BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149130.2 + phase: 0
(239 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV779545 91 2e-23
AV769247 94 2e-20
TC8571 similar to UP|Q41691 (Q41691) Carboxypeptidase II (Fragme... 27 2.4
TC12189 similar to UP|Q9FKV6 (Q9FKV6) Eukaryotic translation ini... 27 3.2
TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%) 27 4.1
TC7967 UP|ATPB_LOTJA (Q9BBU0) ATP synthase beta chain , complete 27 4.1
TC16021 26 5.4
BP053416 26 7.0
AV411440 25 9.2
>AV779545
Length = 471
Score = 91.3 bits (225), Expect(2) = 2e-23
Identities = 45/73 (61%), Positives = 56/73 (76%)
Frame = -3
Query: 138 PYTLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIVKDLRMSTLTL 197
P L ++F++M ESRRLP +++NLLI YVLVLTLFSD FRTDY DI KDLRMS L +
Sbjct: 469 PPPLRYKFSSMSGAAESRRLPYDELNLLICYVLVLTLFSDVFRTDYTDISKDLRMSVLLV 290
Query: 198 RPIFEHLGCKFIS 210
RP + LGC+F+S
Sbjct: 289 RPPYSDLGCEFLS 251
Score = 33.5 bits (75), Expect(2) = 2e-23
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = -2
Query: 213 KVSYATLPIPLTFSQIKKRKRK 234
++SYATLP+PL F K RKRK
Sbjct: 242 QISYATLPVPLKFPDSKPRKRK 177
>AV769247
Length = 392
Score = 94.0 bits (232), Expect = 2e-20
Identities = 46/70 (65%), Positives = 53/70 (75%)
Frame = -1
Query: 165 LISYVLVLTLFSDDFRTDYRDIVKDLRMSTLTLRPIFEHLGCKFISSQKVSYATLPIPLT 224
LI YVLVLTLF D+FRT Y DI KDLRMS L +R + LGCKF+S K+SYATLP+PL
Sbjct: 392 LICYVLVLTLFFDEFRTGYPDISKDLRMSVLLVRQHYSDLGCKFLSQNKISYATLPVPLK 213
Query: 225 FSQIKKRKRK 234
F K+RKRK
Sbjct: 212 FPDSKQRKRK 183
>TC8571 similar to UP|Q41691 (Q41691) Carboxypeptidase II (Fragment) ,
partial (54%)
Length = 713
Score = 27.3 bits (59), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 165 LISYVLVLTLFSDDFRTDYRDIVKDLRMSTLTLRPIFEHLGCKF 208
L ++ ++L S FR RDI+ L L P F HL C F
Sbjct: 535 LFNWRMILAWLSTSFR---RDILSTLFNCQFPLHPAF*HLKCSF 413
>TC12189 similar to UP|Q9FKV6 (Q9FKV6) Eukaryotic translation initiation
factor 3 subunit 7, partial (30%)
Length = 658
Score = 26.9 bits (58), Expect = 3.2
Identities = 22/71 (30%), Positives = 30/71 (41%)
Frame = +3
Query: 2 KRDEEPEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAE 61
+RDEE EAKK E KE A + H+ R N +A + A + +
Sbjct: 366 RRDEEVEAKKREAE-------KERARRDRLYHLNRS----NPNAPRREAAVFKSSVDIQP 512
Query: 62 EWNYLQDIYYS 72
EWN I +S
Sbjct: 513 EWNMHDQIPFS 545
>TC8092 similar to UP|Q8MLI6 (Q8MLI6) CG30127-PA, partial (3%)
Length = 1073
Score = 26.6 bits (57), Expect = 4.1
Identities = 12/39 (30%), Positives = 20/39 (50%)
Frame = +3
Query: 121 KDQHSMDGISSSKFEKLPYTLYHRFTTMFDVTESRRLPP 159
+ +H+ + S+ + P++L HR TTM D PP
Sbjct: 6 RHEHTNLALLSNSPQLAPHSLSHRLTTMADRVHPHTSPP 122
>TC7967 UP|ATPB_LOTJA (Q9BBU0) ATP synthase beta chain , complete
Length = 2457
Score = 26.6 bits (57), Expect = 4.1
Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 27/178 (15%)
Frame = -3
Query: 83 LYPSFIRNRINRLKKIEDDSE--------KKKLSCILSFINY---LVKFKDQHSMDGISS 131
+YP F + I R KKI D+ E KKL IL F+ + F SM SS
Sbjct: 529 IYPFFEK*IIRR*KKIFDNKES*SVNSIINKKLK*ILHFLGTTQPIQLFTYSISMIEFSS 350
Query: 132 SKFEKLPY----------------TLYHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLF 175
S L + T+ R + F+ R +LISY L +
Sbjct: 349 STQSFLKFQFEEIFQKYFICMSL*TILFRLSMEFEPELHLRFSFSLSLVLISYFLSIRFI 170
Query: 176 SDDFRTDYRDIVKDLRMSTLTLRPIFEHLGCKFISSQKVSYATLPIPLTFSQIKKRKR 233
S + T + S L H+ +S +V++ + ++ + KK KR
Sbjct: 169 SSIYFTAFFSYANCAYFSI*DL-----HIQPTSLSRSRVNFLLFRLEISIQKFKKDKR 11
>TC16021
Length = 586
Score = 26.2 bits (56), Expect = 5.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 83 LYPSFIRNRINRLKKIEDDSEKKKLSC 109
+ PSF+ ++ +L+++E KK L+C
Sbjct: 42 IMPSFLLQKLAKLQRLETRHRKKSLTC 122
>BP053416
Length = 432
Score = 25.8 bits (55), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = -2
Query: 202 EHLGCKFISSQKVSYATLPIPLTF 225
+H C+ ISS +S +PIP F
Sbjct: 101 QHFSCQ*ISSSPLSILLMPIPFNF 30
>AV411440
Length = 420
Score = 25.4 bits (54), Expect = 9.2
Identities = 12/51 (23%), Positives = 23/51 (44%)
Frame = -2
Query: 7 PEAKKNLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKI 57
P +++ + N+++ T L H HIP + +A + +LD I
Sbjct: 305 PTTQRSRHKSTPNLDISHTVLIQRRFHNRIHIPSSSPTAVNTHVSGILDWI 153
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,571,211
Number of Sequences: 28460
Number of extensions: 44492
Number of successful extensions: 267
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of query: 239
length of database: 4,897,600
effective HSP length: 87
effective length of query: 152
effective length of database: 2,421,580
effective search space: 368080160
effective search space used: 368080160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC149130.2