TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149129.2 + phase: 0 
         (261 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16083 similar to UP|Q940L9 (Q940L9) At2g44770/F16B22.26, parti...   162  4e-41
TC17201 similar to UP|Q940L9 (Q940L9) At2g44770/F16B22.26, parti...   115  1e-26
TC8280                                                                 81  2e-16
AV420361                                                               73  6e-14
TC8281 similar to UP|Q940L9 (Q940L9) At2g44770/F16B22.26, partia...    45  3e-12
BP063130                                                               59  6e-10
TC8095                                                                 32  0.11
TC7815 similar to UP|Q9AVB5 (Q9AVB5) Plasma membrane intrinsic p...    28  1.6
AW720038                                                               28  1.6
TC19736 homologue to UP|RL34_PEA (P40590) 60S ribosomal protein ...    27  2.7
TC9847 similar to UP|AAR14272 (AAR14272) Predicted protein, part...    27  3.5
TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%)           26  7.9

>TC16083 similar to UP|Q940L9 (Q940L9) At2g44770/F16B22.26, partial (42%)
          Length = 788

 Score =  162 bits (411), Expect = 4e-41
 Identities = 84/112 (75%), Positives = 89/112 (79%)
 Frame = +1

Query: 150 SRKEIVQCGSTRLRLLVLTLHSCLFKC*ILKQLSHGHWWEQLS*NSLQKMSRPLIFSIA* 209
           SRKE  QCG+T L LLVLT HSCLF+C ILKQ SHGH  EQLS N LQK ++ LIFSIA 
Sbjct: 4   SRKEFDQCGNTHLLLLVLT*HSCLFRCWILKQSSHGHL*EQLSFNFLQKTNQLLIFSIAL 183

Query: 210 HSS*WTINGFPCTRHTWILIQ**NLHAVSWRKNFSLKTLHN*KMYPHTNFSH 261
            SS*W INGF C  HTWILIQ**NLHAVSWR +F LKTLH  KMYPHTNFSH
Sbjct: 184 RSS*WIINGFLCAHHTWILIQ**NLHAVSWRMSFCLKTLHGLKMYPHTNFSH 339


>TC17201 similar to UP|Q940L9 (Q940L9) At2g44770/F16B22.26, partial (32%)
          Length = 576

 Score =  115 bits (287), Expect = 1e-26
 Identities = 59/81 (72%), Positives = 66/81 (80%)
 Frame = +2

Query: 181 QLSHGHWWEQLS*NSLQKMSRPLIFSIA*HSS*WTINGFPCTRHTWILIQ**NLHAVSWR 240
           Q SH HW EQLS*N LQKM++ LI SIA* SS*W INGF C  HTWILIQ**NLH VSWR
Sbjct: 14  Q*SHTHW*EQLS*NFLQKMNQLLICSIA*LSS*WIINGFLCVPHTWILIQ**NLHDVSWR 193

Query: 241 KNFSLKTLHN*KMYPHTNFSH 261
           K++SLKT H+ K+YPHTN+ H
Sbjct: 194 KSYSLKT*HSLKIYPHTNYFH 256


>TC8280 
          Length = 502

 Score = 80.9 bits (198), Expect = 2e-16
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = +1

Query: 104 LNGLISEQWKDMGWQGKDPSTDFRGGGYISLENLLFFARNFPIFCGSR 151
           L+GLIS+QWK+M WQ KDPSTDFRGGG+ISLEN LFF+RNFP    SR
Sbjct: 1   LHGLISDQWKEMDWQAKDPSTDFRGGGFISLENFLFFSRNFPELKRSR 144


>AV420361 
          Length = 250

 Score = 72.8 bits (177), Expect = 6e-14
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 1   MDDRGGSFVAVRRISQGLDRGNAYHSSSAEFVTGSTAWIGRGLSCVCAQRRESDARLS 58
           MDDRGGSFVAVRR+  G    +  +S+SAE V GS AW+G+GLSCVC QRR+SDA  S
Sbjct: 82  MDDRGGSFVAVRRVPHGETCHS--NSNSAEAVAGSAAWLGKGLSCVCVQRRDSDASSS 249


>TC8281 similar to UP|Q940L9 (Q940L9) At2g44770/F16B22.26, partial (14%)
          Length = 509

 Score = 45.4 bits (106), Expect(2) = 3e-12
 Identities = 18/19 (94%), Positives = 19/19 (99%)
 Frame = +2

Query: 106 GLISEQWKDMGWQGKDPST 124
           GLISEQWK+MGWQGKDPST
Sbjct: 2   GLISEQWKEMGWQGKDPST 58



 Score = 41.6 bits (96), Expect(2) = 3e-12
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +1

