BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149127.3 + phase: 0
(218 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP069996 31 0.19
TC16259 weakly similar to UP|O23300 (O23300) Carnitine racemase ... 30 0.25
TC9860 UP|Q40197 (Q40197) RAB11G, complete 30 0.42
TC17130 similar to UP|AAR24679 (AAR24679) At3g50960, partial (36%) 29 0.55
AV427341 29 0.55
AW164060 29 0.72
BP049447 29 0.72
TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinog... 29 0.72
TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroq... 28 0.93
TC14975 homologue to UP|Q8LG37 (Q8LG37) AtPH1-like protein, part... 28 1.2
TC11465 similar to UP|Q9FJU5 (Q9FJU5) Pyrophosphate-dependent ph... 28 1.2
BP029500 28 1.2
AV420357 28 1.2
TC14503 28 1.6
TC17076 27 2.1
TC8096 weakly similar to GB|AAF89661.1|9622185|AF168782 acinusL ... 27 2.1
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 27 2.1
AW719969 27 2.1
TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTS... 27 2.1
TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F... 27 2.1
>BP069996
Length = 511
Score = 30.8 bits (68), Expect = 0.19
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 180 FSHGTSHFWVCLFSYFLFIFILFYISY 206
F+H HF+ C+ L+I+ LFY SY
Sbjct: 107 FTHQFLHFFSCIVFILLYIYRLFYFSY 27
>TC16259 weakly similar to UP|O23300 (O23300) Carnitine racemase like
protein (At4g14440), partial (75%)
Length = 910
Score = 30.4 bits (67), Expect = 0.25
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 22 PKKLSLPTILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGKPRSCHTR 69
P S PT G + AP PP T+ S P+ AP RSCH+R
Sbjct: 160 PPADSSPTASISHGPALPAPNPP---TIASSPWSIPFAPSWRRSCHSR 294
>TC9860 UP|Q40197 (Q40197) RAB11G, complete
Length = 1104
Score = 29.6 bits (65), Expect = 0.42
Identities = 16/45 (35%), Positives = 24/45 (52%)
Frame = +1
Query: 21 TPKKLSLPTILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGKPRS 65
TP+K L T P ++ AP+PPP T +S+ +P +P S
Sbjct: 268 TPRKSRL-RFGTPPAKNASAPSPPPTTEALSVLLLSTTSPAEPLS 399
>TC17130 similar to UP|AAR24679 (AAR24679) At3g50960, partial (36%)
Length = 549
Score = 29.3 bits (64), Expect = 0.55
Identities = 25/72 (34%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Frame = -1
Query: 145 KKNNRIDREGSFDFSSWSVEGGDKVKITRVKRRGSFSHGTSHFWVCLFSYF-LFIFILFY 203
+K+N+I R + FS + R G SHG S+ C F F LFI ++F
Sbjct: 420 QKSNKIRRRNAHSFSF-------STS*LILIRIGISSHGGSNSSTCTFIIFSLFIILIFL 262
Query: 204 I-SYPFMF-HSL 213
I +Y F++ HSL
Sbjct: 261 IVNYTFLYQHSL 226
>AV427341
Length = 432
Score = 29.3 bits (64), Expect = 0.55
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 36 FSSEAPTPPPRTTVI---SIPFKWEEAPGKPRSCHTRPELREREVNNVVRALELPPRLLS 92
+ +E P P + +I +PF WE PG P+ +++ ++ ++ ++ L LPP +
Sbjct: 180 YFNEDPLLSPASPLIRLSGVPFSWEHLPGIPKKQNSK-----KKQDSSMKLLPLPPPTTT 344
Query: 93 LERES 97
+ S
Sbjct: 345 SQHSS 359
>AW164060
Length = 406
Score = 28.9 bits (63), Expect = 0.72
