TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149129.11 - phase: 0 /pseudo
         (234 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12487 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein (At1g7938...   175  7e-45
TC19175 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein (At1g7938...    72  8e-14
BP041242                                                               60  4e-10
TC18031 similar to UP|Q941L3 (Q941L3) BONZAI1, partial (16%)           31  0.16
TC12779 weakly similar to UP|Q9FMB9 (Q9FMB9) Cysteine-tRNA ligas...    29  0.61
AV766722                                                               27  4.0
TC18738 similar to UP|CAPB_ARATH (Q9M9G7) Probable F-actin cappi...    27  4.0

>TC12487 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein
           (At1g79380/T8K14_20), partial (57%)
          Length = 1091

 Score =  175 bits (443), Expect = 7e-45
 Identities = 92/174 (52%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
 Frame = +2

Query: 58  DVFSFYRDERFCNGHEEILSRYREIRPNIQPAGTTSFAPIIEMATKIVDQSGGKHHVLVI 117
           +VFSF+ D   C+G +E+L+ Y++I PN++ +G TS+AP+IE A  IV++S G+ HVLV+
Sbjct: 5   EVFSFHSDHSPCHGFQEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQFHVLVV 184

Query: 118 ISDGQVIRRNDAQHGSLSSQKLHTVDAIVEARKFPLSIILVGVGDGPWDMVKEFQDNIKM 177
           I+DGQV R  D + G LS Q+  T+ AIV+A  +PL+I+LVGVGDGPW+ +++F D  K+
Sbjct: 185 IADGQVTRSVDTEDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDD--KI 358

Query: 178 QTRTFHNFKFVNFTEIMSKSNNISPSLKE-AEILLAIREILFQYKAAKELGLLG 230
             R + NF+FVNFT+IMSK  N SPS KE A  L A+ EI FQYKA  E G+LG
Sbjct: 359 PARDYDNFQFVNFTDIMSK--NTSPSEKETAFALAALMEIPFQYKATMEFGILG 514


>TC19175 similar to UP|Q9SAL0 (Q9SAL0) T8K14.20 protein
           (At1g79380/T8K14_20), partial (24%)
          Length = 420

 Score = 72.0 bits (175), Expect = 8e-14
 Identities = 35/53 (66%), Positives = 40/53 (75%)
 Frame = +2

Query: 4   SGKYSLIRQSLHDIRNVPNSCEKAISIIGKKFSPFLDDNLIPCFGFGDASTSD 56
           +GK S   +SLH I + PN  EKAISIIGK  +PF DDNLIPCFGFGDA+T D
Sbjct: 260 TGKISFKNRSLHAIGDSPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHD 418


>BP041242 
          Length = 542

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 30/51 (58%), Positives = 36/51 (69%)
 Frame = +1

Query: 4   SGKYSLIRQSLHDIRNVPNSCEKAISIIGKKFSPFLDDNLIPCFGFGDAST 54
           +G  S  R+ LH I +  N  E+AISIIGK  S F +DNLIPC+GFGDAST
Sbjct: 388 TGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCYGFGDAST 540


>TC18031 similar to UP|Q941L3 (Q941L3) BONZAI1, partial (16%)
          Length = 709

 Score = 31.2 bits (69), Expect = 0.16
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 141 TVDAIVEARKFPLSIILVGVGDGPWDMVKEFQD 173
           T DA+V+A   PLSI++VGVG   +  +++  D
Sbjct: 26  TKDALVKASDLPLSILIVGVGGADFKEMEQILD 124


>TC12779 weakly similar to UP|Q9FMB9 (Q9FMB9) Cysteine-tRNA ligase, partial
           (45%)
          Length = 811

 Score = 29.3 bits (64), Expect = 0.61
 Identities = 23/76 (30%), Positives = 38/76 (49%), Gaps = 2/76 (2%)
 Frame = +1

Query: 66  ERFCNGHEEILSRYREIRPNIQPAGTTSFAPIIEMATKIVDQSGGKHHVLVIISDGQVIR 125
           +RFCN ++  +S  +  RP+ +P  +     IIEM  +I+ ++G  + V     DG V  
Sbjct: 391 KRFCNEYDVDMSGLQCERPSTEPCVSDHIEKIIEMIQQII-KNGYAYEV-----DGDVFY 552

Query: 126 --RNDAQHGSLSSQKL 139
                  +G LS Q+L
Sbjct: 553 SVTEFPSYGMLSGQRL 600


>AV766722 
          Length = 477

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 50  GDASTSDHDVFSFYRDERFCNGHEEILSRY 79
           G +S+  HD+  F R  R C+GH   +S Y
Sbjct: 272 GQSSSGIHDLMFFLRT-RLCDGHHPCVSSY 358


>TC18738 similar to UP|CAPB_ARATH (Q9M9G7) Probable F-actin capping protein
           beta subunit (CapZ-beta), partial (96%)
          Length = 785

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 11/38 (28%), Positives = 19/38 (49%)
 Frame = +1

Query: 34  KFSPFLDDNLIPCFGFGDASTSDHDVFSFYRDERFCNG 71
           K+ P L+D  +P           +D+F+ YRD+ +  G
Sbjct: 256 KYHPPLEDGSLPSAELRKLEIEANDIFAIYRDQYYEGG 369


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,663,688
Number of Sequences: 28460
Number of extensions: 44602
Number of successful extensions: 202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of query: 234
length of database: 4,897,600
effective HSP length: 87
effective length of query: 147
effective length of database: 2,421,580
effective search space: 355972260
effective search space used: 355972260
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)