Query: 126 FRGGGYISLENLLFFARNFP 145
           FRGGG+ISLEN LFF+RNFP
Sbjct: 61  FRGGGFISLENFLFFSRNFP 120


>BP063130 
          Length = 504

 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = -2

Query: 92  RALWNAAFPEEELNGLISEQWKDMGWQGKDPS 123
           RALWNAAFPEE+L+GLIS+QWK+MGWQ  DPS
Sbjct: 104 RALWNAAFPEEKLHGLISDQWKEMGWQA-DPS 12


>TC8095 
          Length = 1147

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 30/108 (27%), Positives = 46/108 (41%)
 Frame = +1

Query: 147 FCGSRKEIVQCGSTRLRLLVLTLHSCLFKC*ILKQLSHGHWWEQLS*NSLQKMSRPLIFS 206
           +C ++ E  Q G+  L+ L      C  +C I KQ  H    + +S + L++M       
Sbjct: 601 YCINKMEPEQSGNIHLQ*LESIFLLCWRRCWIFKQGIHLLCQDSVSCSCLRRMKWHSTSF 780

Query: 207 IA*HSS*WTINGFPCTRHTWILIQ**NLHAVSWRKNFSLKTLHN*KMY 254
           I     *W ++G     H W L   *+    S   +  LKT   *K+Y
Sbjct: 781 IVLPIK*WMLSG*QSVLHIWNLTMF*SPQERS*SVSLLLKTSPG*KIY 924


>TC7815 similar to UP|Q9AVB5 (Q9AVB5) Plasma membrane intrinsic protein
           2-1, complete
          Length = 1450

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/41 (36%), Positives = 21/41 (50%)
 Frame = +3

Query: 10  AVRRISQGLDRGNAYHSSSAEFVTGSTAWIGRGLSCVCAQR 50
           AV R     D+G + HSS+  F      WIG+GL  +  Q+
Sbjct: 390 AVHRTQGVFDKGTSIHSSTV-FRCNQWCWIGQGLPKIILQQ 509


>AW720038 
          Length = 561

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 29  AEFVTGSTAWIGRGLSCVC-AQRRESDARLSFDLTPYQEECLQRLQSRID 77
           A  V GS + IGR LS    A   +++  L   LTP QEE L+ L+ R++
Sbjct: 410 ANIVLGSGSLIGRLLSVSSTALYLQNNRMLP*PLTPLQEERLRNLRQRLE 559


>TC19736 homologue to UP|RL34_PEA (P40590) 60S ribosomal protein L34,
           partial (98%)
          Length = 612

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 64  YQEECLQRLQSRIDVPYDSSIPEHQASLRALWNAAFPEEELNGLISEQWKDMGWQGKDPS 123
           ++E+ +QRL  R    Y +   +H       W A  P+ +  G    QW  +    K+ S
Sbjct: 9   HEEKMVQRLTYRKRHSYATKSNQHXGRQNPRWEARLPDHQEEG----QWTQVPCHWKEDS 176

Query: 124 TD 125
            D
Sbjct: 177 GD 182


>TC9847 similar to UP|AAR14272 (AAR14272) Predicted protein, partial (73%)
          Length = 952

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 26  SSSAEFVTGSTAWIGRGLSCVCAQRRESDARLSF 59
           S+ A  +  ST+WI     C C++ RES +  SF
Sbjct: 656 STRARLLRSSTSWI-----CKCSRHRESSSSCSF 570


>TC16033 UP|Q7X9C1 (Q7X9C1) NIN-like protein 1, partial (88%)
          Length = 2554

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/63 (26%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
 Frame = +3

Query: 60  DLTPYQEECLQRLQSRIDVPYDSSIPEHQASLRALWNA-AFPEEELNGLISEQWKDMGWQ 118
           DLT  +   +Q  +   D  Y++++PE Q  LR+  +    P       +++ W     Q
Sbjct: 591 DLTSLKHSSIQNAKQARDKSYEAALPEIQEVLRSACHMHKLP-------LAQTWVSCFQQ 749

Query: 119 GKD 121
           GKD
Sbjct: 750 GKD 758


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.337    0.145    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,697,934
Number of Sequences: 28460
Number of extensions: 90904
Number of successful extensions: 580
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of query: 261
length of database: 4,897,600
effective HSP length: 88
effective length of query: 173
effective length of database: 2,393,120
effective search space: 414009760
effective search space used: 414009760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 54 (25.4 bits)