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 38 SEAPTPPPRTTVISIPFKWEEAPGKPR 64
S P R +++PF WE PG P+
Sbjct: 114 SSMTNPSFRVAAVTVPFVWESQPGTPK 194
>BP049447
Length = 478
Score = 28.9 bits (63), Expect = 0.72
Identities = 23/76 (30%), Positives = 32/76 (41%), Gaps = 6/76 (7%)
Frame = +2
Query: 37 SSEAPTPPPRTTVISIPFKWE------EAPGKPRSCHTRPELREREVNNVVRALELPPRL 90
SS P PPP TT++ PFK P PRS P +NN + PP
Sbjct: 167 SSPPPPPPPPTTLLKSPFKTSTTTTTTTTPPPPRSKIHPP--*TTIINNSTLSSTQPPMT 340
Query: 91 LSLERESTGNIYAPSP 106
S + S ++ + +P
Sbjct: 341 TSWSKCSPPSLLSGTP 388
>TC8089 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (43%)
Length = 890
Score = 28.9 bits (63), Expect = 0.72
Identities = 23/88 (26%), Positives = 32/88 (36%)
Frame = +2
Query: 21 TPKKLSLPTILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNV 80
+P L T T P FS P+ PP TT P + P+S + P +
Sbjct: 200 SPWLLPPQTPTTSPAFSPSTPSSPPSTTTSPSPTSPPRSTNGPQS-PSAPSTTPPWTTSS 376
Query: 81 VRALELPPRLLSLERESTGNIYAPSPTT 108
+ PP S S+ AP +T
Sbjct: 377 QNTHQSPPSRTSSPSTSSSTTSAPRSST 460
>TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroquinone
glucosyltransferase (Arbutin synthase) , partial (52%)
Length = 885
Score = 28.5 bits (62), Expect = 0.93
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 4/148 (2%)
Frame = +2
Query: 19 YDTPKKLSLPTILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVN 78
Y++P S P RP + AP+PPP ++ S +P ++ P L
Sbjct: 299 YESPSPYSAPF---RPSATPSAPSPPPHSSSTSSALTPSTSPE-----NSAPPLTS---- 442
Query: 79 NVVRALELPPRLLSLERES--TGNIYAPSPTTV--LEGPYVGRAVSFTTSYRDNNNKDSV 134
+L PPR LS TG A S + + P R+ T S R K
Sbjct: 443 ---SSLPPPPRSLSSSTSLAWTGRFIASSENSPNRSKSPAPSRSTVQTFSTRFRTGKMKP 613
Query: 135 NFGSSRWGGLKKNNRIDREGSFDFSSWS 162
GSS + + GS+ +SWS
Sbjct: 614 TSGSS----TTQLDTAKPMGSWKTASWS 685
>TC14975 homologue to UP|Q8LG37 (Q8LG37) AtPH1-like protein, partial (86%)
Length = 892
Score = 28.1 bits (61), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = +3
Query: 29 TILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGKPRSCHTR 69
T+L P FS+ P+P R+++++ P AP + RS R
Sbjct: 447 TLLAAPSFSTPDPSPILRSSIMTAPNADGIAPRRSRSTRRR 569
>TC11465 similar to UP|Q9FJU5 (Q9FJU5) Pyrophosphate-dependent
phosphofructo-1-kinase-like protein, partial (24%)
Length = 720
Score = 28.1 bits (61), Expect = 1.2
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 184 TSHFWVCLF--SYFLFIFILFYISYPFMFHSL 213
TSH V L+ SYF+FIFIL +++ F SL
Sbjct: 7 TSHVPVPLYKQSYFIFIFILCFLNLSLDFGSL 102
>BP029500
Length = 443
Score = 28.1 bits (61), Expect = 1.2
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Frame = -1
Query: 174 VKRRGSFSHGTSHFWVCLFSYFLFIFI-LFYISYPFMFHSLFRIVL 218
VKR T +C+FS F F+FI L+ I Y F SL +++
Sbjct: 191 VKRLAFDKKMTKEIGICIFSEFFFLFIPLYPILYFFNVTSLVLLIV 54
>AV420357
Length = 329
Score = 28.1 bits (61), Expect = 1.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRP 70
P PPPRTT S + + + +PR C RP
Sbjct: 182 PWPPPRTTASSSRRRPQPSWPRPRRCWQRP 93
