIDV-AVLGGCLCITVNYETTK-IDVWVMK 78
           +NL +++ N          LP +      L + +  VL   LC++ N + T+   VW MK
Sbjct: 288 YNLIMQLGNTARCSVSGTQLPEQCLNSPHLYMPILGVLRDSLCVSQNDKKTRNFVVWQMK 467

Query: 79  EYGYRDSWCKLFTLV-KSCFTSHLRYSNPIGY 109
           E+G   SW +LF ++    F S  R++  + Y
Sbjct: 468 EFGVHKSWTQLFNIIGDDNFFSWPRFATCLSY 563


>TC13380 
          Length = 593

 Score = 33.9 bits (76), Expect = 0.015
 Identities = 33/108 (30%), Positives = 51/108 (46%), Gaps = 9/108 (8%)
 Frame = +1

Query: 25  IVAFNLTLEIFNEVPLPA---------ELQGETSLLIDVAVLGGCLCITVNYETTKIDVW 75
           I+AF+L  +   E+P P          +L  +  L   + V G    +T   + T I++W
Sbjct: 52  IIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWVHGRFFSLTAFQQDT-IEIW 228

Query: 76  VMKEYGYRDSWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFEGIEV 123
           VMK+Y  + SW K  TLV    +S L Y  P+  +  G  V+  GI +
Sbjct: 229 VMKKYKVQSSWTK--TLV--VLSSKLLY--PLCSTKGGDIVMCSGINL 354


>BP071080 
          Length = 420

 Score = 33.5 bits (75), Expect = 0.020
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 63  ITVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
           I+++ ETT   +W++ E   ++SW KLFT+
Sbjct: 353 ISIHEETTTFHIWILGELCAKESWTKLFTV 264


>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
           protein a, partial (9%)
          Length = 1602

 Score = 33.1 bits (74), Expect = 0.026
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +1

Query: 25  IVAFNLTLEIFNEVPLPAELQGETSLLIDV----AVLGGCLCITVNYETTKIDVWVMKEY 80
           I++ +L  E+ + + LP         + D+     VL   LC+  N       +W M E+
Sbjct: 892 IISLDLGSEVCSRLSLPCFPPPGPKCVYDLPPILGVLKDSLCVLHNNNDKTFVIWKMNEF 1071

Query: 81  GYRDSWCKLF 90
           G  +SW  LF
Sbjct: 1072GAHESWTPLF 1101


>TC15119 
          Length = 520

 Score = 32.7 bits (73), Expect = 0.034
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 43 ELQGETSLLIDVAVLGGCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
          E  GE +L+I    L  CLC    +  T   VW M+++G R+SW +L  +
Sbjct: 27 EKHGEPTLVI----LKNCLCACHEFLVT---VWQMEKFGVRESWTQLLKI 155


>AV770906 
          Length = 476

 Score = 29.3 bits (64), Expect = 0.38
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = -1

Query: 73  DVWVMKEYGYRDSWCKL 89
           ++W+MKEY  R SW K+
Sbjct: 371 EIWIMKEYKVRSSWTKI 321


>TC18357 
          Length = 893

 Score = 28.9 bits (63), Expect = 0.49
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 125 LDVHYKKLFWYDLKSERVSYVEGIPKLFFFKKPMIS 160
           L ++   LFWY +++    Y   + K+F FKK  IS
Sbjct: 460 LTIYIMMLFWYKIRTNTYYYHIVLGKIFKFKKSKIS 353


>TC10709 
          Length = 578

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 11/37 (29%), Positives = 22/37 (58%)
 Frame = +3

Query: 56 VLGGCLCITVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
          VLG  + +  ++ +  + VW M +YG  +SW +L ++
Sbjct: 24 VLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSI 134


>AI967342 
          Length = 450

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 52  IDVAVLGGCLCITV--NYETTKIDVWVMKEY 80
           + + V+G CLC+    + +    ++W+MKEY
Sbjct: 168 VHLRVMGDCLCLCNPNSSDRAMAEIWMMKEY 76


>BP044806 
          Length = 538

 Score = 26.2 bits (56), Expect = 3.2
 Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 2/28 (7%)
 Frame = -1

Query: 112 DGSKVLFEGIEV--LLDVHYKKLFWYDL 137
           DGS     GI+V  L+D+H++  FW DL
Sbjct: 433 DGSDGFGGGIDVWCLMDLHWRFRFWVDL 350


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.143    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,302,608
Number of Sequences: 28460
Number of extensions: 45666
Number of successful extensions: 294
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of query: 171
length of database: 4,897,600
effective HSP length: 84
effective length of query: 87
effective length of database: 2,506,960
effective search space: 218105520
effective search space used: 218105520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)


Medicago: description of AC149130.3