>TC14503
Length = 1110
Score = 27.7 bits (60), Expect = 1.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 159 SSWSVEGGDKVKITRVKRRGSFSHGTSHFWVCLFSY 194
S W ++ + +++R + R F G + FWV LFS+
Sbjct: 40 SGWILQK*EDDEVSRKEGRVVFLRGKNKFWVLLFSW 147
>TC17076
Length = 644
Score = 27.3 bits (59), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Frame = +2
Query: 138 SSRWGGL---KKNNRIDREG--SFDFSSWSVEGGDKVKITRVKRRGSFSHGTSHFW 188
S+ WGG K +R R SF V+GG + +++++R + SHG +W
Sbjct: 65 STTWGGENGHKLGHRFARSNA*SFSHEMVQVDGGTV*RSSQLEKRRNASHGKGLWW 232
>TC8096 weakly similar to GB|AAF89661.1|9622185|AF168782 acinusL protein
{Mus musculus;} , partial (3%)
Length = 1044
Score = 27.3 bits (59), Expect = 2.1
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 41 PTPPPRTTVISIPFKWEEAPGKPRSCHTRPELR-EREVNNVVRALELPPRLLSLERESTG 99
P PPP+ +S+P AP P S P R +RE + + AL PP L +
Sbjct: 31 PPPPPQAASVSVP---TVAPA-PSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARE 198
Query: 100 NIYAPSP 106
+ +P P
Sbjct: 199 RLPSPPP 219
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 27.3 bits (59), Expect = 2.1
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 2/44 (4%)
Frame = -2
Query: 22 PKKLSLPTILTRPGFSS--EAPTPPPRTTVISIPFKWEEAPGKP 63
P KL +++ F E+P P PRTT++ + E P +P
Sbjct: 700 PAKLERSPVISLSSFDGGVESPEPHPRTTLVRVANLSGELPPRP 569
>AW719969
Length = 263
Score = 27.3 bits (59), Expect = 2.1
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +3
Query: 29 TILTRPGFSSEAPTPPPRTTVISIPFKWEEAPGKPRSCHTRPELREREVNNVVRALELPP 88
T +TRP ++ PPPR + +P + P P S P R R+ N L LPP
Sbjct: 42 TAITRPPRTNHLHPPPPRRSPRILP----QPPHTPTS---PPRRRTRDPN----PLSLPP 188
Query: 89 R 89
R
Sbjct: 189R 191
>TC14166 weakly similar to UP|Q9U929 (Q9U929) Splicing factor pTSR1, partial
(7%)
Length = 1473
Score = 27.3 bits (59), Expect = 2.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 10 DHDDELRSNYDTPKKLSLPTILTRPGFSSEAP--TPPPRTT 48
D ++ SN K SLP+I RPG+S+ P T P+ T
Sbjct: 256 DSNNHSTSNKQKVGK*SLPSITKRPGYSTNNPKTTMTPKLT 378
>TC11700 homologue to GB|AAL06971.1|15810091|AY056083 AT4g30260/F9N11_110
{Arabidopsis thaliana;}, partial (45%)
Length = 561
Score = 27.3 bits (59), Expect = 2.1
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 3/55 (5%)
Frame = +2
Query: 21 TPKKLSLPTILTRPGFSSEAPTPPPRTTVIS---IPFKWEEAPGKPRSCHTRPEL 72
+P + S+P + P +S P P P + IS +P P P S TRPE+
Sbjct: 143 SPPRASIPVTTSSPFINSNLPAPLPPKSSISQPQLPKPISLPPAPPPS--TRPEI 301
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,724,235
Number of Sequences: 28460
Number of extensions: 80860
Number of successful extensions: 996
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of query: 218
length of database: 4,897,600
effective HSP length: 87
effective length of query: 131
effective length of database: 2,421,580
effective search space: 317226980
effective search space used: 317226980
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC149127.3